Clone GH25972 Report

Search the DGRC for GH25972

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:259
Well:72
Vector:pOT2
Associated Gene/TranscriptCG5718-RA
Protein status:GH25972.pep: gold
Preliminary Size:2366
Sequenced Size:2166

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5718 2001-01-01 Release 2 assignment
CG5718 2002-03-19 Blastp of sequenced clone
CG5718 2003-01-01 Sim4 clustering to Release 3
CG5718 2008-04-29 Release 5.5 accounting
CG5718 2008-08-15 Release 5.9 accounting
CG5718 2008-12-18 5.12 accounting

Clone Sequence Records

GH25972.complete Sequence

2166 bp (2166 high quality bases) assembled on 2002-03-19

GenBank Submission: AY094732

> GH25972.complete
ACACTTAGATTTTAAAAGCGCAAAACTACATTTATTTCGTTAAATACTAC
TGGACCGCCATTAAAAATGAATCGCCTGTTTCTCAAAAGGGCGGGACAGC
ATGTAACCAGGAGCCTTCTTGGTCCAAATGGGAGTCGTCTGCTTCAAGTG
TCCTGCGTTCGAGATGCCAGTTGCAAAGATGAGTACTCCTTGATAGACCA
CAAGTTCGATGCGATTGTCATTGGTGCCGGTGGAGCTGGAATGCGGGCTG
GATTTGGGCTGGCGGAGAAGGGTTTCCAAACGGCCATTATATCAAAGCTA
TTTCCCACCCGATCTCACACGGTGGCTGCCCAGGGTGGTGTTAATGCCGC
CCTCTCAAATATGGACAAGGACGACTGGAAGTACCACTTCTACGACACGG
TGAAGGGCTCCGATTGGCTGGGTGATCAGAACGCGATCCATTACATGTGT
CGGGAGGCGGAGAGGGCGGTCTGCGAACTGGACATGTACGGGATGCCCTT
CTCGCGAAAGCCCGATGGCAAGATCTACCAGCGACCTTTTGGAGGTCAGA
CCTTGGACTACGGAAAGGGCGGGGTGGCCAGAAGGGCGTGTGCATGTGCA
GATCGCACGGGTCACGCCCTTATCCACACACTGTACGGACAAACGCTGAA
GCACTCCGATTCTTGCCACTATTTTGTGGACTACTTCGTTCTGGATCTGA
TCATGTCGCAGGGTGCATGTGTGGGATGTTTGGCTTGGAAACTGGATGAT
GGCACCTTCCATCGGTTTTTGGCCAAAAATACGGTTGTTGCCGCCGGCGG
TTGTGGTCGGGTGTACTTCTCCACGACCGCCGGACACACATGTACCGGCG
ATGGCAATGCGTGGGTGTCTAGACAGGAGCTGCCGCTCATGGATATGGAA
TTTGTGCAGTTTCATCCCACTGGCATCTACGGAGCCGGATGCCTTATCAC
CGAGGGAGTTAGGGGCGAAGGCGGTTTCTTCTTGAACTGCAAGGGAGAAC
GTTTCATGGAACGCTATGCTCCAAAGGCCAAGGATCTGGCGTCCAGAGAT
GTGGTGGCGCGGGCCATGACCATGGAGGTTCTTGCTGGCAATGGTTGTGG
TCCGCTCAAGGATCATGTGCACCTTCAGCTCCACCATATCGACGCCAAGA
TCATCAAGCAACGATTGCCGGGCATTATGGTCACCGCCCGGATTTTTGCC
AAAGTGGATGTGACCAAGGAACCAGTACCAGTGCTGCCAACTGTGCACTA
CAACATGGGCGGCATACCAACGGATTACAAGGGTCGTGTGGTCACCATCG
ATGAGAATGGCAAGGAACAGGTTGTCAAGGGACTGTACTCCTGCGGGGAA
ACTTCCTGCGCCTCAGTACACGGAGCAAATCGATTGGGTGCCAACTCCCT
GCTGGATCTGATCATCTTTGGCCGCGTCTGTGCTCTGGACATTGCCGCAA
ACAACTGTCCGGGGGATAAGCCGCCCCAGGTGGAGGACAAAGCCACGGAG
AAGTCGCTGGATAATTTTAAGCGCCTGCGCTGCGCCGACGGATGCATTCC
CACTGCGGTGTTGAGAATGGAACTTCAGCGGACCATGACCAAACATGCGG
CTGTTTTCCGGGAGGGAAAACTGCTCAAGGAGGGTCTGCTCAAAGTGGCC
GAGTTATGTGAACAGTTCAAGGACATCAAGACAACCGATCGTACGATGGT
GTGGAACTCCAACCTAGTTGAGACGCTAGAGCTGCAGAATATGCTAGCCA
ATGCGGTGCACATCATTACAGCCATGGAAAATCGCAAGGAGTCGAGGGGC
TCCCATGCTCGCGAGGATTTCAAGACGCGCGTGGATGAGCTGGACTATGG
AGCACCACTGGCCGGACAGAAAAAGAAACCATTCGAGGAGCATTGGCGCA
AGCACACCATGACCTTTGCACTGGGTAACAAAGGATGTGCATCGATCAAA
TATCGCCCGGTTGTGGACACCACCTTGGACAGCTCCGTTGCACCCATTCC
ACCTGCTCCGCGCACCTACTGAACATTTATGTGTAGTTTTGAGCTGGTAC
AGTTTCATTCTCTTACATTCTCTGGGATATTAAAACAAAAACACATATTG
ACTATCAAAATGTGGCCATTTTGTATAAATATATAAGATGAAAACAACAA
AAAAAAAAAAAAAAAA

GH25972.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG5718-RA 2155 CG5718-RA 1..2155 1..2155 10775 100 Plus
SdhA-RC 2752 SdhA-RC 319..645 207..533 450 75.8 Plus
SdhA-RB 2819 SdhA-RB 386..712 207..533 450 75.8 Plus
SdhA-RC 2752 SdhA-RC 997..1062 891..956 210 87.8 Plus
SdhA-RB 2819 SdhA-RB 1064..1129 891..956 210 87.8 Plus
SdhA-RC 2752 SdhA-RC 1109..1183 1003..1077 150 80 Plus
SdhA-RB 2819 SdhA-RB 1176..1250 1003..1077 150 80 Plus
SdhA-RC 2752 SdhA-RC 1808..1860 1702..1754 145 84.9 Plus
SdhA-RB 2819 SdhA-RB 1875..1927 1702..1754 145 84.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:29:55
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11913435..11915582 2148..1 10695 99.9 Minus
chr2R 21145070 chr2R 15280632..15281496 1077..207 540 71.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:08:09 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:29:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11922603..11924757 2155..1 10775 100 Minus
2R 25286936 2R 19393460..19394324 1077..207 540 71.1 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11915703..11917857 2155..1 10775 100 Minus
2R 25260384 2R 19395197..19395523 533..207 450 75.8 Minus
2R 25260384 2R 19394780..19394845 956..891 210 87.8 Minus
2R 25260384 2R 19394659..19394733 1077..1003 150 80 Minus
2R 25260384 2R 19393926..19393978 1754..1702 145 84.9 Minus
Blast to na_te.dros performed on 2019-03-15 21:29:53 has no hits.

GH25972.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:30:42 Download gff for GH25972.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11913435..11915582 1..2148 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:56:35 Download gff for GH25972.complete
Subject Subject Range Query Range Percent Splice Strand
CG5718-RA 1..1956 67..2022 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:30:29 Download gff for GH25972.complete
Subject Subject Range Query Range Percent Splice Strand
CG5718-RA 1..1956 67..2022 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:50:18 Download gff for GH25972.complete
Subject Subject Range Query Range Percent Splice Strand
CG5718-RA 1..1956 67..2022 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:04:06 Download gff for GH25972.complete
Subject Subject Range Query Range Percent Splice Strand
CG5718-RA 1..1956 67..2022 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:34 Download gff for GH25972.complete
Subject Subject Range Query Range Percent Splice Strand
CG5718-RA 1..1956 67..2022 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:56:39 Download gff for GH25972.complete
Subject Subject Range Query Range Percent Splice Strand
CG5718-RA 1..2148 1..2148 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:30:28 Download gff for GH25972.complete
Subject Subject Range Query Range Percent Splice Strand
CG5718-RA 1..2148 1..2148 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:50:18 Download gff for GH25972.complete
Subject Subject Range Query Range Percent Splice Strand
CG5718-RA 1..2148 1..2148 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:04:06 Download gff for GH25972.complete
Subject Subject Range Query Range Percent Splice Strand
CG5718-RA 1..2148 1..2148 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:34 Download gff for GH25972.complete
Subject Subject Range Query Range Percent Splice Strand
CG5718-RA 1..2148 1..2148 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:42 Download gff for GH25972.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11922610..11924757 1..2148 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:42 Download gff for GH25972.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11922610..11924757 1..2148 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:42 Download gff for GH25972.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11922610..11924757 1..2148 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:50:18 Download gff for GH25972.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11915710..11917857 1..2148 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:37:47 Download gff for GH25972.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11915710..11917857 1..2148 100   Minus

GH25972.pep Sequence

Translation from 66 to 2021

> GH25972.pep
MNRLFLKRAGQHVTRSLLGPNGSRLLQVSCVRDASCKDEYSLIDHKFDAI
VIGAGGAGMRAGFGLAEKGFQTAIISKLFPTRSHTVAAQGGVNAALSNMD
KDDWKYHFYDTVKGSDWLGDQNAIHYMCREAERAVCELDMYGMPFSRKPD
GKIYQRPFGGQTLDYGKGGVARRACACADRTGHALIHTLYGQTLKHSDSC
HYFVDYFVLDLIMSQGACVGCLAWKLDDGTFHRFLAKNTVVAAGGCGRVY
FSTTAGHTCTGDGNAWVSRQELPLMDMEFVQFHPTGIYGAGCLITEGVRG
EGGFFLNCKGERFMERYAPKAKDLASRDVVARAMTMEVLAGNGCGPLKDH
VHLQLHHIDAKIIKQRLPGIMVTARIFAKVDVTKEPVPVLPTVHYNMGGI
PTDYKGRVVTIDENGKEQVVKGLYSCGETSCASVHGANRLGANSLLDLII
FGRVCALDIAANNCPGDKPPQVEDKATEKSLDNFKRLRCADGCIPTAVLR
MELQRTMTKHAAVFREGKLLKEGLLKVAELCEQFKDIKTTDRTMVWNSNL
VETLELQNMLANAVHIITAMENRKESRGSHAREDFKTRVDELDYGAPLAG
QKKKPFEEHWRKHTMTFALGNKGCASIKYRPVVDTTLDSSVAPIPPAPRT
Y*

GH25972.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 22:18:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24501-PA 645 GF24501-PA 1..645 1..651 2853 81.9 Plus
Dana\GF12611-PA 661 GF12611-PA 39..661 27..651 2183 64.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 22:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13871-PA 651 GG13871-PA 1..651 1..651 3309 95.2 Plus
Dere\GG20911-PA 661 GG20911-PA 39..661 27..651 2174 63.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 22:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16714-PA 644 GH16714-PA 29..644 36..651 2756 80.5 Plus
Dgri\GH22974-PA 667 GH22974-PA 45..667 27..651 2239 63.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:07:05
Subject Length Description Subject Range Query Range Score Percent Strand
SdhAL-PA 651 CG5718-PA 1..651 1..651 3474 100 Plus
SdhA-PA 661 CG17246-PA 39..661 27..651 2182 63.7 Plus
SdhA-PC 661 CG17246-PC 39..661 27..651 2182 63.7 Plus
SdhA-PB 661 CG17246-PB 39..661 27..651 2182 63.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 22:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18459-PA 666 GI18459-PA 56..666 39..651 2258 65.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 22:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25074-PA 590 GL25074-PA 8..590 5..651 2309 71.1 Plus
Dper\GL11254-PA 661 GL11254-PA 39..661 27..651 2162 63.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 22:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19081-PA 648 GA19081-PA 8..648 5..651 2773 81.5 Plus
Dpse\GA14410-PA 661 GA14410-PA 39..661 27..651 2162 63.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 22:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24693-PA 651 GM24693-PA 1..651 1..651 3474 98.5 Plus
Dsec\GM19835-PA 636 GM19835-PA 39..636 27..651 2082 62.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 22:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12763-PA 612 GD12763-PA 1..612 1..651 3191 92 Plus
Dsim\GD25325-PA 657 GD25325-PA 39..657 27..651 2119 62.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 22:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11663-PA 651 GJ11663-PA 25..651 24..651 2751 81.4 Plus
Dvir\GJ21546-PA 665 GJ21546-PA 43..665 27..651 2235 63.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 22:18:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22213-PA 661 GK22213-PA 39..661 27..651 2182 63.8 Plus
Dwil\GK13629-PA 319 GK13629-PA 9..319 133..478 1142 65.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 22:18:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20163-PA 651 GE20163-PA 1..651 1..651 3426 96.6 Plus
Dyak\GE13850-PA 661 GE13850-PA 39..661 27..651 2169 63.7 Plus

GH25972.hyp Sequence

Translation from 66 to 2021

> GH25972.hyp
MNRLFLKRAGQHVTRSLLGPNGSRLLQVSCVRDASCKDEYSLIDHKFDAI
VIGAGGAGMRAGFGLAEKGFQTAIISKLFPTRSHTVAAQGGVNAALSNMD
KDDWKYHFYDTVKGSDWLGDQNAIHYMCREAERAVCELDMYGMPFSRKPD
GKIYQRPFGGQTLDYGKGGVARRACACADRTGHALIHTLYGQTLKHSDSC
HYFVDYFVLDLIMSQGACVGCLAWKLDDGTFHRFLAKNTVVAAGGCGRVY
FSTTAGHTCTGDGNAWVSRQELPLMDMEFVQFHPTGIYGAGCLITEGVRG
EGGFFLNCKGERFMERYAPKAKDLASRDVVARAMTMEVLAGNGCGPLKDH
VHLQLHHIDAKIIKQRLPGIMVTARIFAKVDVTKEPVPVLPTVHYNMGGI
PTDYKGRVVTIDENGKEQVVKGLYSCGETSCASVHGANRLGANSLLDLII
FGRVCALDIAANNCPGDKPPQVEDKATEKSLDNFKRLRCADGCIPTAVLR
MELQRTMTKHAAVFREGKLLKEGLLKVAELCEQFKDIKTTDRTMVWNSNL
VETLELQNMLANAVHIITAMENRKESRGSHAREDFKTRVDELDYGAPLAG
QKKKPFEEHWRKHTMTFALGNKGCASIKYRPVVDTTLDSSVAPIPPAPRT
Y*

GH25972.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG5718-PA 651 CG5718-PA 1..651 1..651 3474 100 Plus
SdhA-PA 661 CG17246-PA 39..661 27..651 2182 63.7 Plus
SdhA-PC 661 CG17246-PC 39..661 27..651 2182 63.7 Plus
SdhA-PB 661 CG17246-PB 39..661 27..651 2182 63.7 Plus