BDGP Sequence Production Resources |
Search the DGRC for GH25962
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 259 |
Well: | 62 |
Vector: | pOT2 |
Associated Gene/Transcript | Obp49a-RA |
Protein status: | GH25962.pep: gold |
Preliminary Size: | 1482 |
Sequenced Size: | 774 |
Gene | Date | Evidence |
---|---|---|
CG8769 | 2002-01-01 | Sim4 clustering to Release 2 |
CG30052 | 2002-05-18 | Blastp of sequenced clone |
Obp49a | 2008-04-29 | Release 5.5 accounting |
Obp49a | 2008-08-15 | Release 5.9 accounting |
Obp49a | 2008-12-18 | 5.12 accounting |
774 bp (774 high quality bases) assembled on 2002-05-18
GenBank Submission: AY118821
> GH25962.complete CCGAACCAAAAATGCTTTCAAAATCGCAGCTATTACTGCTCGTTGTCGGG TTCTGCCTGAATGCAGCCGTCTCGGCTGACGTGGACTGCAGCAAGCGGCC ATCGTTTGTCAATCCCAAAACCTGTTGTCCAATGCCGGACTTCGTGACCG CCGAGTTGAAGCAAAAGTGCATCAAGTTTGACATGACTCCGCCGCCGCCG CCGGATGGGGAAGCAAGTGGATCCTTTGAGAGCAAGCGTCGTCATCATCA TCCGCATCCCCCACCATGCTTCTTCTCCTGCATCTTTAACGAGACTGGAA TCTATCAAAACCGGAAACTGGATGAGGCAAAGCTGAACGCCTACTTGCAG GAGGTCTTCGAGGACAGTTCTGATCTGCAGACCACGGCCACCCAGGCCTT CACCACCTGTGCAACCAAAGTCGCGGATTTCGAGGCCAATTTACCTCCTC GTCCGGCTCCATCTCCGCCACCCGGATTCCCCATGTGTCCTCACGATGCT GGTCACCTCATGGGCTGTGTGTTCCGCAATATGATGAAGAATTGCCCAGA CTCAATACGGAATGATTCCCAGCAGTGCACTGACATGAAAGAGTTCTTCA CCAAGTGCAAGCCACCTCGTGGTCCTCCTCCTTCCGCCGAAGATATGTAA GGCACCCAAGAAAAATCCTATTTGTCTGAAAACCCGCAATGAATTTACCT CTACCAAGCCGAACTTTTAATATCATTCAATTTAAGCCAATAAACATTTA AAGCTCAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Obp49a-RA | 837 | Obp49a-RA | 78..835 | 1..758 | 3790 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 8577322..8577811 | 756..267 | 2450 | 100 | Minus |
chr2R | 21145070 | chr2R | 8577873..8578080 | 266..59 | 1040 | 100 | Minus |
chr2R | 21145070 | chr2R | 8578136..8578194 | 59..1 | 295 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 12690057..12690548 | 758..267 | 2460 | 100 | Minus |
2R | 25286936 | 2R | 12690610..12690817 | 266..59 | 1040 | 100 | Minus |
2R | 25286936 | 2R | 12690873..12690931 | 59..1 | 295 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 12691256..12691747 | 758..267 | 2460 | 100 | Minus |
2R | 25260384 | 2R | 12691809..12692016 | 266..59 | 1040 | 100 | Minus |
2R | 25260384 | 2R | 12692072..12692130 | 59..1 | 295 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 8577322..8577811 | 267..756 | 100 | <- | Minus |
chr2R | 8577873..8578079 | 60..266 | 100 | <- | Minus |
chr2R | 8578136..8578194 | 1..59 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp49a-RA | 1..639 | 12..650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp49a-RA | 1..639 | 12..650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp49a-RA | 1..639 | 12..650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp49a-RA | 1..639 | 12..650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp49a-RA | 1..639 | 12..650 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp49a-RA | 1..756 | 1..756 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp49a-RA | 25..780 | 1..756 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp49a-RA | 25..780 | 1..756 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp49a-RA | 1..756 | 1..756 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Obp49a-RA | 25..780 | 1..756 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12690059..12690548 | 267..756 | 100 | <- | Minus |
2R | 12690610..12690816 | 60..266 | 100 | <- | Minus |
2R | 12690873..12690931 | 1..59 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12690059..12690548 | 267..756 | 100 | <- | Minus |
2R | 12690610..12690816 | 60..266 | 100 | <- | Minus |
2R | 12690873..12690931 | 1..59 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12690059..12690548 | 267..756 | 100 | <- | Minus |
2R | 12690610..12690816 | 60..266 | 100 | <- | Minus |
2R | 12690873..12690931 | 1..59 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 8577564..8578053 | 267..756 | 100 | <- | Minus |
arm_2R | 8578115..8578321 | 60..266 | 100 | <- | Minus |
arm_2R | 8578378..8578436 | 1..59 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 12691258..12691747 | 267..756 | 100 | <- | Minus |
2R | 12691809..12692015 | 60..266 | 100 | <- | Minus |
2R | 12692072..12692130 | 1..59 | 100 | Minus |
Translation from 2 to 649
> GH25962.hyp EPKMLSKSQLLLLVVGFCLNAAVSADVDCSKRPSFVNPKTCCPMPDFVTA ELKQKCIKFDMTPPPPPDGEASGSFESKRRHHHPHPPPCFFSCIFNETGI YQNRKLDEAKLNAYLQEVFEDSSDLQTTATQAFTTCATKVADFEANLPPR PAPSPPPGFPMCPHDAGHLMGCVFRNMMKNCPDSIRNDSQQCTDMKEFFT KCKPPRGPPPSAEDM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Obp49a-PA | 212 | CG30052-PA | 1..212 | 4..215 | 1180 | 100 | Plus |
Obp50e-PA | 196 | CG13939-PA | 20..196 | 25..212 | 174 | 27.6 | Plus |
Obp47b-PA | 199 | CG13208-PA | 1..195 | 5..202 | 143 | 24.3 | Plus |
Translation from 11 to 649
> GH25962.pep MLSKSQLLLLVVGFCLNAAVSADVDCSKRPSFVNPKTCCPMPDFVTAELK QKCIKFDMTPPPPPDGEASGSFESKRRHHHPHPPPCFFSCIFNETGIYQN RKLDEAKLNAYLQEVFEDSSDLQTTATQAFTTCATKVADFEANLPPRPAP SPPPGFPMCPHDAGHLMGCVFRNMMKNCPDSIRNDSQQCTDMKEFFTKCK PPRGPPPSAEDM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13098-PA | 212 | GF13098-PA | 1..212 | 1..212 | 804 | 79.7 | Plus |
Dana\GF11352-PA | 196 | GF11352-PA | 2..196 | 4..209 | 163 | 26.2 | Plus |
Dana\GF13502-PA | 177 | GF13502-PA | 17..172 | 20..200 | 143 | 23.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22556-PA | 212 | GG22556-PA | 1..212 | 1..212 | 898 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19957-PA | 221 | GH19957-PA | 1..217 | 1..211 | 467 | 48.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Obp49a-PA | 212 | CG30052-PA | 1..212 | 1..212 | 1180 | 100 | Plus |
Obp50e-PA | 196 | CG13939-PA | 20..196 | 22..209 | 174 | 27.6 | Plus |
Obp47b-PA | 199 | CG13208-PA | 1..195 | 2..199 | 143 | 24.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19915-PA | 208 | GI19915-PA | 1..197 | 1..200 | 484 | 45.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17731-PA | 213 | GL17731-PA | 1..207 | 1..207 | 750 | 76 | Plus |
Dper\GL10689-PA | 424 | GL10689-PA | 256..400 | 22..189 | 159 | 25.6 | Plus |
Dper\GL11401-PA | 198 | GL11401-PA | 11..198 | 10..209 | 147 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\Obp49a-PA | 213 | GA24894-PA | 1..207 | 1..207 | 751 | 76.4 | Plus |
Dpse\Obp50e-PA | 198 | GA12642-PA | 11..198 | 10..209 | 147 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20340-PA | 212 | GM20340-PA | 1..212 | 1..212 | 908 | 91 | Plus |
Dsec\GM20213-PA | 196 | GM20213-PA | 10..196 | 8..209 | 148 | 26.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\Obp49a-PA | 212 | GD25818-PA | 1..212 | 1..212 | 924 | 92.5 | Plus |
Dsim\Obp50e-PA | 196 | GD25684-PA | 10..196 | 8..209 | 148 | 27.2 | Plus |
Dsim\Obp50d-PA | 173 | GD11048-PA | 3..170 | 6..199 | 139 | 23.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Obp49a-PA | 212 | GJ15082-PA | 1..211 | 1..209 | 521 | 56.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21689-PA | 216 | GK21689-PA | 1..216 | 1..212 | 509 | 57.1 | Plus |
Dwil\GK21836-PA | 197 | GK21836-PA | 5..197 | 7..209 | 156 | 26 | Plus |
Dwil\GK19396-PA | 179 | GK19396-PA | 1..179 | 7..208 | 148 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\Obp49a-PA | 212 | GE13426-PA | 1..212 | 1..212 | 899 | 90.1 | Plus |
Dyak\GE12314-PA | 196 | GE12314-PA | 20..196 | 22..209 | 157 | 28.1 | Plus |
Dyak\GE14015-PA | 203 | GE14015-PA | 1..197 | 1..200 | 153 | 21.8 | Plus |