Clone GH26186 Report

Search the DGRC for GH26186

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:261
Well:86
Vector:pOT2
Associated Gene/TranscriptTimp-RB
Protein status:GH26186.pep: gold
Preliminary Size:1590
Sequenced Size:1590

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6281 2001-01-01 Release 2 assignment
CG6281 2001-11-08 Blastp of sequenced clone
CG6281 2003-01-01 Sim4 clustering to Release 3
Timp 2008-04-29 Release 5.5 accounting
Timp 2008-08-15 Release 5.9 accounting
Timp 2008-12-18 5.12 accounting

Clone Sequence Records

GH26186.complete Sequence

1590 bp (1590 high quality bases) assembled on 2001-11-08

GenBank Submission: AY069211

> GH26186.complete
CGCAGCGAGCTAGAACGCCACAAAATCGGCGACGGAAAAATCGCGACATC
GTACGAGATATATAGTACCAAGTAGTATAAAGTGCTGACGAGTCGAATCG
AGTGCGAGTGCGAGTGCGAGTGCCGGTGAAAATACATTCAATTGTTTTTC
CCGATTTTTGTGCCCTCGGGTTCAAGTGTTTAAAAGCCTGAAGTGCTAGT
TTTACACACAAAATAGGTTGCAGCTTAAAGTAATCTCGGGGACTCACTGG
CGGTGACGCAAAGCCATAGCCATTTTATCAGCTCGCCAACCAACGCAGTC
ATGGATCTTAGAAAGCATTTGGGTTTATTGACGCTCCTCCTGGTCGCCGT
TTTCGCGTTTTACGGTCGCCCAGCGGATGCCTGCAGCTGCATGCCATCTC
ACCCACAGACGCACTTCGCCCAGGCGGACTACGTTGTGCAACTGCGAGTC
CTTCGCAAATCGGATACCATCGAGCCCGGCAGGACCACCTACAAAGTTCA
CATCAAACGCACCTACAAGGCTACATCCGAAGCACGACGAATGCTACGCG
ATGGGCGCCTGTCCACGCCCCAAGATGACGCAATGTGTGGTATAAATCTC
GATCTGGGAAAAGTTTATATAGTAGCGGGTAGGATGCCGACATTAAATAT
ATGCAGCTACTACAAGGAGTACACCAGGATGACCATAACAGAGCGTCATG
GCTTCAGCGGTGGATATGCCAAGGCCACCAATTGCACAGTAACTCCCTGC
TTTGGAGAGAGATGCTTTAAGGGACGAAACTATGCCGATACATGCAAGTG
GTCGCCTTTTGGAAAATGCGAGACGAACTACAGTGCCTGCATGCCGCATA
AAGTGCAGACGGTCAATGGAGTGATTTCCCGATGCCGCTGGCGACGCACG
CAGCTCTACAGAAAGTGCATGAGCAATCCGTAAACCAATGCGGGTTTTTT
TTTTGCCCCAAGTCCTTCGCTTGTCCTTGTTATGCTACCGTTTTTCTCTA
TCCAGAGCTTTAATACGTACGTTATGCCTAATGTGTTATTTAATAATTGA
TGCTTTCGAACTTGTAACCGGCTCCTTAGTAGCTACTTAATTAGTGTCTA
GCTTTTAATGTTCATACCGCGTATACTTACCAAATCGCGTGGATTGGGGA
AGAAGGTCTGTTCGATCAGTGGAAAGCCGTCGCGTCCGAGGCGTCGCTGC
AATTGCAGCAGGTGCGAAAATACCCAGGGCTTGTCCTTAAGAGTATCAAA
GAAGATCAGTTGTAAAGTAAGCCCGATATGAAGTCCAACGCTACTCACCT
GGAACTGATAGATAGAGTGCAGCGAATTAATGCTGGGCACTCCGCCGTAC
TTTAAACCCAAGATCGTGGAACGATAGTCACTGGATCCGTCGCGCGGCGG
CTGACGAATGAGCACAAAGTCCGGGCGGAAGGAACGTGCCACCTGTTTTG
GTGTGATATTCCAAAAAGAAAATAAATTTTATGATAAAAAGAAAATTTAC
GTAGCTGTTAGATTGCCAATCTCTGGCAACACTTTTGTAATTTTTAAACA
CGAAAAATATATTTAAAAACAGAAAAAAAAAAAAAAAAAA

GH26186.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:01:07
Subject Length Description Subject Range Query Range Score Percent Strand
Timp-RB 1635 Timp-RB 64..1635 1..1572 7860 100 Plus
Timp.a 1367 Timp.a 20..1367 225..1572 6725 99.9 Plus
Timp-RA 1498 Timp-RA 64..1345 1..1282 6410 100 Plus
Timp-RA 1498 Timp-RA 1346..1498 1420..1572 765 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 6029616..6030450 1572..739 4095 99.6 Minus
chr3R 27901430 chr3R 6038491..6038720 230..1 1135 99.6 Minus
chr3R 27901430 chr3R 6030505..6030733 742..514 1115 99.1 Minus
chr3R 27901430 chr3R 6030992..6031200 433..225 1015 99 Minus
chr3R 27901430 chr3R 6030834..6030921 520..433 440 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:08:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10203873..10204708 1574..739 4180 100 Minus
3R 32079331 3R 10212759..10212988 230..1 1150 100 Minus
3R 32079331 3R 10204763..10204991 742..514 1130 99.6 Minus
3R 32079331 3R 10205250..10205458 433..225 1030 99.5 Minus
3R 32079331 3R 10205092..10205179 520..433 440 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9944704..9945539 1574..739 4180 100 Minus
3R 31820162 3R 9953590..9953819 230..1 1150 100 Minus
3R 31820162 3R 9945594..9945822 742..514 1130 99.5 Minus
3R 31820162 3R 9946081..9946289 433..225 1030 99.5 Minus
3R 31820162 3R 9945923..9946010 520..433 440 100 Minus
Blast to na_te.dros performed on 2019-03-16 08:08:54 has no hits.

GH26186.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:09:42 Download gff for GH26186.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 6029616..6030450 739..1572 99 <- Minus
chr3R 6030509..6030727 520..738 99 <- Minus
chr3R 6030835..6030920 434..519 100 <- Minus
chr3R 6030992..6031194 231..433 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:57:03 Download gff for GH26186.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 1..633 301..933 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:34:39 Download gff for GH26186.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 1..633 301..933 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:46:32 Download gff for GH26186.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 1..633 301..933 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:02:11 Download gff for GH26186.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 1..633 301..933 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:35:48 Download gff for GH26186.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 1..633 301..933 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:14:17 Download gff for GH26186.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 1..1572 1..1572 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:34:39 Download gff for GH26186.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 1..1572 1..1572 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:46:32 Download gff for GH26186.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 20..1591 1..1572 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:02:11 Download gff for GH26186.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 1..1572 1..1572 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:35:48 Download gff for GH26186.complete
Subject Subject Range Query Range Percent Splice Strand
Timp-RB 20..1591 1..1572 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:09:42 Download gff for GH26186.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10212759..10212988 1..230 100   Minus
3R 10205250..10205452 231..433 100 <- Minus
3R 10203875..10204708 739..1572 100 <- Minus
3R 10204767..10204985 520..738 100 <- Minus
3R 10205093..10205178 434..519 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:09:42 Download gff for GH26186.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10212759..10212988 1..230 100   Minus
3R 10205250..10205452 231..433 100 <- Minus
3R 10203875..10204708 739..1572 100 <- Minus
3R 10204767..10204985 520..738 100 <- Minus
3R 10205093..10205178 434..519 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:09:42 Download gff for GH26186.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10212759..10212988 1..230 100   Minus
3R 10205250..10205452 231..433 100 <- Minus
3R 10203875..10204708 739..1572 100 <- Minus
3R 10204767..10204985 520..738 100 <- Minus
3R 10205093..10205178 434..519 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:46:32 Download gff for GH26186.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6029597..6030430 739..1572 100 <- Minus
arm_3R 6030489..6030707 520..738 100 <- Minus
arm_3R 6030815..6030900 434..519 100 <- Minus
arm_3R 6030972..6031174 231..433 100 <- Minus
arm_3R 6038481..6038710 1..230 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:39:12 Download gff for GH26186.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9946081..9946283 231..433 100 <- Minus
3R 9953590..9953819 1..230 100   Minus
3R 9944706..9945539 739..1572 100 <- Minus
3R 9945598..9945816 520..738 100 <- Minus
3R 9945924..9946009 434..519 100 <- Minus

GH26186.pep Sequence

Translation from 300 to 932

> GH26186.pep
MDLRKHLGLLTLLLVAVFAFYGRPADACSCMPSHPQTHFAQADYVVQLRV
LRKSDTIEPGRTTYKVHIKRTYKATSEARRMLRDGRLSTPQDDAMCGINL
DLGKVYIVAGRMPTLNICSYYKEYTRMTITERHGFSGGYAKATNCTVTPC
FGERCFKGRNYADTCKWSPFGKCETNYSACMPHKVQTVNGVISRCRWRRT
QLYRKCMSNP*

GH26186.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:29:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17533-PA 210 GF17533-PA 1..210 1..210 945 80.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17294-PA 210 GG17294-PA 1..209 1..209 868 76.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:29:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18457-PA 210 GH18457-PA 1..210 1..210 864 72.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:06:05
Subject Length Description Subject Range Query Range Score Percent Strand
Timp-PB 210 CG6281-PB 1..210 1..210 1150 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24034-PA 210 GI24034-PA 1..210 1..210 668 61.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:29:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23838-PA 210 GL23838-PA 1..210 1..210 888 80 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19485-PA 210 GA19485-PA 1..210 1..210 892 80 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:29:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26178-PA 249 GM26178-PA 1..191 1..193 890 90.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:29:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20727-PA 210 GD20727-PA 1..210 1..210 1113 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23665-PA 210 GJ23665-PA 1..210 1..210 822 73.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22534-PA 210 GK22534-PA 1..210 1..210 776 69 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24695-PA 211 GE24695-PA 1..211 1..210 995 90.5 Plus

GH26186.hyp Sequence

Translation from 300 to 932

> GH26186.hyp
MDLRKHLGLLTLLLVAVFAFYGRPADACSCMPSHPQTHFAQADYVVQLRV
LRKSDTIEPGRTTYKVHIKRTYKATSEARRMLRDGRLSTPQDDAMCGINL
DLGKVYIVAGRMPTLNICSYYKEYTRMTITERHGFSGGYAKATNCTVTPC
FGERCFKGRNYADTCKWSPFGKCETNYSACMPHKVQTVNGVISRCRWRRT
QLYRKCMSNP*

GH26186.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:33:36
Subject Length Description Subject Range Query Range Score Percent Strand
Timp-PB 210 CG6281-PB 1..210 1..210 1150 100 Plus