Clone GH25848 Report

Search the DGRC for GH25848

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:258
Well:48
Vector:pOT2
Associated Gene/TranscriptCG6931-RA
Protein status:GH25848.pep: gold
Preliminary Size:1281
Sequenced Size:1104

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6931 2001-01-01 Release 2 assignment
CG6931 2001-11-09 Blastp of sequenced clone
CG6931 2003-01-01 Sim4 clustering to Release 3
CG6931 2008-04-29 Release 5.5 accounting
CG6931 2008-08-15 Release 5.9 accounting
CG6931 2008-12-18 5.12 accounting

Clone Sequence Records

GH25848.complete Sequence

1104 bp (1104 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069203

> GH25848.complete
AATTTAACAGAATTTATTCTGAGGCATAAATTATTTGATGATGAACAAGA
AGCTCTCGCCAGAGGATGCATTTTATGAAAATTTGACCCTCGGTCTGATA
AGGACGCTATCCAATGTGCCAAGGGTATGTAATGTGACGTTGGAGCGACG
ACAACCTCTGAATGCCTGCCAGTTGGTGAATTGGGAGCAGAGGCACTGCG
TCTACCTCCCGGAAGATATGAAGAAGTTCTACCTATCTTCTGATGGCTTT
ATCTTAAACTGGAGCTACCAATATGCTCCCAACGATATTAGGCGCGTGGG
TCACATTCACTTTCCGCACTTGCTGCAAGTGACCCTTTTGCGGGAGAACA
TAGAAACCACATCGAGCCACTCCAGCAATTCGACGGCTGTGCCCAATAGC
AACTCGGATGTTGTGGGAGCAGCCGGGAGCTCTCAATCCCTTCCAGCACC
TATTGCCACCGGAAAAGACAAGTGGGGCAATGCCACGCCTATTATAACGG
CCAAATCGAAAATATTTGAGATCAACAACGTAAACGAGGTGGCCAAGGTG
TGTATGCTGTACGAATCTACCAGTTCCAACAATCCCAAGTTCTATCTGCT
AGAGCTGAGCACCCTGAGCTGGCAGTTTTTGGCGGACACCTTTAGTGAAT
ACCTTCGGATGGCCATCGCGCACTTGGGACTGCCGTACTGGGAGCTGTGC
TTCTCCACCTGTGGCCTGCCCTCTTGGACAGAGCAGCTGTTTCTTTTGCT
AGCACCTCATCTTCTCGAGGAGCACGAGCCACGACGTGGACGAGTACTGA
ATCCCGCTTGCGAGCATCCGTACAATATCATTGATCCGAACATTTTTCGG
GGTAAACCAAAAAGCGTGGCAAAAGCAACGGCTACCAGCACCAAACAAAA
TCATAAATAGTGACTTTCTGTAGAAAAGTAAACAATTTATTTATGAGGGT
ACATAAATGCCAAAAAACAATGAAATGAAAACGTGCAAGGGAAATTCCTG
AGGACTGGTTAATATATAAATCAATAACGTTCGCTCTCAACGGCGGATGT
TTACGTTTCAAACTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAA

GH25848.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:00:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6931-RA 1162 CG6931-RA 97..1161 1..1065 5325 100 Plus
viaf-RA 1166 viaf-RA 1019..1166 1065..918 740 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 18:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11982293..11982812 546..1065 2600 100 Plus
chr3L 24539361 chr3L 11981954..11982229 279..554 1380 100 Plus
chr3L 24539361 chr3L 11981729..11981896 111..278 840 100 Plus
chr3L 24539361 chr3L 11981558..11981667 1..110 550 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:07:58 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 18:11:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11991481..11992000 546..1065 2600 100 Plus
3L 28110227 3L 11991142..11991417 279..554 1380 100 Plus
3L 28110227 3L 11990917..11991084 111..278 840 100 Plus
3L 28110227 3L 11990746..11990855 1..110 550 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11984581..11985100 546..1065 2600 100 Plus
3L 28103327 3L 11984242..11984517 279..554 1380 100 Plus
3L 28103327 3L 11984017..11984184 111..278 840 100 Plus
3L 28103327 3L 11983846..11983955 1..110 550 100 Plus
Blast to na_te.dros performed on 2019-03-15 18:11:46 has no hits.

GH25848.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 18:12:51 Download gff for GH25848.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11981558..11981667 1..110 100 -> Plus
chr3L 11981729..11981896 111..278 100 -> Plus
chr3L 11981954..11982222 279..547 100 -> Plus
chr3L 11982295..11982812 548..1065 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:56:27 Download gff for GH25848.complete
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 1..873 38..910 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:33:55 Download gff for GH25848.complete
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 1..873 38..910 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:54:58 Download gff for GH25848.complete
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 1..873 38..910 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:01:29 Download gff for GH25848.complete
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 1..873 38..910 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:54:37 Download gff for GH25848.complete
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 1..873 38..910 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:13:11 Download gff for GH25848.complete
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 3..1067 1..1065 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:33:55 Download gff for GH25848.complete
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 3..1067 1..1065 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:54:58 Download gff for GH25848.complete
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 11..1075 1..1065 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:01:29 Download gff for GH25848.complete
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 3..1067 1..1065 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:54:37 Download gff for GH25848.complete
Subject Subject Range Query Range Percent Splice Strand
CG6931-RA 11..1075 1..1065 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:12:51 Download gff for GH25848.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11990746..11990855 1..110 100 -> Plus
3L 11990917..11991084 111..278 100 -> Plus
3L 11991142..11991410 279..547 100 -> Plus
3L 11991483..11992000 548..1065 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:12:51 Download gff for GH25848.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11990746..11990855 1..110 100 -> Plus
3L 11990917..11991084 111..278 100 -> Plus
3L 11991142..11991410 279..547 100 -> Plus
3L 11991483..11992000 548..1065 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 18:12:51 Download gff for GH25848.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11990746..11990855 1..110 100 -> Plus
3L 11990917..11991084 111..278 100 -> Plus
3L 11991142..11991410 279..547 100 -> Plus
3L 11991483..11992000 548..1065 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:54:58 Download gff for GH25848.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11983846..11983955 1..110 100 -> Plus
arm_3L 11984017..11984184 111..278 100 -> Plus
arm_3L 11984242..11984510 279..547 100 -> Plus
arm_3L 11984583..11985100 548..1065 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:38:24 Download gff for GH25848.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11984242..11984510 279..547 100 -> Plus
3L 11984583..11985100 548..1065 100   Plus
3L 11983846..11983955 1..110 100 -> Plus
3L 11984017..11984184 111..278 100 -> Plus

GH25848.hyp Sequence

Translation from 37 to 909

> GH25848.hyp
MMNKKLSPEDAFYENLTLGLIRTLSNVPRVCNVTLERRQPLNACQLVNWE
QRHCVYLPEDMKKFYLSSDGFILNWSYQYAPNDIRRVGHIHFPHLLQVTL
LRENIETTSSHSSNSTAVPNSNSDVVGAAGSSQSLPAPIATGKDKWGNAT
PIITAKSKIFEINNVNEVAKVCMLYESTSSNNPKFYLLELSTLSWQFLAD
TFSEYLRMAIAHLGLPYWELCFSTCGLPSWTEQLFLLLAPHLLEEHEPRR
GRVLNPACEHPYNIIDPNIFRGKPKSVAKATATSTKQNHK*

GH25848.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:30:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG6931-PA 290 CG6931-PA 1..290 1..290 1546 100 Plus

GH25848.pep Sequence

Translation from 37 to 909

> GH25848.pep
MMNKKLSPEDAFYENLTLGLIRTLSNVPRVCNVTLERRQPLNACQLVNWE
QRHCVYLPEDMKKFYLSSDGFILNWSYQYAPNDIRRVGHIHFPHLLQVTL
LRENIETTSSHSSNSTAVPNSNSDVVGAAGSSQSLPAPIATGKDKWGNAT
PIITAKSKIFEINNVNEVAKVCMLYESTSSNNPKFYLLELSTLSWQFLAD
TFSEYLRMAIAHLGLPYWELCFSTCGLPSWTEQLFLLLAPHLLEEHEPRR
GRVLNPACEHPYNIIDPNIFRGKPKSVAKATATSTKQNHK*

GH25848.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25309-PA 287 GF25309-PA 1..287 2..290 1256 89.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15550-PA 289 GG15550-PA 1..289 1..290 1520 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:26:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17133-PA 279 GH17133-PA 1..273 2..286 1127 77.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6931-PA 290 CG6931-PA 1..290 1..290 1546 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11742-PA 278 GI11742-PA 1..278 2..290 1080 74 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25115-PA 297 GL25115-PA 1..278 2..272 1190 84.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19963-PA 297 GA19963-PA 1..278 2..272 1186 83.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25318-PA 291 GM25318-PA 1..289 1..289 1532 98.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:26:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14350-PA 291 GD14350-PA 1..289 1..289 1522 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11414-PA 275 GJ11414-PA 1..275 2..290 1159 78.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:26:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16935-PA 283 GK16935-PA 1..266 2..277 1168 82.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:26:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21873-PA 291 GE21873-PA 1..289 1..289 1540 98.6 Plus