Clone GH25855 Report

Search the DGRC for GH25855

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:258
Well:55
Vector:pOT2
Associated Gene/TranscriptCct2-RA
Protein status:GH25855.pep: gold
Preliminary Size:1716
Sequenced Size:1714

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18330 2001-01-01 Release 2 assignment
CG18330 2001-09-19 Blastp of sequenced clone
CG18330 2003-01-01 Sim4 clustering to Release 3
Cct2 2008-04-29 Release 5.5 accounting
Cct2 2008-08-15 Release 5.9 accounting
Cct2 2008-12-18 5.12 accounting

Clone Sequence Records

GH25855.complete Sequence

1714 bp (1714 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058458

> GH25855.complete
CCTGATCGAATCGGCGGACCCGTGCCAAGTCAGGCGACCGACCCGTTGCT
TCCTATTTGCTTGCGCCGCAATTTGCGGCAATTGAAGATGAGCGATGAAT
CCGAGCCAGAGACTTGGGCCTGAGACTGCTAGAGCCGCCTCCAAGTCGTG
TGCCTCGCCAGCCGCTGGACTCAATTGTATTGATTCGCCACCAGTTGCCG
CCAATTTATTCTGATCGCAGCTAGTGCGCAGTTGGGGACATCTCTCGCTC
AAAGTCTCGGACTCAATCCTCGACAGAGTAGACCTAGAGGGTTATGCCGG
TTCCGTCTCAATTTATGTAATCAGTCGTCCGGATGAAATCCCCTTGAGCG
GACCACTAGTGCTGTACTTAGTTGTGTATACTCGTACATATATTTTTATA
AGCAATGGACAGAATGCCGAAAGAGGACGACGAATCTCCAGTGTCGACGG
CTCCTGCCACACCGACATCGCCGATGGAGTTTAAGATGCTACCGCTCTTT
ATGGACTTTGAGGATTTTAGCATTTGCCAGCCTGCTCCTTTCTCGTACGA
TGACAAGGCCATGCTGGAGCTCGAGAGATGCGACTACACACAGAGGATCA
CCTATCATATGGCCAGAGCTGGGAAGACGACGCGCAGGGTGCGGGTCTAT
GCAGATGGCATATATGATCTGTTCCACCAAGGCCATGCCCGCCAACTCAT
GCAGGCCAAGAATGTGTTTCCCAACGTCTATCTCATCGTCGGCGTGTGCA
ATGATGAGCTGACCCTCAGGATGAAGGGACGCACGGTTATGAATGGATTC
GAGCGCTACGAGGCGGTGCGCCACTGCCGCTACGTGGATGAGATCGTTCC
GAATGCTCCGTGGACGCTAAATGAGGAGTTTATCGAGGAGCACAAAATCG
ACTTTGTGGCCCACGATGACATACCCTATGGAGCTGGCGGAGTCAACGAC
ATATATGCTCCACTCAAAGCGAAGGGAATGTTTGTGGCCACGGAACGCAC
TGAGGGCGTGTCCACGTCGGACATTGTGGCCCGAATCGTGAAGGACTACG
ATGTATATGTGCGCAGGAACCTGGCCAGAGGCTACTCAGCCAAGGAGCTC
AACGTCTCCTTTCTCTCCGAGAAGAAATTCCGTCTGCAGAACAAGATGGA
CGAGCTGAAGACACGAGGCAAGCGGGAGCTGACCAAAGTCAAGGTTGACA
TCATCACCAAGTGGGAGGAGAAGTCGCGCGAGTTCATCGATGCCTTCCTG
CTCCTGTTCGGCCGGGAGCGGCTTAACACCTTCTGGAACGAGTCCAAGGG
CCGAATCATTCAGGCACTCAGCCCACCAGGCAGTCCGAATGGCTCCGTAA
ACGGTGACGATCCAGACGCAACAGACGACTTAGACTCTGAGGATGAGTAC
ATGGAGCTGCCACCAGACTACGGGTCTGGTAGTTGCGTATCCCTTAGTCG
AAAACAAAAGCGCCCTGATAAGGTGAATGCCTCAGCAAACCTCAATTACT
CGGAGCAACCAGAGCATAAGGATGTCGTAGACGAGCGACGCAGCGACTAA
AGACGAATTTGGCCTCTTCCTATCAATTAAAACATAAATAAATATGTTTG
AAGTTTAATGGAACAGCGCAGTAGGCACTTTTATACATATTTAAAAGAGC
TACCAGAAAAAGTATGCGCTTAAAATACATTCCGATAAATTTCAGTTAAA
AAAAAAAAAAAAAA

GH25855.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:19
Subject Length Description Subject Range Query Range Score Percent Strand
Cct2-RA 1707 Cct2-RA 1..1700 1..1700 8500 100 Plus
Cct1.d 1764 Cct1.d 497..819 946..1268 940 86 Plus
Cct1-RC 2339 Cct1-RC 1072..1394 946..1268 940 86 Plus
Cct1.d 1764 Cct1.d 73..481 522..930 875 80.9 Plus
Cct1-RC 2339 Cct1-RC 648..1056 522..930 875 80.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1553966..1554822 841..1697 4120 98.7 Plus
chr3L 24539361 chr3L 1553000..1553517 1..518 2545 99.4 Plus
chr3L 24539361 chr3L 1553585..1553908 519..842 1575 99.1 Plus
chr3L 24539361 chr3L 1551361..1551877 841..1357 1130 81.2 Plus
chr3L 24539361 chr3L 1550979..1551299 522..842 720 81.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:08:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1554459..1555318 841..1700 4300 100 Plus
3L 28110227 3L 1553493..1554010 1..518 2590 100 Plus
3L 28110227 3L 1554078..1554401 519..842 1620 100 Plus
3L 28110227 3L 1551863..1552379 841..1357 1085 80.7 Plus
3L 28110227 3L 1551481..1551801 522..842 720 81.6 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1554459..1555318 841..1700 4300 100 Plus
3L 28103327 3L 1553493..1554010 1..518 2590 100 Plus
3L 28103327 3L 1554078..1554401 519..842 1620 100 Plus
3L 28103327 3L 1551968..1552290 946..1268 940 86 Plus
3L 28103327 3L 1551481..1551801 522..842 720 81.6 Plus
3L 28103327 3L 1551863..1551952 841..930 165 78.8 Plus
Blast to na_te.dros performed on 2019-03-15 15:18:54 has no hits.

GH25855.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:19:37 Download gff for GH25855.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1553000..1553517 1..518 99 -> Plus
chr3L 1553585..1553908 519..842 99 -> Plus
chr3L 1553968..1554822 843..1697 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:56:29 Download gff for GH25855.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 1..1146 405..1550 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:05:11 Download gff for GH25855.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 1..1146 405..1550 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:23:42 Download gff for GH25855.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 1..1146 405..1550 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:35:53 Download gff for GH25855.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 1..1146 405..1550 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:01:54 Download gff for GH25855.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 1..1146 405..1550 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:54:33 Download gff for GH25855.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 1..1697 1..1697 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:05:11 Download gff for GH25855.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 1..1697 1..1697 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:23:42 Download gff for GH25855.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 1..1697 1..1697 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:35:53 Download gff for GH25855.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 1..1697 1..1697 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:01:54 Download gff for GH25855.complete
Subject Subject Range Query Range Percent Splice Strand
Cct2-RA 1..1697 1..1697 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:37 Download gff for GH25855.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1553493..1554010 1..518 100 -> Plus
3L 1554078..1554401 519..842 100 -> Plus
3L 1554461..1555315 843..1697 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:37 Download gff for GH25855.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1553493..1554010 1..518 100 -> Plus
3L 1554078..1554401 519..842 100 -> Plus
3L 1554461..1555315 843..1697 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:19:37 Download gff for GH25855.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1553493..1554010 1..518 100 -> Plus
3L 1554078..1554401 519..842 100 -> Plus
3L 1554461..1555315 843..1697 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:23:42 Download gff for GH25855.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1553493..1554010 1..518 100 -> Plus
arm_3L 1554078..1554401 519..842 100 -> Plus
arm_3L 1554461..1555315 843..1697 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:12:54 Download gff for GH25855.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1553493..1554010 1..518 100 -> Plus
3L 1554078..1554401 519..842 100 -> Plus
3L 1554461..1555315 843..1697 100   Plus

GH25855.pep Sequence

Translation from 404 to 1549

> GH25855.pep
MDRMPKEDDESPVSTAPATPTSPMEFKMLPLFMDFEDFSICQPAPFSYDD
KAMLELERCDYTQRITYHMARAGKTTRRVRVYADGIYDLFHQGHARQLMQ
AKNVFPNVYLIVGVCNDELTLRMKGRTVMNGFERYEAVRHCRYVDEIVPN
APWTLNEEFIEEHKIDFVAHDDIPYGAGGVNDIYAPLKAKGMFVATERTE
GVSTSDIVARIVKDYDVYVRRNLARGYSAKELNVSFLSEKKFRLQNKMDE
LKTRGKRELTKVKVDIITKWEEKSREFIDAFLLLFGRERLNTFWNESKGR
IIQALSPPGSPNGSVNGDDPDATDDLDSEDEYMELPPDYGSGSCVSLSRK
QKRPDKVNASANLNYSEQPEHKDVVDERRSD*

GH25855.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24774-PA 389 GF24774-PA 1..357 1..356 1631 85.2 Plus
Dana\GF24772-PA 526 GF24772-PA 150..477 10..339 1395 77.9 Plus
Dana\GF15564-PA 393 GF15564-PA 31..164 77..212 240 40.9 Plus
Dana\GF15564-PA 393 GF15564-PA 227..391 81..247 216 36.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14798-PA 368 GG14798-PA 1..368 4..381 1775 87.8 Plus
Dere\GG14797-PA 521 GG14797-PA 165..521 37..381 1391 74.2 Plus
Dere\GG23821-PA 384 GG23821-PA 19..155 74..212 234 40 Plus
Dere\GG23821-PA 384 GG23821-PA 218..363 81..225 209 37.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14503-PA 571 GH14503-PA 220..532 39..353 1372 81.9 Plus
Dgri\GH11091-PA 385 GH11091-PA 17..156 71..212 233 39.2 Plus
Dgri\GH11091-PA 385 GH11091-PA 219..364 81..225 201 36.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
Pcyt2-PA 381 CG18330-PA 1..381 1..381 2010 100 Plus
Pcyt1-PF 526 CG1049-PF 158..513 32..377 1360 75.3 Plus
Pcyt1-PE 526 CG1049-PE 158..513 32..377 1360 75.3 Plus
Pcyt1-PC 526 CG1049-PC 158..513 32..377 1360 75.3 Plus
Pcyt1-PB 526 CG1049-PB 158..513 32..377 1360 75.3 Plus
Pcyt1-PD 526 CG1049-PD 158..513 32..377 1360 75.3 Plus
Pcyt1-PA 526 CG1049-PA 158..513 32..377 1360 75.3 Plus
Pect-PB 393 CG5547-PB 16..174 74..234 229 36.4 Plus
Pect-PE 371 CG5547-PE 16..152 74..212 227 39.3 Plus
Pect-PC 374 CG5547-PC 16..152 74..212 227 39.3 Plus
Pect-PD 381 CG5547-PD 16..152 74..212 227 39.3 Plus
Pect-PB 393 CG5547-PB 227..372 81..225 210 37.8 Plus
Pect-PE 371 CG5547-PE 205..350 81..225 210 37.8 Plus
Pect-PC 374 CG5547-PC 208..353 81..225 210 37.8 Plus
Pect-PD 381 CG5547-PD 215..360 81..225 210 37.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:51:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13279-PA 575 GI13279-PA 195..532 16..353 1441 80.6 Plus
Dmoj\GI17607-PA 394 GI17607-PA 26..165 71..212 236 39.2 Plus
Dmoj\GI17607-PA 394 GI17607-PA 228..373 81..225 204 36.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:51:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24808-PA 531 GL24808-PA 169..454 32..316 1341 84.6 Plus
Dper\GL24809-PA 417 GL24809-PA 56..360 26..334 1302 78.3 Plus
Dper\GL24617-PA 357 GL24617-PA 26..293 40..310 1122 75.7 Plus
Dper\GL26305-PA 395 GL26305-PA 35..166 79..212 225 40 Plus
Dper\GL26305-PA 395 GL26305-PA 229..374 81..225 203 36.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:51:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10348-PA 531 GA10348-PA 169..454 32..316 1341 84.6 Plus
Dpse\GA23519-PA 417 GA23519-PA 56..360 26..334 1294 78 Plus
Dpse\GA23364-PA 391 GA23364-PA 55..329 33..310 1127 73.8 Plus
Dpse\GA28810-PA 395 GA28810-PA 35..166 79..212 225 40 Plus
Dpse\GA28810-PA 395 GA28810-PA 229..374 81..225 203 36.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14420-PA 380 GM14420-PA 1..380 1..381 1963 96.6 Plus
Dsec\GM14419-PA 524 GM14419-PA 157..463 31..335 1394 82.1 Plus
Dsec\GM10235-PA 381 GM10235-PA 16..152 74..212 228 39.3 Plus
Dsec\GM10235-PA 381 GM10235-PA 215..360 81..225 213 37.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:51:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13624-PA 381 GD13624-PA 1..381 1..381 1967 96.1 Plus
Dsim\GD13623-PA 524 GD13623-PA 157..463 31..335 1394 82.1 Plus
Dsim\GD23872-PA 381 GD23872-PA 16..152 74..212 228 39.3 Plus
Dsim\GD23872-PA 381 GD23872-PA 215..360 81..225 213 37.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12047-PA 368 GJ12047-PA 2..329 24..353 1420 80.6 Plus
Dvir\GJ17952-PA 415 GJ17952-PA 249..394 81..225 205 36.5 Plus
Dvir\GJ17952-PA 415 GJ17952-PA 50..173 87..212 205 39.4 Plus
Dvir\GJ14914-PA 351 GJ14914-PA 185..330 81..225 203 36.5 Plus
Dvir\GJ14912-PA 167 GJ14912-PA 1..146 81..225 201 36.5 Plus
Dvir\GJ14914-PA 351 GJ14914-PA 1..122 89..212 190 38.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:51:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12565-PA 560 GK12565-PA 193..496 39..339 1378 83.9 Plus
Dwil\GK14544-PA 393 GK14544-PA 33..176 79..224 234 38.8 Plus
Dwil\GK14544-PA 393 GK14544-PA 227..372 81..225 205 36.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21160-PA 380 GE21160-PA 1..380 1..381 1836 89.2 Plus
Dyak\GE21159-PA 520 GE21159-PA 157..520 31..381 1399 74.7 Plus
Dyak\Pect-PA 384 GE18624-PA 15..155 70..212 242 39.6 Plus
Dyak\Pect-PA 384 GE18624-PA 218..363 81..225 213 37.8 Plus

GH25855.hyp Sequence

Translation from 404 to 1549

> GH25855.hyp
MDRMPKEDDESPVSTAPATPTSPMEFKMLPLFMDFEDFSICQPAPFSYDD
KAMLELERCDYTQRITYHMARAGKTTRRVRVYADGIYDLFHQGHARQLMQ
AKNVFPNVYLIVGVCNDELTLRMKGRTVMNGFERYEAVRHCRYVDEIVPN
APWTLNEEFIEEHKIDFVAHDDIPYGAGGVNDIYAPLKAKGMFVATERTE
GVSTSDIVARIVKDYDVYVRRNLARGYSAKELNVSFLSEKKFRLQNKMDE
LKTRGKRELTKVKVDIITKWEEKSREFIDAFLLLFGRERLNTFWNESKGR
IIQALSPPGSPNGSVNGDDPDATDDLDSEDEYMELPPDYGSGSCVSLSRK
QKRPDKVNASANLNYSEQPEHKDVVDERRSD*

GH25855.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:30:38
Subject Length Description Subject Range Query Range Score Percent Strand
Cct2-PA 381 CG18330-PA 1..381 1..381 2010 100 Plus
Cct1-PF 526 CG1049-PF 158..513 32..377 1360 75.3 Plus
Cct1-PE 526 CG1049-PE 158..513 32..377 1360 75.3 Plus
Cct1-PC 526 CG1049-PC 158..513 32..377 1360 75.3 Plus
Cct1-PB 526 CG1049-PB 158..513 32..377 1360 75.3 Plus