Clone GH26184 Report

Search the DGRC for GH26184

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:261
Well:84
Vector:pOT2
Associated Gene/TranscriptCG2010-RB
Protein status:GH26184.pep: gold
Preliminary Size:2253
Sequenced Size:2264

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2010 2001-01-01 Release 2 assignment
CG2010 2001-11-08 Blastp of sequenced clone
CG2010 2003-01-01 Sim4 clustering to Release 3
CG2010 2008-04-29 Release 5.5 accounting
CG2010 2008-08-15 Release 5.9 accounting
CG2010 2008-12-18 5.12 accounting

Clone Sequence Records

GH26184.complete Sequence

2264 bp (2264 high quality bases) assembled on 2001-11-08

GenBank Submission: AY069210

> GH26184.complete
AGCCGTCGAGAACGCGGAGCATTCGCCCATGTAAAGCCGCAGAATCCGTC
GATTTTCGCCGGAATTTATCAATCCGATTTGCCAGTAATTTGCAACAGAA
TAAGTGAATTTGCCAAGTGAATTTCCCTAGTTTTTTTTTTCAACTTGCAA
CGAAAGTGCTAAAGTTACGAAACTGCACTTTCCACGTTGCACTTGCAACC
CCAACAGTTTTTTCCACCAGATCCACCAGCTGAGGGAAAACTATTAATAA
ACCGGGCGAAGGATGAAACAAATTCAGATGTGACGCCCATCCTCGTCGAA
AATCAAAAGTCGCAAGTGAACAATTTAGATACATAGATACATAGATACAT
AGATAGAAGCGGACGGATCCAGCAAGACCATACATACATACATATTGTAC
AGCTGAGACAGCGAACACCTTCAGCTTTCCGGCTGATCCCAATCCAAATC
GCGAACTAGAGCGCAGTGCCCACCATGGATAATTGGAATGTTTTGGCAGC
GCAAACCTCCTCGCAGGCCATCGGACTCCACGACTCTGGCGTGGTGAAGA
CCCGACTGACCATTGAGAAGCTGCCGGACAAGGTGCTGCTGCACATCTTC
TCGTATCTGTCGCACCGCGAGATCTGCCGCCTGGCCAGGATTTGCCGACG
ATGGCGGCAGATTGCATACGACACGCGGCTGTGGAAGAACGTGAGCCTGC
GACCGGAGGTCTCCGGACTGCACGTGGGCTCGCTGGAGATGCTGCTGCAG
CTGATCTCGGTGAGATTCGGACCGACTCTGCGCTACATCGAGCTGCCCAT
CGAGCTGATCACGCACACGGTGCTCCACGAACTGTCCGCCAAGTGCCCCA
ATTTGACCCACATGCTGCTGGACTTCTCCACAGCCATGCAGCTGCACGAC
TTCAGCGAGATGCAGGCCTTTCCCACCAAGCTGCGCTACATGTGCGTCTG
CCTCTCGGAGGTGATCTTCATGGAGGGCTTCATGCGCAAAATCTACAACT
TCATCAACGGCCTGGAGGTGCTGCATCTAATTGGCACGTACGAGAAGTGC
GAGGAGGAGGAGGAGGAGATCTACGAGGTGATCAACGTGCACAAGCTCAA
GTCGGCCACGCCCAATTTGCGTGTGATCAACCTGTACGGCATCAACTTCA
TCGATGACTCGCACATCGACGCCTTCAGCTCGAACTGCATCCAGCTGGAG
TGCCTGGCCGTCAACTTCTGCAACAAAGTGACCGGCTCCACCCTGAAGAC
CCTGATCCAGCGTTCCAAGCGCCTCACCTGCCTGCTCATGAACGGCACCA
GCCTGAAGTCGGAGTTCGTCATGCAGGCCGAGTGGGACAAGTGCGCCCTG
CAGGAGCTGGACATCACGGCCACCGATCTTTCGACCGAATGCCTCGTGGA
CATGCTGAGCAGGATCCCCAGCCTCAAGTTCCTCTCAGCCGGCCAGATCA
ATGGCTTCAACGACAGCGTTCTCAAGCAGTGGATGGAATCGGGCACCACC
AGGTCGCTCATTTCCCTGGACTTGGACTCCTCGGACAACATCTCGGATGA
GGGCCTGCTTAAGTTTATACAGCGCCAGGGTCATCAGCTGAGCGCCTGCT
GTCTCTCGGGCATGCCCCACATCACCGACCAGCTGTGGATGAGCATCCTG
CCCCTGCTGGGCAACTGCAAGATCATTGTTATGGGCACCGCAGAGAAGCT
GGGCGTCAACATCCACGTGGACCAGCTGATGGACACCATCGCCTCGAATT
GCGGCAACTTGGAGCGGCTGGAGCTGCGCTGGGATCCGGACAACCTGCGC
TTCTCCGACAAGAGCCAGAAGGCCATCGATATTCTGCGCGTCAAGTGCCT
CAAGCTGCGCTGCATGGTGCTCAGCGATGGTCGCTACTATGAGACGGTCA
AGGCCAACTTTGAGCGTGCCGATCGCATCACCGTGGTGCGCACCACCACC
TGCTGCCGTGTGTCTCCCTATCACCTGCTCCGCAACTACAACGATTTGAT
TTTCAACTGAGCCTCTGAGGTTCAGAGCTGAAAGCCAAGAGAGGATTGGT
AGCTTGCACTTACCCGGTTGCAGAGCTCTGGATGGGATTTACCCACAACA
GGGCCGGAGGAGAAGCAATGTTTCTGTGTGTTTTCGCTTACAATAAGAGT
GTTTTAATGTTTTCTGTATTTTCCGCTTCTTTCGTTTAATTACTTTAAAT
CTAAATAAACGTACATAGGTAATTTAAATAAAAACAAAAAAAAAAAAAAA
AAAAAAAAAAAAAA

GH26184.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-RB 2239 CG2010-RB 1..2239 1..2239 11195 100 Plus
CG2010.e 2132 CG2010.e 50..2132 157..2239 10415 100 Plus
CG2010.b 2020 CG2010.b 106..2020 325..2239 9575 100 Plus
CG2010.b 2020 CG2010.b 1..84 1..84 420 100 Plus
CG2010.e 2132 CG2010.e 20..49 1..30 150 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:54:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 25320037..25320659 882..1504 3025 99 Plus
chr3R 27901430 chr3R 25321212..25321575 1872..2235 1760 98.9 Plus
chr3R 27901430 chr3R 25319651..25319976 558..883 1600 99.4 Plus
chr3R 27901430 chr3R 25317441..25317762 1..324 1495 98.1 Plus
chr3R 27901430 chr3R 25318207..25318440 325..558 1140 99.1 Plus
chr3R 27901430 chr3R 25320946..25321155 1665..1874 960 97.1 Plus
chr3R 27901430 chr3R 25320714..25320884 1501..1671 810 98.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:08:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:54:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29497385..29498007 882..1504 3115 100 Plus
3R 32079331 3R 29498560..29498927 1872..2239 1840 100 Plus
3R 32079331 3R 29496999..29497324 558..883 1630 100 Plus
3R 32079331 3R 29494802..29495125 1..324 1620 100 Plus
3R 32079331 3R 29495568..29495801 325..558 1170 100 Plus
3R 32079331 3R 29498294..29498503 1665..1874 1035 99.5 Plus
3R 32079331 3R 29498062..29498232 1501..1671 855 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 29238216..29238838 882..1504 3115 100 Plus
3R 31820162 3R 29239391..29239758 1872..2239 1840 100 Plus
3R 31820162 3R 29237830..29238155 558..883 1630 100 Plus
3R 31820162 3R 29235633..29235956 1..324 1620 100 Plus
3R 31820162 3R 29236399..29236632 325..558 1170 100 Plus
3R 31820162 3R 29239125..29239334 1665..1874 1035 99.5 Plus
3R 31820162 3R 29238893..29239063 1501..1671 855 100 Plus
Blast to na_te.dros performed 2019-03-15 11:54:18
Subject Length Description Subject Range Query Range Score Percent Strand
G5 4856 G5 G5_DM 4856bp 2601..2665 1735..1670 120 66.7 Minus

GH26184.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:55:15 Download gff for GH26184.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 25318240..25318440 358..558 99 -> Plus
chr3R 25319652..25319976 559..883 99 -> Plus
chr3R 25317441..25317762 1..324 98 == Plus
chr3R 25320039..25320657 884..1502 99 -> Plus
chr3R 25320716..25320883 1503..1670 98 -> Plus
chr3R 25320952..25321155 1671..1874 97 -> Plus
chr3R 25321215..25321575 1875..2235 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:57:02 Download gff for GH26184.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RB 1..1536 475..2010 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:34:37 Download gff for GH26184.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RB 1..1536 475..2010 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:34:18 Download gff for GH26184.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RB 1..1536 475..2010 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:02:09 Download gff for GH26184.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RB 1..1536 475..2010 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:45:09 Download gff for GH26184.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RB 1..1536 475..2010 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:14:15 Download gff for GH26184.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RB 1..2235 1..2235 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:34:37 Download gff for GH26184.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RB 1..2235 1..2235 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:34:18 Download gff for GH26184.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RB 21..2255 1..2235 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:02:10 Download gff for GH26184.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RB 1..2235 1..2235 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:45:09 Download gff for GH26184.complete
Subject Subject Range Query Range Percent Splice Strand
CG2010-RB 21..2255 1..2235 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:15 Download gff for GH26184.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29498563..29498923 1875..2235 100   Plus
3R 29494802..29495125 1..324 100 -> Plus
3R 29495568..29495801 325..558 100 -> Plus
3R 29497000..29497324 559..883 100 -> Plus
3R 29497387..29498005 884..1502 100 -> Plus
3R 29498064..29498231 1503..1670 100 -> Plus
3R 29498300..29498503 1671..1874 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:15 Download gff for GH26184.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29498563..29498923 1875..2235 100   Plus
3R 29494802..29495125 1..324 100 -> Plus
3R 29495568..29495801 325..558 100 -> Plus
3R 29497000..29497324 559..883 100 -> Plus
3R 29497387..29498005 884..1502 100 -> Plus
3R 29498064..29498231 1503..1670 100 -> Plus
3R 29498300..29498503 1671..1874 100 -> Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:55:15 Download gff for GH26184.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29498563..29498923 1875..2235 100   Plus
3R 29494802..29495125 1..324 100 -> Plus
3R 29495568..29495801 325..558 100 -> Plus
3R 29497000..29497324 559..883 100 -> Plus
3R 29497387..29498005 884..1502 100 -> Plus
3R 29498064..29498231 1503..1670 100 -> Plus
3R 29498300..29498503 1671..1874 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:34:18 Download gff for GH26184.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25324285..25324645 1875..2235 100   Plus
arm_3R 25320524..25320847 1..324 100 -> Plus
arm_3R 25321290..25321523 325..558 100 -> Plus
arm_3R 25322722..25323046 559..883 100 -> Plus
arm_3R 25323109..25323727 884..1502 100 -> Plus
arm_3R 25323786..25323953 1503..1670 100 -> Plus
arm_3R 25324022..25324225 1671..1874 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:39:11 Download gff for GH26184.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29235633..29235956 1..324 100 -> Plus
3R 29236399..29236632 325..558 100 -> Plus
3R 29237831..29238155 559..883 100 -> Plus
3R 29238218..29238836 884..1502 100 -> Plus
3R 29238895..29239062 1503..1670 100 -> Plus
3R 29239131..29239334 1671..1874 100 -> Plus
3R 29239394..29239754 1875..2235 100   Plus

GH26184.pep Sequence

Translation from 474 to 2009

> GH26184.pep
MDNWNVLAAQTSSQAIGLHDSGVVKTRLTIEKLPDKVLLHIFSYLSHREI
CRLARICRRWRQIAYDTRLWKNVSLRPEVSGLHVGSLEMLLQLISVRFGP
TLRYIELPIELITHTVLHELSAKCPNLTHMLLDFSTAMQLHDFSEMQAFP
TKLRYMCVCLSEVIFMEGFMRKIYNFINGLEVLHLIGTYEKCEEEEEEIY
EVINVHKLKSATPNLRVINLYGINFIDDSHIDAFSSNCIQLECLAVNFCN
KVTGSTLKTLIQRSKRLTCLLMNGTSLKSEFVMQAEWDKCALQELDITAT
DLSTECLVDMLSRIPSLKFLSAGQINGFNDSVLKQWMESGTTRSLISLDL
DSSDNISDEGLLKFIQRQGHQLSACCLSGMPHITDQLWMSILPLLGNCKI
IVMGTAEKLGVNIHVDQLMDTIASNCGNLERLELRWDPDNLRFSDKSQKA
IDILRVKCLKLRCMVLSDGRYYETVKANFERADRITVVRTTTCCRVSPYH
LLRNYNDLIFN*

GH26184.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:29:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23347-PA 512 GF23347-PA 1..512 1..511 2670 97.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:29:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11667-PA 515 GG11667-PA 6..515 2..511 2500 95.3 Plus
Dere\GG11666-PA 83 GG11666-PA 1..28 1..28 145 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18900-PA 511 GH18900-PA 1..511 1..511 2527 94.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:15:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-PC 511 CG2010-PC 1..511 1..511 2664 100 Plus
CG2010-PB 511 CG2010-PB 1..511 1..511 2664 100 Plus
CG2010-PA 515 CG2010-PA 6..515 2..511 2529 95.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23115-PA 510 GI23115-PA 1..510 1..511 2418 95.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13891-PA 510 GL13891-PA 1..510 1..511 2639 96.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15183-PA 510 GA15183-PA 1..510 1..511 2639 96.5 Plus
Dpse\GA15183-PB 515 GA15183-PB 6..515 2..511 2463 93.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12789-PA 511 GM12789-PA 1..511 1..511 2715 99.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:29:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21439-PA 511 GD21439-PA 1..511 1..511 2715 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10605-PA 512 GJ10605-PA 1..512 1..511 2545 94.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11898-PA 511 GK11898-PA 1..511 1..511 2679 97.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23855-PA 511 GE23855-PA 1..511 1..511 2715 99.4 Plus

GH26184.hyp Sequence

Translation from 474 to 2009

> GH26184.hyp
MDNWNVLAAQTSSQAIGLHDSGVVKTRLTIEKLPDKVLLHIFSYLSHREI
CRLARICRRWRQIAYDTRLWKNVSLRPEVSGLHVGSLEMLLQLISVRFGP
TLRYIELPIELITHTVLHELSAKCPNLTHMLLDFSTAMQLHDFSEMQAFP
TKLRYMCVCLSEVIFMEGFMRKIYNFINGLEVLHLIGTYEKCEEEEEEIY
EVINVHKLKSATPNLRVINLYGINFIDDSHIDAFSSNCIQLECLAVNFCN
KVTGSTLKTLIQRSKRLTCLLMNGTSLKSEFVMQAEWDKCALQELDITAT
DLSTECLVDMLSRIPSLKFLSAGQINGFNDSVLKQWMESGTTRSLISLDL
DSSDNISDEGLLKFIQRQGHQLSACCLSGMPHITDQLWMSILPLLGNCKI
IVMGTAEKLGVNIHVDQLMDTIASNCGNLERLELRWDPDNLRFSDKSQKA
IDILRVKCLKLRCMVLSDGRYYETVKANFERADRITVVRTTTCCRVSPYH
LLRNYNDLIFN*

GH26184.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG2010-PC 511 CG2010-PC 1..511 1..511 2664 100 Plus
CG2010-PB 511 CG2010-PB 1..511 1..511 2664 100 Plus
CG2010-PA 515 CG2010-PA 6..515 2..511 2529 95.5 Plus