Clone GH26007 Report

Search the DGRC for GH26007

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:260
Well:7
Vector:pOT2
Associated Gene/TranscriptCG14969-RA
Protein status:GH26007.pep: gold
Preliminary Size:1918
Sequenced Size:1654

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14969 2001-01-01 Release 2 assignment
CG14969 2001-10-10 Blastp of sequenced clone
CG14969 2003-01-01 Sim4 clustering to Release 3
CG14969 2008-04-29 Release 5.5 accounting
CG14969 2008-08-15 Release 5.9 accounting
CG14969 2008-12-18 5.12 accounting

Clone Sequence Records

GH26007.complete Sequence

1654 bp (1654 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060790

> GH26007.complete
ATATTTTTGGACATCTAAATGATTGCTATTGTTTTGTTTATAAATTACAC
CAAATAATTGCTTCTATTGCAATTGGACAACAATTTGGTGTGCAGGTAAC
TGAATGCATGCAGAACTATTGATGGATGATGTCTCCAGCCGAAATACAAT
ACAAAAATATATGATTTTATAAAAGTATTTGTTAAATTGTGATATTGTTT
AGTGTGCAGAGGAAAGAATATATTTCATAGAAGAACTTGGGTGTGCGAAA
AGGGAGCACCCGTATCAACAAACAGAAGCACCAGGGGATTCGCCGGCTTC
TCGCCCTCCTGGTTTCCTCCTTCATCTCGTTCAAGTAGGCGAAGAGCAAA
GCACACCAAAAGATGCGGAGTTACATTGCACTCTTGGGGCTTATCCTAAC
TCTAAGTGGACAGTTTAACATGCTGCTGGCCGGGAAGAAACATTCCTGCG
AGAAATTGCTCGCCGATCTTGGCGATGCACAGAGCAAGTTCATCTACTGC
GCCACCACAAAATCAGTGCCCGTGAATTTGTGTGAGGGCTGCGTCGATCT
CTACCGCAATCTCACCAATGATTACGGAAACCTAATTGCGAACGCCAACT
GTTCCAAGCGTTATCTGAACTCGGACAGGATCAATATAGTGGCTACCACC
CAAGGAATCCTAACTAGCCTGTGGCAAAAGGCCAACTGCGAAAATTGCTT
CAGGGATAATTTTTGGATTGTATACAGCGATAACTCAACAAAGTTGCAAA
ATTGCTTAGAATCTGCTAGTTCGGATTTAGTTTGCTTCAAGTGCAAAAAT
GATTACGTGAGTCTAAATGATTTCTACCTTAGCATGGAAAAGAAAGTCGG
TGGAAGTGTGTGCTTCGATCTGCAGGACAATATGAACCGGACTCGTCTGA
ATTGGTCGAAAACGCTGAAATGCTGTCAACGCGAGGTGAAGCTGACCAAT
TTTCTCATCGCCGTTGGCGTAGTTGTCCTGCTGCCCATTTTCACCTTCTA
TATTACGGCAGTTGTAGTGACCAAGCGGCGGGAGGCCAATCATGGCTTGC
TCAATGAGCAGGAACCTGAACTGGACGCGCCCTCCACGTCGACGCTTATC
ACGGCTGCCGTGCTGTCCACTTCAACAGAGGATCCTGTTGCAATCTCCGC
CCGAACAGAAAAGATCGCCAATGTATTGATCGGTGCTGGAACACACCTGT
TGGACGAGTCCAGTGATGAAGAACCTCCTAGGGGGAAAAAGGTTGCTCAC
AGTCCCGCATCCGACTACTCCAGTGACGATGAGCCTCTTGAAAAGCCCAA
ACGCGCGTAACAAAATCAAAAGCGTTCATTAGAGGAACCTTCGATATCAG
CGTAAGAAGAATGTTTTTTAAATTTGAAGAAACTAGAGAAGCAAAGCTCA
AAGCATTTCAAGGATTTTCGAATTTTATTATCTTCTATGCTTCTCATATA
TAACTATATATTGCCTTGAGCCTAACCAAAAACAAAACACTTATATAACA
ATTGTATAGCCATATACATATGTGATATATTATATATATATACATGGCAA
ATCAAGACGAGAAAATCATTTTTAGCATTATATATGCACTTTATTGTTGG
CAAGTAAAACTGCACTTAAGCCTACGCGTTTATAACAAAAAAAAAAAAAA
AAAA

GH26007.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14969-RA 1916 CG14969-RA 127..1765 1..1639 8195 100 Plus
nc_10387.a 724 nc_10387.a 1..236 447..212 1180 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 3332557..3333133 1636..1062 2775 99.1 Minus
chr3L 24539361 chr3L 3333667..3334148 693..212 2410 100 Minus
chr3L 24539361 chr3L 3334207..3334418 212..1 1060 100 Minus
chr3L 24539361 chr3L 3333424..3333611 881..694 940 100 Minus
chr3L 24539361 chr3L 3333185..3333365 1062..882 905 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:08:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3333116..3333693 1639..1062 2890 100 Minus
3L 28110227 3L 3334227..3334708 693..212 2410 100 Minus
3L 28110227 3L 3334767..3334978 212..1 1060 100 Minus
3L 28110227 3L 3333984..3334171 881..694 940 100 Minus
3L 28110227 3L 3333745..3333925 1062..882 905 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:23
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 3333116..3333693 1639..1062 2890 100 Minus
3L 28103327 3L 3334227..3334708 693..212 2410 100 Minus
3L 28103327 3L 3334767..3334978 212..1 1060 100 Minus
3L 28103327 3L 3333984..3334171 881..694 940 100 Minus
3L 28103327 3L 3333745..3333925 1062..882 905 100 Minus
Blast to na_te.dros performed 2019-03-16 17:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
hopper 1435 hopper DMTRDNA 1435bp Derived from X80025 (g510507) (Rel. 44, Last updated, Version 11). 655..701 189..142 147 81.2 Minus

GH26007.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:02:53 Download gff for GH26007.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 3332557..3333132 1063..1636 99 <- Minus
chr3L 3333185..3333365 882..1062 100 <- Minus
chr3L 3333424..3333611 694..881 100 <- Minus
chr3L 3333667..3334147 213..693 100 <- Minus
chr3L 3334207..3334418 1..212 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:56:41 Download gff for GH26007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 1..948 363..1310 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:37:02 Download gff for GH26007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 1..948 363..1310 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:50:18 Download gff for GH26007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 1..948 363..1310 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:05:55 Download gff for GH26007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 1..948 363..1310 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:49:02 Download gff for GH26007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 1..948 363..1310 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:17:33 Download gff for GH26007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 1..1636 1..1636 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:37:02 Download gff for GH26007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 1..1636 1..1636 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:50:18 Download gff for GH26007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 1..1636 1..1636 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:05:55 Download gff for GH26007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 1..1636 1..1636 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:49:02 Download gff for GH26007.complete
Subject Subject Range Query Range Percent Splice Strand
CG14969-RA 1..1636 1..1636 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:02:53 Download gff for GH26007.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3334767..3334978 1..212 100   Minus
3L 3333119..3333692 1063..1636 100 <- Minus
3L 3333745..3333925 882..1062 100 <- Minus
3L 3333984..3334171 694..881 100 <- Minus
3L 3334227..3334707 213..693 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:02:53 Download gff for GH26007.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3334767..3334978 1..212 100   Minus
3L 3333119..3333692 1063..1636 100 <- Minus
3L 3333745..3333925 882..1062 100 <- Minus
3L 3333984..3334171 694..881 100 <- Minus
3L 3334227..3334707 213..693 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:02:53 Download gff for GH26007.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3334767..3334978 1..212 100   Minus
3L 3333119..3333692 1063..1636 100 <- Minus
3L 3333745..3333925 882..1062 100 <- Minus
3L 3333984..3334171 694..881 100 <- Minus
3L 3334227..3334707 213..693 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:50:18 Download gff for GH26007.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3333119..3333692 1063..1636 100 <- Minus
arm_3L 3333745..3333925 882..1062 100 <- Minus
arm_3L 3333984..3334171 694..881 100 <- Minus
arm_3L 3334227..3334707 213..693 100 <- Minus
arm_3L 3334767..3334978 1..212 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:41:52 Download gff for GH26007.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3334227..3334707 213..693 100 <- Minus
3L 3334767..3334978 1..212 100   Minus
3L 3333119..3333692 1063..1636 100 <- Minus
3L 3333745..3333925 882..1062 100 <- Minus
3L 3333984..3334171 694..881 100 <- Minus

GH26007.hyp Sequence

Translation from 362 to 1309

> GH26007.hyp
MRSYIALLGLILTLSGQFNMLLAGKKHSCEKLLADLGDAQSKFIYCATTK
SVPVNLCEGCVDLYRNLTNDYGNLIANANCSKRYLNSDRINIVATTQGIL
TSLWQKANCENCFRDNFWIVYSDNSTKLQNCLESASSDLVCFKCKNDYVS
LNDFYLSMEKKVGGSVCFDLQDNMNRTRLNWSKTLKCCQREVKLTNFLIA
VGVVVLLPIFTFYITAVVVTKRREANHGLLNEQEPELDAPSTSTLITAAV
LSTSTEDPVAISARTEKIANVLIGAGTHLLDESSDEEPPRGKKVAHSPAS
DYSSDDEPLEKPKRA*

GH26007.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:31:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14969-PA 315 CG14969-PA 1..315 1..315 1638 100 Plus

GH26007.pep Sequence

Translation from 362 to 1309

> GH26007.pep
MRSYIALLGLILTLSGQFNMLLAGKKHSCEKLLADLGDAQSKFIYCATTK
SVPVNLCEGCVDLYRNLTNDYGNLIANANCSKRYLNSDRINIVATTQGIL
TSLWQKANCENCFRDNFWIVYSDNSTKLQNCLESASSDLVCFKCKNDYVS
LNDFYLSMEKKVGGSVCFDLQDNMNRTRLNWSKTLKCCQREVKLTNFLIA
VGVVVLLPIFTFYITAVVVTKRREANHGLLNEQEPELDAPSTSTLITAAV
LSTSTEDPVAISARTEKIANVLIGAGTHLLDESSDEEPPRGKKVAHSPAS
DYSSDDEPLEKPKRA*

GH26007.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23911-PA 312 GF23911-PA 1..312 1..315 952 64.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:36:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14264-PA 317 GG14264-PA 1..317 1..315 1378 83 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:17:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG14969-PA 315 CG14969-PA 1..315 1..315 1638 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12788-PA 202 GI12788-PA 1..193 99..315 468 46.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:36:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13245-PA 292 GL13245-PA 4..270 7..275 896 66.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:36:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13394-PA 292 GA13394-PA 4..270 7..275 881 65.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14057-PA 335 GM14057-PA 1..335 1..315 1499 85.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16088-PA 289 GJ16088-PA 15..287 22..313 702 47.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:36:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20510-PA 298 GK20510-PA 5..279 7..280 701 50.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20690-PA 315 GE20690-PA 1..315 1..315 1419 84.8 Plus