Clone GH25868 Report

Search the DGRC for GH25868

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:258
Well:68
Vector:pOT2
Associated Gene/TranscriptCG7011-RA
Protein status:GH25868.pep: gold
Preliminary Size:1523
Sequenced Size:1330

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7011 2001-01-01 Release 2 assignment
CG7011 2001-10-10 Blastp of sequenced clone
CG7011 2003-01-01 Sim4 clustering to Release 3
CG7011 2008-04-29 Release 5.5 accounting
CG7011 2008-08-15 Release 5.9 accounting
CG7011 2008-12-18 5.12 accounting

Clone Sequence Records

GH25868.complete Sequence

1330 bp (1330 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060788

> GH25868.complete
GCAACGCCAATTTCAACACGTCACCTGTCTTGTGCAAAAACGATGTAATA
TTTATTGTTTACGTCTGCATTTCGTCTGTTTTGTTCCTTTTACGTGTTCA
CGATGAAGTTCGCCGACGTGCTGCGTCGCCTGGACGCCTATCCCCGCACA
CTGGATGACTTCAGCGTTCGCACAGTGGGCGGCGCCGCAGTTACAATTAT
CAGTACCAGCATCATAAGCCTACTGATCTTCCTCGAGGTCCTCAACTACA
TGCAGCCAACCCTAAATGAAGAGCTCTTCGTGGACACCACTCGTGATCAC
AAGTTGAGAATAAATCTGGACGTGACACTGCATAATCTGGCGTGCAACTA
CATCTCATTGGACGCAATGGATTCATCTGGCGACACACACTTGAGGGTGG
ACCACGACGTCTTTAAGCACCGGCTGGATCTCAATGGCGAGCCCCTCAAG
GAGACGCCCATCAAGGAAATCGTTGCAGTTTCGCCGCCCAATAAGAATGT
CACTTGCGGCAGTTGTTACGGAGCGGAGCACAATGCTACTCACTGCTGCA
ACACGTGCGAGGATGTTCTCGACGCCTACCGGCTGCGCAAATGGACCGTG
GCCGTGGACAAGATCGAGCAATGTAAGGGCAAGTACAAACGCAGCGACGA
GGACGCCTTCAAGGAGGGCTGTCGCATCCAGGGTCACCTGGAAGTGAATC
GAATGGCCGGCAGCTTTCACTTTGCGCCCGGCAAGAGCTTCTCCATCCGC
CAGTTCCACATCCATGACTTTCAGTTCAGCAATGTGAAGCTATCGCACAC
AATCAATCACCTATCGTTCGGCGAGAAGATAGAGTTCGCCAAGACGCATC
CCTTGGATGGACTACGAGTCGACGTGGCTGAAACCAAAAGTGAAATGTTC
AATTACTATTTAAAAATTGTTCCCACATTATATATGCGAGGAAACAGCGA
CGGCGAGCCCATATACACGAATCAATTCTCCGTCACGCGATACCGAAAAG
ATCTTTCAGATCGCGAGCGCGGAATGCCGGGGATATTCTTCAGCTACGAG
CTCTCGCCACTGATGGTGAAATATGCGGAGAGACACAGCTCATTTGGCCA
CTTCGCCACGAATTGCTGTTCCATCATCGGAGGCGTGTTCACGGTGGCCG
GCATTCTCGCCGTGCTGCTGAACAACTCGTGGGAGGCCATTCAACGGAAA
CTGGAAGTCGGCAAGCTCAGCTAACAACAATTCGAATCTCTTATGCAGCT
TTACTACGCCTAACTCAATATACATTCGACAAATCTCCAAATAAAAGTGC
TTAATTTTATAGAAAAAAAAAAAAAAAAAA

GH25868.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7011-RA 1455 CG7011-RA 137..1452 1..1316 6580 100 Plus
CG6876-RA 2024 CG6876-RA 1738..1968 1316..1086 1155 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:10:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 15153080..15153434 542..188 1625 97.2 Minus
chr3L 24539361 chr3L 15152593..15152930 880..543 1615 98.5 Minus
chr3L 24539361 chr3L 15150969..15151195 1312..1086 1135 100 Minus
chr3L 24539361 chr3L 15151254..15151466 1092..880 1050 99.5 Minus
chr3L 24539361 chr3L 15153501..15153690 190..1 935 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:08:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15162987..15163341 542..188 1775 100 Minus
3L 28110227 3L 15162500..15162837 880..543 1690 100 Minus
3L 28110227 3L 15160872..15161102 1316..1086 1155 100 Minus
3L 28110227 3L 15161161..15161373 1092..880 1050 99.5 Minus
3L 28110227 3L 15163408..15163597 190..1 950 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 15156087..15156441 542..188 1775 100 Minus
3L 28103327 3L 15155600..15155937 880..543 1690 100 Minus
3L 28103327 3L 15153972..15154202 1316..1086 1155 100 Minus
3L 28103327 3L 15154261..15154473 1092..880 1050 99.5 Minus
3L 28103327 3L 15156508..15156697 190..1 950 100 Minus
Blast to na_te.dros performed on 2019-03-16 06:10:33 has no hits.

GH25868.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:11:32 Download gff for GH25868.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 15150969..15151192 1089..1312 100 <- Minus
chr3L 15151258..15151465 881..1088 100 <- Minus
chr3L 15152593..15152930 543..880 98 <- Minus
chr3L 15153080..15153431 191..542 97 <- Minus
chr3L 15153501..15153690 1..190 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:56:31 Download gff for GH25868.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 1..1122 103..1224 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:37:13 Download gff for GH25868.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 1..1122 103..1224 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:25:31 Download gff for GH25868.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 1..1122 103..1224 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:06:06 Download gff for GH25868.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 1..1122 103..1224 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:16:54 Download gff for GH25868.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 1..1122 103..1224 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:17:48 Download gff for GH25868.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 28..1339 1..1312 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:37:13 Download gff for GH25868.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 28..1339 1..1312 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:31 Download gff for GH25868.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 32..1343 1..1312 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:06:07 Download gff for GH25868.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 28..1339 1..1312 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:16:54 Download gff for GH25868.complete
Subject Subject Range Query Range Percent Splice Strand
CG7011-RA 32..1343 1..1312 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:11:32 Download gff for GH25868.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15160876..15161099 1089..1312 100 <- Minus
3L 15161165..15161372 881..1088 100 <- Minus
3L 15162500..15162837 543..880 100 <- Minus
3L 15162987..15163338 191..542 100 <- Minus
3L 15163408..15163597 1..190 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:11:32 Download gff for GH25868.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15160876..15161099 1089..1312 100 <- Minus
3L 15161165..15161372 881..1088 100 <- Minus
3L 15162500..15162837 543..880 100 <- Minus
3L 15162987..15163338 191..542 100 <- Minus
3L 15163408..15163597 1..190 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:11:32 Download gff for GH25868.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15160876..15161099 1089..1312 100 <- Minus
3L 15161165..15161372 881..1088 100 <- Minus
3L 15162500..15162837 543..880 100 <- Minus
3L 15162987..15163338 191..542 100 <- Minus
3L 15163408..15163597 1..190 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:31 Download gff for GH25868.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15153976..15154199 1089..1312 100 <- Minus
arm_3L 15155600..15155937 543..880 100 <- Minus
arm_3L 15154265..15154472 881..1088 100 <- Minus
arm_3L 15156087..15156438 191..542 100 <- Minus
arm_3L 15156508..15156697 1..190 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:42:05 Download gff for GH25868.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15153976..15154199 1089..1312 100 <- Minus
3L 15154265..15154472 881..1088 100 <- Minus
3L 15155600..15155937 543..880 100 <- Minus
3L 15156087..15156438 191..542 100 <- Minus
3L 15156508..15156697 1..190 100   Minus

GH25868.hyp Sequence

Translation from 102 to 1223

> GH25868.hyp
MKFADVLRRLDAYPRTLDDFSVRTVGGAAVTIISTSIISLLIFLEVLNYM
QPTLNEELFVDTTRDHKLRINLDVTLHNLACNYISLDAMDSSGDTHLRVD
HDVFKHRLDLNGEPLKETPIKEIVAVSPPNKNVTCGSCYGAEHNATHCCN
TCEDVLDAYRLRKWTVAVDKIEQCKGKYKRSDEDAFKEGCRIQGHLEVNR
MAGSFHFAPGKSFSIRQFHIHDFQFSNVKLSHTINHLSFGEKIEFAKTHP
LDGLRVDVAETKSEMFNYYLKIVPTLYMRGNSDGEPIYTNQFSVTRYRKD
LSDRERGMPGIFFSYELSPLMVKYAERHSSFGHFATNCCSIIGGVFTVAG
ILAVLLNNSWEAIQRKLEVGKLS*

GH25868.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7011-PA 373 CG7011-PA 1..373 1..373 1970 100 Plus
CG4293-PE 439 CG4293-PE 19..364 8..356 210 23.2 Plus
CG4293-PD 441 CG4293-PD 19..366 8..356 203 23.8 Plus
CG4293-PC 441 CG4293-PC 19..366 8..356 203 23.8 Plus
CG4293-PA 441 CG4293-PA 19..366 8..356 203 23.8 Plus

GH25868.pep Sequence

Translation from 102 to 1223

> GH25868.pep
MKFADVLRRLDAYPRTLDDFSVRTVGGAAVTIISTSIISLLIFLEVLNYM
QPTLNEELFVDTTRDHKLRINLDVTLHNLACNYISLDAMDSSGDTHLRVD
HDVFKHRLDLNGEPLKETPIKEIVAVSPPNKNVTCGSCYGAEHNATHCCN
TCEDVLDAYRLRKWTVAVDKIEQCKGKYKRSDEDAFKEGCRIQGHLEVNR
MAGSFHFAPGKSFSIRQFHIHDFQFSNVKLSHTINHLSFGEKIEFAKTHP
LDGLRVDVAETKSEMFNYYLKIVPTLYMRGNSDGEPIYTNQFSVTRYRKD
LSDRERGMPGIFFSYELSPLMVKYAERHSSFGHFATNCCSIIGGVFTVAG
ILAVLLNNSWEAIQRKLEVGKLS*

GH25868.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10736-PA 372 GF10736-PA 1..372 1..373 1897 93.8 Plus
Dana\GF22223-PA 448 GF22223-PA 204..379 188..367 159 32.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:37:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13555-PA 373 GG13555-PA 1..373 1..373 1983 98.1 Plus
Dere\GG12755-PA 441 GG12755-PA 19..349 8..339 167 22.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17030-PA 372 GH17030-PA 1..372 1..373 1825 92.8 Plus
Dgri\GH12601-PA 434 GH12601-PA 190..345 184..339 152 29.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG7011-PA 373 CG7011-PA 1..373 1..373 1970 100 Plus
CG4293-PE 439 CG4293-PE 19..364 8..356 210 23.2 Plus
CG4293-PD 441 CG4293-PD 19..366 8..356 203 23.8 Plus
CG4293-PC 441 CG4293-PC 19..366 8..356 203 23.8 Plus
CG4293-PA 441 CG4293-PA 19..366 8..356 203 23.8 Plus
CG4293-PB 441 CG4293-PB 19..366 8..356 203 23.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:37:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12235-PA 372 GI12235-PA 1..372 1..373 1815 93 Plus
Dmoj\GI15435-PA 433 GI15435-PA 19..370 8..367 171 25.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25735-PA 313 GL25735-PA 1..272 1..272 1405 95.6 Plus
Dper\GL25746-PA 51 GL25746-PA 1..51 323..373 256 92.2 Plus
Dper\GL20164-PA 445 GL20164-PA 16..354 5..339 166 23.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20029-PA 372 GA20029-PA 1..372 1..373 1927 95.4 Plus
Dpse\GA18088-PA 445 GA18088-PA 16..354 5..339 167 23.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24497-PA 373 GM24497-PA 1..373 1..373 2005 99.5 Plus
Dsec\GM19035-PA 437 GM19035-PA 183..345 176..339 151 29.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12569-PA 373 GD12569-PA 1..373 1..373 2005 99.5 Plus
Dsim\GD16474-PA 441 GD16474-PA 19..349 8..339 158 22.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11466-PA 372 GJ11466-PA 1..372 1..373 1884 92.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20487-PA 372 GK20487-PA 1..372 1..373 1906 94.4 Plus
Dwil\GK16119-PA 443 GK16119-PA 15..375 1..367 208 23.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19855-PA 373 GE19855-PA 1..373 1..373 1994 98.7 Plus
Dyak\GE16580-PA 430 GE16580-PA 19..349 8..339 161 22.3 Plus