Clone GH26015 Report

Search the DGRC for GH26015

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:260
Well:15
Vector:pOT2
Associated Gene/TranscriptCG8888-RA
Protein status:GH26015.pep: gold
Preliminary Size:1772
Sequenced Size:1705

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8888 2001-01-01 Release 2 assignment
CG8888 2001-09-19 Blastp of sequenced clone
CG8888 2003-01-01 Sim4 clustering to Release 3
CG8888 2008-04-29 Release 5.5 accounting
CG8888 2008-08-15 Release 5.9 accounting
CG8888 2008-12-18 5.12 accounting

Clone Sequence Records

GH26015.complete Sequence

1705 bp (1705 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058459

> GH26015.complete
CTCAGAGCGCCCAGGCCACGGGCCCCCAAACCGTACCGCTGCGGAAAATC
GATCTTGAAAATATATACAATACAAAAAAAAATCTAAAACTCTAGCACCG
GATATATTATAGTCTAAGACTACGAGAATTGCCCACTTCATTGGGAAAGT
GCGTGAAAATCCGAACATTACCATCGACCATCTACACCATCATCAGCATC
CGTCATGCAGGTCTTCGATAACAATATGCGCCGTGCCTCGCGACGCGCCT
CCTTGCGACGAGGATCCATATCGGCACTGCCGCAGAAGTCGCACGAGATT
CCCTGGGACATATTCGAGCGACTATTCATGCCCTTCCTGTTCTGCCAGGC
GGCGGCCATTGTCACATCGCACCTGCTCCACGCCCTGGACATCTCGAGCA
TCTCGACCTTCGCCGTGTTCGTCTGGTTCGCTCTGGCCACCGTGGGAGCC
GTGCTCTTCTATCACTTCGTCAAGGTTTCGGCTTCGGGCAAGGGCGTGCT
AATCACTGGCTGCGAGGCTCCACTGGCCTGGTACTTGGCCAAGAAACTGG
ACGACCTGGGCTTCACCGTTTACGCAGGATTCAACACGCCCATCGAGGAG
TCGGACGAGGCCAAGATTCTCAAGGAGGTGACCTCGGGGCGCATGAAGCT
GCTGCACTTGGACGTCACGTCGGAGAAAACCATCCTGGAAGCTGCCCGCT
ATGTGTCGCAGCACTTACCCCACGGCGCCGAAGGATTGTGGTCTGTGGTG
CACTGCGCCCACTGGATAGCTTTGGGTGAACTCGAGTGGATTCCATTTGC
GGTGCTTCGCAAGAGCTTGGACCTCAACCTTTTGGGTTCCGCTCGGCTAA
CACAAATCTTCCTGCCCCTGGTTCGCCGTGCCCATGGTCGCGTCGTTTTC
CTGACCTCCGGCCTGAATCGTGTGCCATCTCCCGTCCGGGGAATCCAGTG
TGCCACCCAAGCGGCCGTGGATTGCTTTGCCGCCTGTCTGCGCCAGGAGA
TGCGCACCCGGGGAGTGGACGTGTCCGTGGTGGCTGCCGGTGAATTTGCA
CCCGGCAACGGCTGGCTGAACGAGACCGAGCTGCGTGACCAGGCCAAGCA
AATGTGGAACCAGCTTTCCTCGGAGCAGAAGAAGACCTACGGCGAGGATT
ACTACGAGGCGGCCATGACATCGGTGGAGAAGTATTCGCGCCAGGCGGCC
GATATCCAGCCCACGCTGCGCGTCCTCATCGATGCCGTGACCAGGACCTT
CCCCATGGCCCGCTACACCCCAGTGACATCCAGCGAGCGACTGCAGATCT
TCCTAGCCGAACACCTGGCCCCCTCTCTCTACGAATCGCTGTACGGGGAG
CAGAAGAAGTTCGTCTACTGACCAACCTCCGTTCACCGTCCATCGCCAAA
GATAAGAATCTCCATCGAAACGGCCCGATATTGTAATTCGGAAATTGTTA
TTCATTTATGATTTGCCTCGAAATCCAAACCCTGCTCCTTGGTGCGCGTG
AAGGACACCCAGAAAGGAACTGTAGCCAGGAGCACTGTTCAAGGCGCTCC
GGCCGTCGATGAGCATTTACGTCCTTCTCTCGATTATTCTCATGATTTTC
CCTTTACGGAGGCGTCTGCATAATATTATTTTCTTTAGTTGCTAGAACGA
ATTGTATAACGATGAATAAAAAGAAAATGGAAACAATAAAAAAAAAAAAA
AAAAA

GH26015.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8888-RA 1771 CG8888-RA 59..1745 1..1687 8435 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 7951801..7952297 1687..1191 2425 99.2 Minus
chr2R 21145070 chr2R 7952925..7953183 1093..835 1220 98.1 Minus
chr2R 21145070 chr2R 7964273..7964521 476..228 1215 99.2 Minus
chr2R 21145070 chr2R 7966517..7966744 228..1 1140 100 Minus
chr2R 21145070 chr2R 7953734..7953942 681..473 1030 99.5 Minus
chr2R 21145070 chr2R 7953239..7953394 837..682 750 98.7 Minus
chr2R 21145070 chr2R 7952364..7952469 1195..1090 515 99.1 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:08:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:05:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12064565..12065061 1687..1191 2485 100 Minus
2R 25286936 2R 12065689..12065947 1093..835 1295 100 Minus
2R 25286936 2R 12077051..12077299 476..228 1245 100 Minus
2R 25286936 2R 12079295..12079522 228..1 1140 100 Minus
2R 25286936 2R 12066494..12066702 681..473 1045 100 Minus
2R 25286936 2R 12066006..12066161 837..682 780 100 Minus
2R 25286936 2R 12065128..12065233 1195..1090 530 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12065764..12066260 1687..1191 2485 100 Minus
2R 25260384 2R 12066888..12067146 1093..835 1295 100 Minus
2R 25260384 2R 12078250..12078498 476..228 1245 100 Minus
2R 25260384 2R 12080494..12080721 228..1 1140 100 Minus
2R 25260384 2R 12067693..12067901 681..473 1045 100 Minus
2R 25260384 2R 12067205..12067360 837..682 780 100 Minus
2R 25260384 2R 12066327..12066432 1195..1090 530 100 Minus
Blast to na_te.dros performed on 2019-03-16 01:05:17 has no hits.

GH26015.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:06:02 Download gff for GH26015.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 7952926..7953182 836..1092 98 <- Minus
chr2R 7953241..7953394 682..835 98 <- Minus
chr2R 7953734..7953940 475..681 99 <- Minus
chr2R 7951801..7952293 1195..1687 99 <- Minus
chr2R 7952365..7952466 1093..1194 99 <- Minus
chr2R 7964275..7964520 229..474 99 <- Minus
chr2R 7966517..7966744 1..228 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:16:42 Download gff for GH26015.complete
Subject Subject Range Query Range Percent Splice Strand
CG8888-RA 1..1167 205..1371 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:05:12 Download gff for GH26015.complete
Subject Subject Range Query Range Percent Splice Strand
CG8888-RA 1..1167 205..1371 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:01:46 Download gff for GH26015.complete
Subject Subject Range Query Range Percent Splice Strand
CG8888-RA 1..1167 205..1371 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:35:54 Download gff for GH26015.complete
Subject Subject Range Query Range Percent Splice Strand
CG8888-RA 1..1167 205..1371 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:22:38 Download gff for GH26015.complete
Subject Subject Range Query Range Percent Splice Strand
CG8888-RA 1..1167 205..1371 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:16:42 Download gff for GH26015.complete
Subject Subject Range Query Range Percent Splice Strand
CG8888-RA 20..1706 1..1687 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:05:12 Download gff for GH26015.complete
Subject Subject Range Query Range Percent Splice Strand
CG8888-RA 20..1706 1..1687 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:01:46 Download gff for GH26015.complete
Subject Subject Range Query Range Percent Splice Strand
CG8888-RA 22..1708 1..1687 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:35:54 Download gff for GH26015.complete
Subject Subject Range Query Range Percent Splice Strand
CG8888-RA 20..1706 1..1687 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:22:38 Download gff for GH26015.complete
Subject Subject Range Query Range Percent Splice Strand
CG8888-RA 22..1708 1..1687 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:06:02 Download gff for GH26015.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12064565..12065057 1195..1687 100 <- Minus
2R 12065129..12065230 1093..1194 100 <- Minus
2R 12065690..12065946 836..1092 100 <- Minus
2R 12066008..12066161 682..835 100 <- Minus
2R 12066494..12066700 475..681 100 <- Minus
2R 12077053..12077298 229..474 100 <- Minus
2R 12079295..12079522 1..228 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:06:02 Download gff for GH26015.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12064565..12065057 1195..1687 100 <- Minus
2R 12065129..12065230 1093..1194 100 <- Minus
2R 12065690..12065946 836..1092 100 <- Minus
2R 12066008..12066161 682..835 100 <- Minus
2R 12066494..12066700 475..681 100 <- Minus
2R 12077053..12077298 229..474 100 <- Minus
2R 12079295..12079522 1..228 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:06:02 Download gff for GH26015.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12064565..12065057 1195..1687 100 <- Minus
2R 12065129..12065230 1093..1194 100 <- Minus
2R 12065690..12065946 836..1092 100 <- Minus
2R 12066008..12066161 682..835 100 <- Minus
2R 12066494..12066700 475..681 100 <- Minus
2R 12077053..12077298 229..474 100 <- Minus
2R 12079295..12079522 1..228 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:01:46 Download gff for GH26015.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7952070..7952562 1195..1687 100 <- Minus
arm_2R 7952634..7952735 1093..1194 100 <- Minus
arm_2R 7953195..7953451 836..1092 100 <- Minus
arm_2R 7953513..7953666 682..835 100 <- Minus
arm_2R 7953999..7954205 475..681 100 <- Minus
arm_2R 7964558..7964803 229..474 100 <- Minus
arm_2R 7966800..7967027 1..228 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:12:56 Download gff for GH26015.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12078252..12078497 229..474 100 <- Minus
2R 12080494..12080721 1..228 100   Minus
2R 12065764..12066256 1195..1687 100 <- Minus
2R 12066328..12066429 1093..1194 100 <- Minus
2R 12066889..12067145 836..1092 100 <- Minus
2R 12067207..12067360 682..835 100 <- Minus
2R 12067693..12067899 475..681 100 <- Minus

GH26015.pep Sequence

Translation from 204 to 1370

> GH26015.pep
MQVFDNNMRRASRRASLRRGSISALPQKSHEIPWDIFERLFMPFLFCQAA
AIVTSHLLHALDISSISTFAVFVWFALATVGAVLFYHFVKVSASGKGVLI
TGCEAPLAWYLAKKLDDLGFTVYAGFNTPIEESDEAKILKEVTSGRMKLL
HLDVTSEKTILEAARYVSQHLPHGAEGLWSVVHCAHWIALGELEWIPFAV
LRKSLDLNLLGSARLTQIFLPLVRRAHGRVVFLTSGLNRVPSPVRGIQCA
TQAAVDCFAACLRQEMRTRGVDVSVVAAGEFAPGNGWLNETELRDQAKQM
WNQLSSEQKKTYGEDYYEAAMTSVEKYSRQAADIQPTLRVLIDAVTRTFP
MARYTPVTSSERLQIFLAEHLAPSLYESLYGEQKKFVY*

GH26015.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12646-PA 388 GF12646-PA 1..388 1..388 2015 96.6 Plus
Dana\GF23376-PA 334 GF23376-PA 29..306 98..381 204 28.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22610-PA 388 GG22610-PA 1..388 1..388 2066 99 Plus
Dere\GG11695-PA 335 GG11695-PA 19..305 87..380 203 28.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21043-PA 388 GH21043-PA 1..388 1..388 1883 92 Plus
Dgri\GH14332-PA 337 GH14332-PA 30..220 98..282 162 28.5 Plus
Dgri\GH24762-PA 336 GH24762-PA 30..301 98..363 157 26.5 Plus
Dgri\GH24722-PA 325 GH24722-PA 11..235 69..273 150 26.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8888-PA 388 CG8888-PA 1..388 1..388 1999 100 Plus
sro-PA 335 CG12068-PA 29..305 98..380 195 27.6 Plus
CG13377-PB 330 CG13377-PB 11..236 69..273 155 28.4 Plus
CG13377-PA 330 CG13377-PA 11..236 69..273 155 28.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18645-PA 388 GI18645-PA 1..388 1..388 1870 92.5 Plus
Dmoj\GI10427-PA 331 GI10427-PA 30..216 98..281 167 30.7 Plus
Dmoj\GI21821-PA 324 GI21821-PA 11..234 69..273 157 27.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17387-PA 319 GL17387-PA 91..319 160..388 1191 94.8 Plus
Dper\GL17387-PA 319 GL17387-PA 1..91 1..91 388 94.5 Plus
Dper\GL23722-PA 334 GL23722-PA 20..291 90..354 168 28.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21392-PA 388 GA21392-PA 1..388 1..388 1927 94.8 Plus
Dpse\GA11371-PA 334 GA11371-PA 29..291 98..354 168 28.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20389-PA 478 GM20389-PA 178..478 88..388 1583 98.3 Plus
Dsec\GM20389-PA 478 GM20389-PA 1..116 1..106 489 83.6 Plus
Dsec\GM12822-PA 335 GM12822-PA 29..305 98..380 195 27.6 Plus
Dsec\GM19048-PA 330 GM19048-PA 11..236 69..273 160 28.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25863-PA 242 GD25863-PA 1..242 147..388 1297 100 Plus
Dsim\GD21466-PA 335 GD21466-PA 29..305 98..380 196 27.6 Plus
Dsim\GD16487-PA 330 GD16487-PA 11..236 69..273 159 28.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21661-PA 550 GJ21661-PA 1..311 1..311 1522 93.9 Plus
Dvir\GJ16995-PA 324 GJ16995-PA 11..234 69..273 155 27.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21980-PA 388 GK21980-PA 1..388 1..388 1905 92.8 Plus
Dwil\GK11925-PA 329 GK11925-PA 29..216 98..281 165 28.9 Plus
Dwil\GK10120-PA 344 GK10120-PA 21..249 69..273 156 27.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13478-PA 388 GE13478-PA 1..388 1..388 2058 98.7 Plus
Dyak\GE23885-PA 335 GE23885-PA 29..305 98..380 199 28 Plus

GH26015.hyp Sequence

Translation from 204 to 1370

> GH26015.hyp
MQVFDNNMRRASRRASLRRGSISALPQKSHEIPWDIFERLFMPFLFCQAA
AIVTSHLLHALDISSISTFAVFVWFALATVGAVLFYHFVKVSASGKGVLI
TGCEAPLAWYLAKKLDDLGFTVYAGFNTPIEESDEAKILKEVTSGRMKLL
HLDVTSEKTILEAARYVSQHLPHGAEGLWSVVHCAHWIALGELEWIPFAV
LRKSLDLNLLGSARLTQIFLPLVRRAHGRVVFLTSGLNRVPSPVRGIQCA
TQAAVDCFAACLRQEMRTRGVDVSVVAAGEFAPGNGWLNETELRDQAKQM
WNQLSSEQKKTYGEDYYEAAMTSVEKYSRQAADIQPTLRVLIDAVTRTFP
MARYTPVTSSERLQIFLAEHLAPSLYESLYGEQKKFVY*

GH26015.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8888-PA 388 CG8888-PA 1..388 1..388 1999 100 Plus
sro-PA 335 CG12068-PA 29..305 98..380 195 27.6 Plus
CG13377-PB 330 CG13377-PB 11..236 69..273 155 28.4 Plus
CG13377-PA 330 CG13377-PA 11..236 69..273 155 28.4 Plus