Clone GH26062 Report

Search the DGRC for GH26062

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:260
Well:62
Vector:pOT2
Associated Gene/TranscriptCG5946-RA
Protein status:GH26062.pep: gold
Sequenced Size:1910

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5946 2002-11-11 Blastp of sequenced clone
CG5946 2008-04-29 Release 5.5 accounting
CG5946 2008-08-15 Release 5.9 accounting
zetaCOP 2008-08-15 Release 5.9 accounting
zetaCOP 2008-12-18 5.12 accounting
CG5946 2008-12-18 5.12 accounting

Clone Sequence Records

GH26062.complete Sequence

1910 bp (1910 high quality bases) assembled on 2002-11-11

GenBank Submission: BT001444

> GH26062.complete
AAGACACGAAAACAAGTGAAGATGGACGGATTTATGATGGATATCATCAA
GGGCATGTGCATCATGGACAACGATGGCAACCGCATCCTGGCCAAGTACT
ACGACAAGAACATCCTGTCCACGTTGAAGGAGCAGAAGGCCTTCGAAAAG
AATCTGTTCAATAAGACGCACCGCTCCAACACGGAGATCATTATGCTGGA
CGGACTCACCTGCGTGTACAAGAGCAACGTGGACCTCTTCTTCTACGTGA
TGGGCAACGCCTACGAGAACGAGCTCATCCTGCTGTCCGTGCTCAACTGC
CTCTACGATTCCATTAGCCTGATCCTCAAGAAGAACGTTGAGAAGCGCCT
GGTGCTGGAAAACCTGGAGATCATCATGCTGGCATTTGACGAGATCTGCG
ACGGAGGCATTATTCTGGATGCGGATCCCTCGTCGGTGGTGAAACGCGTT
GATCTGCGCAACGATGACATTCCCATTGCCGAACAGACCGTTGCCCAGGT
TCTGCAATCGGCACGTGAACAACTCAAATGGTCCATTCTGAAGTGATGTG
AAATGGGGTGGCGGAAGAGAGGAAGCCACTTCCGTGCCGCGTTGTCGCAA
TACATTCGATTCTTCTTTTAGCGCCCACTTGTTTTCGCCTAGTTGTAAAG
CATATAATAATACATACATTTAACTGGAAAAAAAAAAAAAAAAACTCGAG
CGGTCGCACGTATTTGTTAACTTACGGAGTTCGGTGTGCAATTCAAATCG
GAAATTAGCCAATTTTTAACAAGTGTTTTTGTTTTAATATGACGGAATTC
GATTTTGTGCCACTCGCCGTGGGTGTGGTAGCCGTACTCGCCGGCGCCCT
GATCGTCCACTATCTGCTGAATAAGAAGTCCACGAAACCACGCCGGGAAC
CCAATCGCACCGCTCGGCTGCGCACACTTGTGGATCCCAATGACAAGTAC
CTGCTGCCTCTCATCGAAAAGGAGAATCTGAGCCATGACACTAGGAGATT
CCGGTTTGGATTGCCCTCCAAGCAGCATGTCCTTGGCCTGCCCGTTGGCC
AGCACATTCATCTGATCGCCACCATCGACAATGAGCTAATAATTCGGCCA
TACACTCCTATATCGTCTGATGAGGATGTGGGCTACGTGGACCTAGTCGT
CAAGGTGTACTTCAAGGATTCGCATCCCAAGTTCCCGGCCGGCGGCAAAA
TGACACAACACCTGGAGCAGCTCGAGTTGGGGGACAAGATCTCGTTCCGT
GGTCCCTCGGGTAGGCTACAATATCTCGGCAATGGCACCTTCTCCATCAA
AAAGTTGCGCAAGGATCCTCCAAAGCACGTGACCGCCAAGCGGGTCAACA
TGATTGCCGGCGGCACTGGCATTACTCCAATGCTTCAATTGGCCAGGGAA
GTTCTCAAGCGCAGCGATAAGGATAAGACTGAACTGGCGTTGCTGTTCGC
CAATCAGAGCGAAAAGGACATTCTACTGCGTGCAGAGTTGGACGAACTGG
CCCAGAAGCATCCTGACCAGTTCAAGATCTGGTACACAGTCGACAAGGCA
AACGAAGGTTGGCAGTATAGCGTTGGCTTCATCAATGAGGAAATGATCGC
CGCCCACCTGCTTCCGGCCAAGGACGATACCATTGTGTTGCTTTGCGGCC
CACCACCAATGATTAACTTTGCCTGCAATCCGGCGCTGGACAAGCTTGGC
TACCATCCGGACACCCGTTTTGCCTACTAATATGATGGACATTATGGGAC
GAAATTGCATTTTCGTTGTGTTATATTCCTCTTTTTTTATCTGTTGTCTC
TTACCAGCTCATCAAAATCCAAGAGTTCGCCAAGATTTCGGCAATGTGAT
TGAAAACCAAGCGAATAAAAACATTAATTAGTTTAAAGTTTAAAAAAAAA
AAAAAAAAAA

GH26062.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:34:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG5946-RA 1395 CG5946-RA 95..1289 700..1894 5960 99.9 Plus
CG5946-RF 1437 CG5946-RF 348..1437 802..1891 5435 99.9 Plus
CG5946-RE 2169 CG5946-RE 309..1066 802..1559 3775 99.8 Plus
CG5946-RE 2169 CG5946-RE 1834..2169 1556..1891 1680 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:17:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11809124..11809777 1457..804 3255 99.8 Minus
chr3L 24539361 chr3L 16662805..16663173 407..39 1845 100 Minus
chr3L 24539361 chr3L 11807853..11808188 1891..1556 1665 99.7 Minus
chr3L 24539361 chr3L 16661411..16661592 678..497 910 100 Minus
chr3L 24539361 chr3L 11808956..11809059 1559..1456 520 100 Minus
chr3L 24539361 chr3L 11810690..11810793 803..700 505 99 Minus
chr3L 24539361 chr3L 16662200..16662293 500..407 470 100 Minus
chr3L 24539361 chr3L 16663229..16663268 40..1 200 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:08:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:17:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11818254..11818907 1457..804 3255 99.8 Minus
3L 28110227 3L 16673057..16673425 407..39 1845 100 Minus
3L 28110227 3L 11816980..11817318 1894..1556 1695 100 Minus
3L 28110227 3L 16671663..16671844 678..497 910 100 Minus
3L 28110227 3L 11818086..11818189 1559..1456 520 100 Minus
3L 28110227 3L 11819821..11819924 803..700 520 100 Minus
3L 28110227 3L 16672452..16672545 500..407 470 100 Minus
3L 28110227 3L 16673481..16673520 40..1 200 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11811354..11812007 1457..804 3255 99.8 Minus
3L 28103327 3L 16666157..16666525 407..39 1845 100 Minus
3L 28103327 3L 11810080..11810418 1894..1556 1695 100 Minus
3L 28103327 3L 16664763..16664944 678..497 910 100 Minus
3L 28103327 3L 11812921..11813024 803..700 520 100 Minus
3L 28103327 3L 11811186..11811289 1559..1456 520 100 Minus
3L 28103327 3L 16665552..16665645 500..407 470 100 Minus
3L 28103327 3L 16666581..16666620 40..1 200 100 Minus
Blast to na_te.dros performed 2019-03-16 05:17:52
Subject Length Description Subject Range Query Range Score Percent Strand
412 7567 412 412 7567bp 1170..1215 649..694 122 73.9 Plus

GH26062.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:18:58 Download gff for GH26062.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11807853..11808186 1558..1891 99 <- Minus
chr3L 11808958..11809057 1458..1557 100 <- Minus
chr3L 11809124..11809777 804..1457 99 <- Minus
chr3L 11810690..11810792 701..803 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:18:18 Download gff for GH26062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 1..942 789..1730 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:05:58 Download gff for GH26062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 1..942 789..1730 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:35:06 Download gff for GH26062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 1..942 789..1730 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:55:50 Download gff for GH26062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 1..942 789..1730 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:59:48 Download gff for GH26062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 1..942 789..1730 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:18:14 Download gff for GH26062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 26..1210 700..1884 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:05:58 Download gff for GH26062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 26..1217 700..1891 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:35:06 Download gff for GH26062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 33..1224 700..1891 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:55:50 Download gff for GH26062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 26..1210 700..1884 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:59:48 Download gff for GH26062.complete
Subject Subject Range Query Range Percent Splice Strand
CG5946-RA 33..1224 700..1891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:18:58 Download gff for GH26062.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11816983..11817316 1558..1891 100 <- Minus
3L 11818088..11818187 1458..1557 100 <- Minus
3L 11818254..11818907 804..1457 99 <- Minus
3L 11819821..11819926 694..803 96 -> Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:18:58 Download gff for GH26062.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11816983..11817316 1558..1891 100 <- Minus
3L 11818088..11818187 1458..1557 100 <- Minus
3L 11818254..11818907 804..1457 99 <- Minus
3L 11819821..11819926 694..803 96 -> Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:18:58 Download gff for GH26062.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11816983..11817316 1558..1891 100 <- Minus
3L 11818088..11818187 1458..1557 100 <- Minus
3L 11818254..11818907 804..1457 99 <- Minus
3L 11819821..11819926 694..803 96 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:35:06 Download gff for GH26062.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11810083..11810416 1558..1891 100 <- Minus
arm_3L 11811188..11811287 1458..1557 100 <- Minus
arm_3L 11811354..11812007 804..1457 99 <- Minus
arm_3L 11812921..11813026 694..803 96 -> Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:28:15 Download gff for GH26062.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11810083..11810416 1558..1891 100 <- Minus
3L 11811188..11811287 1458..1557 100 <- Minus
3L 11811354..11812007 804..1457 99 <- Minus
3L 11812921..11813026 694..803 96 -> Minus

GH26062.pep Sequence

Translation from 788 to 1729

> GH26062.pep
MTEFDFVPLAVGVVAVLAGALIVHYLLNKKSTKPRREPNRTARLRTLVDP
NDKYLLPLIEKENLSHDTRRFRFGLPSKQHVLGLPVGQHIHLIATIDNEL
IIRPYTPISSDEDVGYVDLVVKVYFKDSHPKFPAGGKMTQHLEQLELGDK
ISFRGPSGRLQYLGNGTFSIKKLRKDPPKHVTAKRVNMIAGGTGITPMLQ
LAREVLKRSDKDKTELALLFANQSEKDILLRAELDELAQKHPDQFKIWYT
VDKANEGWQYSVGFINEEMIAAHLLPAKDDTIVLLCGPPPMINFACNPAL
DKLGYHPDTRFAY*

GH26062.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 07:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25295-PA 313 GF25295-PA 1..313 1..313 1522 93.9 Plus
Dana\GF12339-PA 534 GF12339-PA 288..527 57..308 185 25.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 07:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12996-PA 384 GG12996-PA 1..384 1..313 1512 77.9 Plus
Dere\GG21968-PA 535 GG21968-PA 297..524 58..304 167 24.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 07:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14799-PA 316 GH14799-PA 4..316 1..313 1477 90.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG5946-PA 313 CG5946-PA 1..313 1..313 1638 100 Plus
CG5946-PF 316 CG5946-PF 4..316 1..313 1616 98.7 Plus
CG5946-PB 316 CG5946-PB 4..316 1..313 1616 98.7 Plus
CG5946-PC 313 CG5946-PC 1..313 1..313 1503 90.4 Plus
CG5946-PD 316 CG5946-PD 4..316 1..313 1481 89.1 Plus
CG5946-PG 330 CG5946-PG 4..330 1..313 1456 85.3 Plus
CG5946-PE 263 CG5946-PE 4..260 1..257 1304 98.4 Plus
CG11257-PA 535 CG11257-PA 297..509 58..288 171 24.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 07:28:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11853-PA 316 GI11853-PA 4..316 1..313 1493 87.2 Plus
Dmoj\GI21190-PA 528 GI21190-PA 255..522 23..308 165 25.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 07:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20725-PA 316 GL20725-PA 4..316 1..313 1468 90.4 Plus
Dper\GL10825-PA 536 GL10825-PA 283..529 43..308 174 25.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 07:28:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19251-PA 316 GA19251-PA 4..316 1..313 1471 90.7 Plus
Dpse\GA10870-PA 536 GA10870-PA 283..529 43..308 173 25.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 07:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24706-PA 313 GM24706-PA 1..313 1..313 1655 98.7 Plus
Dsec\GM21957-PA 535 GM21957-PA 297..509 58..288 173 24.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 07:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12773-PA 316 GD12773-PA 4..316 1..313 1637 97.8 Plus
Dsim\GD11452-PA 535 GD11452-PA 297..509 58..288 173 24.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 07:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13551-PA 316 GJ13551-PA 4..316 1..313 1496 91.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 07:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25189-PA 316 GK25189-PA 4..316 1..313 1512 93.6 Plus
Dwil\GK22167-PA 528 GK22167-PA 257..502 23..288 179 26.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 07:28:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20176-PA 316 GE20176-PA 4..316 1..313 1599 95.2 Plus
Dyak\GE12047-PA 537 GE12047-PA 299..511 58..288 171 23.9 Plus

GH26062.hyp Sequence

Translation from 788 to 1729

> GH26062.hyp
MTEFDFVPLAVGVVAVLAGALIVHYLLNKKSTKPRREPNRTARLRTLVDP
NDKYLLPLIEKENLSHDTRRFRFGLPSKQHVLGLPVGQHIHLIATIDNEL
IIRPYTPISSDEDVGYVDLVVKVYFKDSHPKFPAGGKMTQHLEQLELGDK
ISFRGPSGRLQYLGNGTFSIKKLRKDPPKHVTAKRVNMIAGGTGITPMLQ
LAREVLKRSDKDKTELALLFANQSEKDILLRAELDELAQKHPDQFKIWYT
VDKANEGWQYSVGFINEEMIAAHLLPAKDDTIVLLCGPPPMINFACNPAL
DKLGYHPDTRFAY*

GH26062.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:32:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG5946-PA 313 CG5946-PA 1..313 1..313 1638 100 Plus
CG5946-PF 316 CG5946-PF 4..316 1..313 1616 98.7 Plus
CG5946-PB 316 CG5946-PB 4..316 1..313 1616 98.7 Plus
CG5946-PC 313 CG5946-PC 1..313 1..313 1503 90.4 Plus
CG5946-PD 316 CG5946-PD 4..316 1..313 1481 89.1 Plus