Clone GH26248 Report

Search the DGRC for GH26248

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:262
Well:48
Vector:pOT2
Associated Gene/TranscriptSend1-RA
Protein status:GH26248.pep: gold
Preliminary Size:1010
Sequenced Size:895

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17012 2001-01-01 Release 2 assignment
CG17012 2001-10-10 Blastp of sequenced clone
CG17012 2003-01-01 Sim4 clustering to Release 3
CG17012 2008-04-29 Release 5.5 accounting
CG17012 2008-08-15 Release 5.9 accounting
CG17012 2008-12-18 5.12 accounting

Clone Sequence Records

GH26248.complete Sequence

895 bp (895 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060796

> GH26248.complete
CGAGCTCACAATGTTTTCCAAGTGCTTTCATTTGCTTTTGGCAGTACATT
TGCTGATTTCTCCGGTGGTACCTGTCCTTTTGGAGCCATCTGAACGCATC
ATCGGCGGAAGCAGCATGGACATCACTGATGTTCCGTGGCAGGTGTCCTT
ACAGTACTACGGCGAACATTTTTGCGGCGGATCCATCTACAGTAAAACCA
TAATTATAACAGCTGCCCACTGTATTAAAGAAGGTGAACGCTCAATTCGA
GCAGGATCCTCGCTGCATGATAGCGGAGGAGTTGTGGTGGGAGTGGAAGC
ATATATCATTCACCCACAATTTGATAAACATAACATGGAGAACGACGTGG
CTGTCCTCAAACTGAGCAGTCCTTTAAGTTTTTCCGATTCCATACAAACA
ATTCCCTTGGCCGAGACGGATCCTCCCACGTCGTCTTCGGCGCTAGCCAC
TGGCTGGGGACGTGGAAATTTTTTAATTCGACCACGACAACTTCAGGGAG
TTGAAATCCTTATTCGGCCGCTGATCGTGTGTAAATTGAAATATGGCAAC
GGTGTGTTCAATGAGGACATCTGCGCGGGAAGAATGGGAAAAGGCGGCTG
TTATGGAGATTCCGGTGGACCCTTGGTCTTCAACGGCCAGCTAGTGGGGA
TCACATCGAGAACGGGAAACATTGTTTGCTTGGGATCTTCTCTGTACGCT
AGTGTGGCGCGTTATCGTAACTGGATCCTTAGTGCCATCGATGTATTGCA
TTTTCAAGCACCCGCTACAAATGTGTAATTTACGACATTCCAACTTAACG
TTCGCAGCAACAATTACTGTTGTTCATAAATCAAGTTTTATAAAATAAAT
ACATTGAATAATTTTACAAAACTACAAAAAAAAAAAAAAAAAAAA

GH26248.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG17012-RA 876 CG17012-RA 1..876 1..876 4380 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2253909..2254783 875..1 4285 99.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:08:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2254175..2255050 876..1 4380 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2254175..2255050 876..1 4380 100 Minus
Blast to na_te.dros performed 2019-03-15 17:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
NOF 4347 NOF FB 4347bp Derived from X51937 (g8297) (Rel. 44, Last updated, Version 6). 3956..3992 837..873 113 78.4 Plus
roo 9092 roo DM_ROO 9092bp 8568..8613 826..870 110 73.9 Plus

GH26248.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:13:39 Download gff for GH26248.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2253909..2254783 1..875 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:57:08 Download gff for GH26248.complete
Subject Subject Range Query Range Percent Splice Strand
CG17012-RA 1..768 11..778 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:56:44 Download gff for GH26248.complete
Subject Subject Range Query Range Percent Splice Strand
CG17012-RA 1..768 11..778 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:28:36 Download gff for GH26248.complete
Subject Subject Range Query Range Percent Splice Strand
Send1-RA 1..768 11..778 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:05 Download gff for GH26248.complete
Subject Subject Range Query Range Percent Splice Strand
CG17012-RA 1..768 11..778 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:28:32 Download gff for GH26248.complete
Subject Subject Range Query Range Percent Splice Strand
Send1-RA 1..768 11..778 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:12:20 Download gff for GH26248.complete
Subject Subject Range Query Range Percent Splice Strand
CG17012-RA 1..875 1..875 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:56:44 Download gff for GH26248.complete
Subject Subject Range Query Range Percent Splice Strand
CG17012-RA 1..875 1..875 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:28:36 Download gff for GH26248.complete
Subject Subject Range Query Range Percent Splice Strand
Send1-RA 1..875 1..875 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:05 Download gff for GH26248.complete
Subject Subject Range Query Range Percent Splice Strand
CG17012-RA 1..875 1..875 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:28:32 Download gff for GH26248.complete
Subject Subject Range Query Range Percent Splice Strand
Send1-RA 1..875 1..875 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:39 Download gff for GH26248.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2254176..2255050 1..875 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:39 Download gff for GH26248.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2254176..2255050 1..875 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:13:39 Download gff for GH26248.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2254176..2255050 1..875 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:28:36 Download gff for GH26248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2254176..2255050 1..875 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:22:33 Download gff for GH26248.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2254176..2255050 1..875 100   Minus

GH26248.hyp Sequence

Translation from 0 to 777

> GH26248.hyp
ELTMFSKCFHLLLAVHLLISPVVPVLLEPSERIIGGSSMDITDVPWQVSL
QYYGEHFCGGSIYSKTIIITAAHCIKEGERSIRAGSSLHDSGGVVVGVEA
YIIHPQFDKHNMENDVAVLKLSSPLSFSDSIQTIPLAETDPPTSSSALAT
GWGRGNFLIRPRQLQGVEILIRPLIVCKLKYGNGVFNEDICAGRMGKGGC
YGDSGGPLVFNGQLVGITSRTGNIVCLGSSLYASVARYRNWILSAIDVLH
FQAPATNV*

GH26248.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:33:58
Subject Length Description Subject Range Query Range Score Percent Strand
Send1-PA 255 CG17012-PA 1..255 4..258 1332 100 Plus
Send2-PA 239 CG18125-PA 1..230 4..247 523 47.1 Plus
CG17234-PA 251 CG17234-PA 1..247 4..246 509 45.5 Plus
alphaTry-PA 256 CG18444-PA 7..251 11..244 440 44.7 Plus
betaTry-PB 253 CG18211-PB 7..251 11..244 430 43.1 Plus

GH26248.pep Sequence

Translation from 10 to 777

> GH26248.pep
MFSKCFHLLLAVHLLISPVVPVLLEPSERIIGGSSMDITDVPWQVSLQYY
GEHFCGGSIYSKTIIITAAHCIKEGERSIRAGSSLHDSGGVVVGVEAYII
HPQFDKHNMENDVAVLKLSSPLSFSDSIQTIPLAETDPPTSSSALATGWG
RGNFLIRPRQLQGVEILIRPLIVCKLKYGNGVFNEDICAGRMGKGGCYGD
SGGPLVFNGQLVGITSRTGNIVCLGSSLYASVARYRNWILSAIDVLHFQA
PATNV*

GH26248.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:54:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15290-PA 247 GF15290-PA 21..244 27..243 545 50 Plus
Dana\GF19704-PA 251 GF19704-PA 22..248 28..243 477 46.3 Plus
Dana\GF15291-PA 246 GF15291-PA 23..244 28..244 424 43.9 Plus
Dana\GF13692-PA 261 GF13692-PA 20..257 19..242 395 40.7 Plus
Dana\GF12546-PA 256 GF12546-PA 7..256 8..246 384 37.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24537-PA 254 GG24537-PA 22..250 25..243 408 41.5 Plus
Dere\GG10155-PA 242 GG10155-PA 23..238 26..243 407 42.2 Plus
Dere\GG20381-PA 259 GG20381-PA 1..255 1..242 392 38 Plus
Dere\thetaTry-PA 262 GG22662-PA 29..262 24..246 390 38.6 Plus
Dere\GG24538-PA 227 GG24538-PA 1..225 1..244 383 39 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:54:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13790-PA 261 GH13790-PA 1..256 1..247 425 44.7 Plus
Dgri\GH22926-PA 256 GH22926-PA 1..250 1..240 413 41.3 Plus
Dgri\GH22925-PA 254 GH22925-PA 3..251 4..241 410 40.8 Plus
Dgri\GH11999-PA 234 GH11999-PA 7..229 29..247 408 46.9 Plus
Dgri\GH22924-PA 256 GH22924-PA 1..251 1..241 403 40.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:05:51
Subject Length Description Subject Range Query Range Score Percent Strand
Send1-PA 255 CG17012-PA 1..255 1..255 1332 100 Plus
Send2-PA 239 CG18125-PA 1..230 1..244 523 47.1 Plus
CG17234-PA 251 CG17234-PA 1..247 1..243 509 45.5 Plus
alphaTry-PA 256 CG18444-PA 7..251 8..241 440 44.7 Plus
betaTry-PB 253 CG18211-PB 7..251 8..241 430 43.1 Plus
betaTry-PA 253 CG18211-PA 7..251 8..241 430 43.1 Plus
gammaTry-PA 253 CG30028-PA 7..251 8..241 426 41.9 Plus
deltaTry-PA 253 CG12351-PA 7..251 8..241 426 41.9 Plus
CG30031-PA 253 CG30031-PA 7..251 8..241 426 41.9 Plus
CG30025-PA 253 CG30025-PA 7..251 8..241 423 41.5 Plus
iotaTry-PA 252 CG7754-PA 1..252 10..246 406 40.6 Plus
CG17239-PB 248 CG17239-PB 1..242 1..244 400 38.2 Plus
CG17239-PA 248 CG17239-PA 1..242 1..244 400 38.2 Plus
Ser8-PA 260 CG4812-PA 3..256 8..242 384 38.1 Plus
epsilonTry-PA 256 CG18681-PA 30..249 29..239 374 40.4 Plus
CG17571-PB 258 CG17571-PB 4..258 8..246 373 37.6 Plus
CG17571-PA 258 CG17571-PA 4..258 8..246 373 37.6 Plus
thetaTry-PA 262 CG12385-PA 30..262 25..246 366 37.4 Plus
Ser12-PA 245 CG17240-PA 22..245 28..246 348 38.8 Plus
CG31681-PA 264 CG31681-PA 2..249 5..239 337 37.8 Plus
CG9676-PA 251 CG9676-PA 23..245 23..239 335 37.8 Plus
CG11192-PB 279 CG11192-PB 27..264 29..244 331 35 Plus
CG1304-PA 260 CG1304-PA 8..259 8..245 328 37.3 Plus
Ser6-PA 259 CG2071-PA 8..259 9..245 327 37.1 Plus
CG32523-PA 262 CG32523-PA 33..256 24..239 305 35.2 Plus
CG8299-PA 260 CG8299-PA 3..252 8..239 303 35.2 Plus
CG13430-PB 267 CG13430-PB 1..266 1..246 303 36.7 Plus
CG13430-PA 267 CG13430-PA 1..266 1..246 303 36.7 Plus
CG31269-PB 273 CG31269-PB 36..255 28..239 300 35 Plus
CG32374-PA 299 CG32374-PA 73..292 29..239 300 33 Plus
sphe-PA 249 CG9675-PA 25..248 29..243 298 31.6 Plus
CG16998-PA 258 CG16998-PA 2..247 7..244 298 31 Plus
lambdaTry-PA 272 CG12350-PA 35..260 29..243 296 35.5 Plus
CG31954-PA 277 CG31954-PA 50..271 29..239 296 36.8 Plus
CG34458-PA 257 CG34458-PA 13..251 8..239 294 33.1 Plus
CG32834-PB 556 CG32834-PB 21..252 24..239 294 34.5 Plus
zetaTry-PA 280 CG12387-PA 35..273 26..239 283 33.9 Plus
CG17242-PA 245 CG17242-PA 21..241 35..248 280 33.9 Plus
CG17242-PB 245 CG17242-PB 21..241 35..248 280 33.9 Plus
CG9897-PA 247 CG9897-PA 1..241 8..239 277 32 Plus
CG43335-PA 281 CG43335-PA 24..272 15..239 276 32.8 Plus
Try29F-PD 267 CG9564-PD 41..263 29..241 274 33 Plus
Try29F-PC 267 CG9564-PC 41..263 29..241 274 33 Plus
CG32271-PA 248 CG32271-PA 20..246 25..243 265 33.3 Plus
CG11836-PI 281 CG11836-PI 44..275 29..244 262 32.1 Plus
CG11836-PJ 333 CG11836-PJ 96..327 29..244 262 32.1 Plus
CG7829-PA 253 CG7829-PA 24..221 26..216 261 32.3 Plus
CG5255-PA 273 CG5255-PA 4..249 8..239 258 30.3 Plus
CG31267-PA 275 CG31267-PA 42..270 27..244 257 32.9 Plus
CG3650-PA 249 CG3650-PA 25..247 29..243 255 33.6 Plus
CG31265-PA 266 CG31265-PA 2..258 4..243 255 31.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:54:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21245-PA 261 GI21245-PA 23..261 19..246 413 41 Plus
Dmoj\GI20607-PA 261 GI20607-PA 34..261 28..246 395 39.4 Plus
Dmoj\GI18352-PA 287 GI18352-PA 36..281 6..241 382 38.3 Plus
Dmoj\GI17437-PA 238 GI17437-PA 7..233 26..241 380 41 Plus
Dmoj\GI17438-PA 258 GI17438-PA 27..253 26..241 380 41 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19408-PA 245 GL19408-PA 1..244 8..246 424 41.8 Plus
Dper\GL26041-PA 259 GL26041-PA 7..252 5..239 394 38.2 Plus
Dper\GL17339-PA 256 GL17339-PA 7..254 8..244 390 41.8 Plus
Dper\GL17338-PA 256 GL17338-PA 7..254 8..244 384 39.4 Plus
Dper\GL17142-PA 256 GL17142-PA 7..254 8..244 375 41 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:54:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14406-PA 245 GA14406-PA 1..244 1..246 426 41.8 Plus
Dpse\GA23343-PA 259 GA23343-PA 7..252 5..239 395 38.2 Plus
Dpse\GA14937-PA 256 GA14937-PA 7..254 8..244 390 41.8 Plus
Dpse\GA24979-PA 256 GA24979-PA 7..254 8..244 377 41 Plus
Dpse\GA15051-PA 256 GA15051-PA 7..254 8..244 376 39 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:54:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18244-PA 255 GM18244-PA 1..255 1..255 1072 79.2 Plus
Dsec\GM14874-PA 245 GM14874-PA 20..243 23..251 459 46.1 Plus
Dsec\GM18245-PA 250 GM18245-PA 20..249 23..246 449 41.7 Plus
Dsec\GM18326-PA 251 GM18326-PA 39..247 42..243 430 44.9 Plus
Dsec\GM18246-PA 248 GM18246-PA 1..245 1..247 428 38.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:54:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22850-PA 255 GD22850-PA 1..255 1..255 1070 78.8 Plus
Dsim\GD22013-PA 245 GD22013-PA 20..243 23..251 459 46.1 Plus
Dsim\GD22851-PA 250 GD22851-PA 20..247 23..244 458 42.5 Plus
Dsim\GD23142-PA 251 GD23142-PA 25..247 28..243 456 44.8 Plus
Dsim\GD22852-PA 248 GD22852-PA 1..242 1..244 410 38.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22325-PA 340 GJ22325-PA 1..254 1..249 526 44.5 Plus
Dvir\GJ20850-PA 261 GJ20850-PA 10..254 5..239 410 41.1 Plus
Dvir\GJ21575-PA 256 GJ21575-PA 10..253 8..244 406 40.4 Plus
Dvir\GJ21573-PA 271 GJ21573-PA 10..261 14..247 402 39.7 Plus
Dvir\GJ21498-PA 256 GJ21498-PA 7..250 8..240 396 41 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:54:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19007-PA 261 GK19007-PA 6..257 3..242 436 42.9 Plus
Dwil\GK19331-PA 263 GK19331-PA 24..263 17..247 407 41.3 Plus
Dwil\GK21995-PA 256 GK21995-PA 1..254 1..244 383 40 Plus
Dwil\GK21994-PA 256 GK21994-PA 30..256 29..246 382 40 Plus
Dwil\GK24137-PA 259 GK24137-PA 21..258 21..247 379 39.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:54:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18073-PA 248 GE18073-PA 22..244 25..243 487 46.9 Plus
Dyak\GE15163-PA 259 GE15163-PA 20..253 23..244 468 44.4 Plus
Dyak\GE15153-PA 260 GE15153-PA 1..253 1..243 463 41.8 Plus
Dyak\GE25071-PA 249 GE25071-PA 22..246 25..243 434 44 Plus
Dyak\GE15166-PA 244 GE15166-PA 1..240 1..242 416 40.1 Plus