Clone GH26270 Report

Search the DGRC for GH26270

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:262
Well:70
Vector:pOT2
Associated Gene/TranscriptCG6439-RA
Protein status:GH26270.pep: gold
Preliminary Size:1650
Sequenced Size:1615

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6439 2001-01-01 Release 2 assignment
CG6439 2003-01-01 Sim4 clustering to Release 3
CG6439 2003-02-22 Blastp of sequenced clone
CG6439 2008-04-29 Release 5.5 accounting
CG6439 2008-08-15 Release 5.9 accounting
CG6439 2008-12-18 5.12 accounting

Clone Sequence Records

GH26270.complete Sequence

1615 bp (1615 high quality bases) assembled on 2003-02-22

GenBank Submission: BT004877

> GH26270.complete
AAACAGGTTACTATGCGGTTGCCGCCAAATTTATTCCTTAAATAATCGTA
TATGTTCGTTACTAATTTTCGAACGCCAAAATCGCGATAGTTGGTCGTTA
GCCAGCACTGGACGCGCCAGTTTCGTGGGCGGCTATCGCCAGCCCTGGTA
GTCAGAGGCAATCAGCTGGTTTGCGTGGTCGATTTGGTCCTATTGAAATT
TTTCGGTTTGGCACCGGAGCAAAAATCACATCGCAATCAAAAATTTCGCG
TGGCCAAAGGACACACTTTTGAGTTTGGATCAACAGCCGGGAAGATCTAG
CTAACCGAATAGCAAAATGTCGATGCTGGCGAGAACAGTTGGACGGACGT
TCATGCAGGCTGCGGCAGCACGTAGTCTGCACACCACGTCGACGCTACGG
GCTACGGATAACTACGGCGCCAACAGGACCACCTGCACACTGATTCCCGG
CGACGGTGTGGGTCCCGAGCTGGTCTACTCCCTCCAGGAGGTCTTCAAGG
CAGCCAGCGTTCCCGTGGACTTCGAGTGCTACTTCCTTTCCGAAATCAAT
CCCGTGCTTAGTGCCAAACTGGAGGATGTGGTGGCATCCATTCAGAAAAA
CAAAGTGTGCATTAAGGGCGTTTTGGCCACACCCGACTACAGCAATGTGG
GTGACCTGCAGACCCTTAACATGAAGCTTCGCAACGACCTGGACCTCTAC
GCCAATGTGGTGCATGTGCGCAGCTTGCCCGGTGTCAAGACCCGCCACAC
CAACATCGACACGGTGATTATTCGCGAGCAGACGGAGGGCGAGTATTCGG
CGTTGGAGCACGAGTCGGTGCCCGGCATTGTGGAGTGCCTGAAGATTATC
ACCGCCAAAAAGTCCATGCGCATTGCCAAGTTCGCCTTCGACTATGCGAC
GAAGAATCAGCGCAAGAAGGTCACCGCCGTGCACAAGGCGAATATCATGA
AGTTGGGCGACGGTCTCTTCCTACGCTCCTGCGAAGAGGTTTCCCGGCTC
TATCCGCGCATCCAGTTTGAGAAGATGATCGTGGACAACACGACCATGCA
GATGGTTTCCAATCCCAACCAGTTCGACGTGATGGTCACCCCCAATCTCT
ATGGTGCCATTGTGGACAATCTGGCCAGTGGTCTCGTGGGCGGTGCTGGT
GTCGTTGCTGGTGCCTCCTACTCCTCGGAATCCGTCGTCTTTGAGCCGGG
TGCACGTCACACCTTCGCCGAGGCCGTGGGCAAGAACGTGGCTAATCCCA
CTGCCATGCTGCTCTGCGGCGTGAAGCTGTTGCGCCACATCAACCTGCCC
ACCTACGGCGAGATCATCCAGAATGCCATCAACAAGGTGCTGAACGATGG
CAAGGTGCGTACTAAGGATCTGGGCGGACAATCGACCACGCAGGACTTTA
CCCGCGCCATCATCCTGAACATGTCCTAGATGGGCACCACTGTCATCGCC
GGCATCGCGATCAGCAAGTCTACAACATCATGGGCAACAACGTTGGCGCT
TATATAATCGACATTAGACAGTTTCTGTTGTTGCCACAGCTAAATTTTGA
ATTGTTGAAAGAAACACCTTGAAAGTTCTTAGTTATCCTATTAAAACAAA
AAAAAAAAAAAAAAA

GH26270.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG6439-RB 2118 CG6439-RB 45..1637 1..1593 7965 100 Plus
CG6439-RA 2118 CG6439-RA 45..1637 1..1593 7965 100 Plus
CG6439.a 2088 CG6439.a 34..1626 1..1593 7965 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 17841106..17841707 1199..598 2905 98.8 Minus
chr3R 27901430 chr3R 17840590..17840985 1593..1198 1950 99.5 Minus
chr3R 27901430 chr3R 17842756..17843114 359..1 1735 98.9 Minus
chr3R 27901430 chr3R 17841745..17841864 617..498 525 95.8 Minus
chr3R 27901430 chr3R 17842387..17842473 504..418 420 98.9 Minus
chr3R 27901430 chr3R 17842544..17842594 407..357 255 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:08:48 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22017340..22017941 1199..598 2935 99.2 Minus
3R 32079331 3R 22016824..22017219 1593..1198 1980 100 Minus
3R 32079331 3R 22018991..22019349 359..1 1795 100 Minus
3R 32079331 3R 22017979..22018098 617..498 600 100 Minus
3R 32079331 3R 22018619..22018717 504..406 480 99 Minus
3R 32079331 3R 22018779..22018829 407..357 255 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 21758171..21758772 1199..598 2935 99.1 Minus
3R 31820162 3R 21757655..21758050 1593..1198 1980 100 Minus
3R 31820162 3R 21759822..21760180 359..1 1795 100 Minus
3R 31820162 3R 21758810..21758929 617..498 600 100 Minus
3R 31820162 3R 21759450..21759548 504..406 480 98.9 Minus
3R 31820162 3R 21759610..21759660 407..357 255 100 Minus
Blast to na_te.dros performed on 2019-03-16 23:29:32 has no hits.

GH26270.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:30:16 Download gff for GH26270.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 17840586..17840984 1199..1597 98 <- Minus
chr3R 17841107..17841688 617..1198 99 <- Minus
chr3R 17841746..17841862 500..616 95 <- Minus
chr3R 17842392..17842481 407..499 96 <- Minus
chr3R 17842545..17842592 359..406 100 <- Minus
chr3R 17842757..17843114 1..358 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:57:11 Download gff for GH26270.complete
Subject Subject Range Query Range Percent Splice Strand
CG6439-RA 1..1113 317..1429 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:49:06 Download gff for GH26270.complete
Subject Subject Range Query Range Percent Splice Strand
CG6439-RB 1..1113 317..1429 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:44:17 Download gff for GH26270.complete
Subject Subject Range Query Range Percent Splice Strand
CG6439-RA 1..1113 317..1429 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:40:28 Download gff for GH26270.complete
Subject Subject Range Query Range Percent Splice Strand
CG6439-RA 1..1113 317..1429 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:51:26 Download gff for GH26270.complete
Subject Subject Range Query Range Percent Splice Strand
CG6439-RA 1..1113 317..1429 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:01:40 Download gff for GH26270.complete
Subject Subject Range Query Range Percent Splice Strand
CG6439-RA 34..1627 1..1597 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:49:06 Download gff for GH26270.complete
Subject Subject Range Query Range Percent Splice Strand
CG6439-RA 34..1627 1..1597 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:17 Download gff for GH26270.complete
Subject Subject Range Query Range Percent Splice Strand
CG6439-RB 34..1625 1..1592 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:40:29 Download gff for GH26270.complete
Subject Subject Range Query Range Percent Splice Strand
CG6439-RA 34..1627 1..1597 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:51:26 Download gff for GH26270.complete
Subject Subject Range Query Range Percent Splice Strand
CG6439-RB 34..1625 1..1592 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:30:16 Download gff for GH26270.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22016820..22017218 1199..1597 99 <- Minus
3R 22017341..22017922 617..1198 100 <- Minus
3R 22017980..22018096 500..616 100 <- Minus
3R 22018624..22018716 407..499 100 <- Minus
3R 22018780..22018827 359..406 100 <- Minus
3R 22018992..22019349 1..358 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:30:16 Download gff for GH26270.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22016820..22017218 1199..1597 99 <- Minus
3R 22017341..22017922 617..1198 100 <- Minus
3R 22017980..22018096 500..616 100 <- Minus
3R 22018624..22018716 407..499 100 <- Minus
3R 22018780..22018827 359..406 100 <- Minus
3R 22018992..22019349 1..358 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:30:16 Download gff for GH26270.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22016820..22017218 1199..1597 99 <- Minus
3R 22017341..22017922 617..1198 100 <- Minus
3R 22017980..22018096 500..616 100 <- Minus
3R 22018624..22018716 407..499 100 <- Minus
3R 22018780..22018827 359..406 100 <- Minus
3R 22018992..22019349 1..358 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:17 Download gff for GH26270.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17842542..17842940 1199..1597 99 <- Minus
arm_3R 17843063..17843644 617..1198 100 <- Minus
arm_3R 17843702..17843818 500..616 100 <- Minus
arm_3R 17844346..17844438 407..499 100 <- Minus
arm_3R 17844502..17844549 359..406 100 <- Minus
arm_3R 17844714..17845071 1..358 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:10:52 Download gff for GH26270.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21757651..21758049 1199..1597 99 <- Minus
3R 21758172..21758753 617..1198 100 <- Minus
3R 21758811..21758927 500..616 100 <- Minus
3R 21759455..21759547 407..499 100 <- Minus
3R 21759611..21759658 359..406 100 <- Minus
3R 21759823..21760180 1..358 100   Minus

GH26270.pep Sequence

Translation from 316 to 1428

> GH26270.pep
MSMLARTVGRTFMQAAAARSLHTTSTLRATDNYGANRTTCTLIPGDGVGP
ELVYSLQEVFKAASVPVDFECYFLSEINPVLSAKLEDVVASIQKNKVCIK
GVLATPDYSNVGDLQTLNMKLRNDLDLYANVVHVRSLPGVKTRHTNIDTV
IIREQTEGEYSALEHESVPGIVECLKIITAKKSMRIAKFAFDYATKNQRK
KVTAVHKANIMKLGDGLFLRSCEEVSRLYPRIQFEKMIVDNTTMQMVSNP
NQFDVMVTPNLYGAIVDNLASGLVGGAGVVAGASYSSESVVFEPGARHTF
AEAVGKNVANPTAMLLCGVKLLRHINLPTYGEIIQNAINKVLNDGKVRTK
DLGGQSTTQDFTRAIILNMS*

GH26270.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:32:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16953-PA 371 GF16953-PA 1..371 1..370 1798 93.3 Plus
Dana\GF16768-PA 402 GF16768-PA 35..383 22..366 813 44.5 Plus
Dana\GF20487-PA 377 GF20487-PA 35..373 25..365 739 42.9 Plus
Dana\GF22695-PA 255 GF22695-PA 1..236 131..366 656 48.3 Plus
Dana\GF13612-PA 412 GF13612-PA 89..403 41..365 556 35.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:32:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12546-PA 370 GG12546-PA 1..370 1..370 1976 100 Plus
Dere\GG11421-PA 402 GG11421-PA 35..383 22..366 814 44.5 Plus
Dere\GG18052-PA 377 GG18052-PA 32..373 22..365 742 42.6 Plus
Dere\GG22965-PA 395 GG22965-PA 66..387 34..365 549 34.6 Plus
Dere\GG22281-PA 378 GG22281-PA 123..361 119..359 273 26 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19869-PA 370 GH19869-PA 1..369 1..369 1731 88.9 Plus
Dgri\GH18988-PA 402 GH18988-PA 34..383 21..366 793 43.5 Plus
Dgri\GH17867-PA 354 GH17867-PA 2..350 17..365 739 42.3 Plus
Dgri\GH16376-PA 361 GH16376-PA 14..349 33..370 736 43.7 Plus
Dgri\GH20895-PA 386 GH20895-PA 64..384 41..369 566 38.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:41
Subject Length Description Subject Range Query Range Score Percent Strand
Idh3b-PB 370 CG6439-PB 1..370 1..370 1874 100 Plus
Idh3b-PA 370 CG6439-PA 1..370 1..370 1874 100 Plus
CG5028-PC 392 CG5028-PC 35..387 22..370 791 43.7 Plus
CG5028-PD 393 CG5028-PD 35..387 22..370 791 43.7 Plus
CG5028-PB 402 CG5028-PB 35..387 22..370 791 43.7 Plus
CG5028-PA 402 CG5028-PA 35..387 22..370 791 43.7 Plus
l(1)G0156-PC 354 CG12233-PC 12..350 25..365 726 42.9 Plus
l(1)G0156-PA 354 CG12233-PA 12..350 25..365 726 42.9 Plus
l(1)G0156-PD 377 CG12233-PD 35..373 25..365 726 42.9 Plus
CG32026-PA 719 CG32026-PA 386..718 41..369 631 38.7 Plus
CG3483-PA 391 CG3483-PA 57..387 18..365 506 33.9 Plus
CG7755-PA 378 CG7755-PA 10..359 2..357 288 23.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:32:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22037-PA 370 GI22037-PA 1..369 1..369 1697 86.2 Plus
Dmoj\GI22415-PA 402 GI22415-PA 35..383 22..366 793 43.4 Plus
Dmoj\GI16435-PA 377 GI16435-PA 25..373 15..365 748 42.6 Plus
Dmoj\GI11568-PA 354 GI11568-PA 1..354 3..369 735 40.6 Plus
Dmoj\GI18905-PA 399 GI18905-PA 79..390 41..365 581 38.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23725-PA 378 GL23725-PA 1..377 1..369 1741 88.9 Plus
Dper\GL21529-PA 402 GL21529-PA 35..383 22..366 804 44.2 Plus
Dper\GL14780-PA 351 GL14780-PA 23..347 15..365 627 38.7 Plus
Dper\GL20101-PA 411 GL20101-PA 85..404 36..365 565 36.3 Plus
Dper\GL11354-PA 395 GL11354-PA 134..373 118..359 306 28 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19594-PA 378 GA19594-PA 1..377 1..369 1741 88.9 Plus
Dpse\GA18606-PA 402 GA18606-PA 35..383 22..366 804 44.2 Plus
Dpse\GA11495-PA 373 GA11495-PA 23..369 15..365 740 42.3 Plus
Dpse\GA16620-PA 332 GA16620-PA 1..331 43..369 668 39.2 Plus
Dpse\GA17474-PA 411 GA17474-PA 85..404 36..365 566 36.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23677-PA 370 GM23677-PA 1..370 1..370 1973 99.7 Plus
Dsec\GM10262-PA 321 GM10262-PA 4..311 56..366 753 44.3 Plus
Dsec\GM22739-PA 377 GM22739-PA 32..373 22..365 743 42.6 Plus
Dsec\GM11859-PA 389 GM11859-PA 52..385 15..365 523 34 Plus
Dsec\GM20069-PA 378 GM20069-PA 123..361 119..359 265 26.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:32:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18486-PA 370 GD18486-PA 1..370 1..370 1973 99.7 Plus
Dsim\GD21232-PA 392 GD21232-PA 36..382 14..366 815 43.9 Plus
Dsim\GD15579-PA 377 GD15579-PA 32..373 22..365 743 42.6 Plus
Dsim\GD14133-PA 722 GD14133-PA 389..721 41..369 641 39 Plus
Dsim\GD11857-PA 388 GD11857-PA 52..384 15..365 483 32.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24090-PA 371 GJ24090-PA 1..370 1..369 1697 87.3 Plus
Dvir\GJ10975-PA 402 GJ10975-PA 35..383 22..366 800 44.2 Plus
Dvir\GJ11248-PA 367 GJ11248-PA 2..354 8..369 772 44.3 Plus
Dvir\GJ20729-PA 426 GJ20729-PA 80..417 18..365 600 38.9 Plus
Dvir\GJ15838-PA 258 GJ15838-PA 29..227 15..214 414 43.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:32:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13007-PA 370 GK13007-PA 1..369 1..369 1763 91.1 Plus
Dwil\GK12856-PA 402 GK12856-PA 35..383 22..366 803 44.2 Plus
Dwil\GK25509-PA 379 GK25509-PA 27..375 15..365 728 41.5 Plus
Dwil\GK19462-PA 390 GK19462-PA 1..307 52..361 523 36.9 Plus
Dwil\GK19318-PA 388 GK19318-PA 130..376 119..368 311 28.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:32:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24066-PA 370 GE24066-PA 1..370 1..370 1968 99.5 Plus
Dyak\GE23616-PA 402 GE23616-PA 35..383 22..366 809 43.9 Plus
Dyak\GE14404-PA 393 GE14404-PA 64..385 34..365 547 35.9 Plus
Dyak\GE17383-PA 268 GE17383-PA 112..264 212..365 329 40.3 Plus
Dyak\GE14076-PA 378 GE14076-PA 116..361 112..359 292 27.3 Plus

GH26270.hyp Sequence

Translation from 316 to 1428

> GH26270.hyp
MSMLARTVGRTFMQAAAARSLHTTSTLRATDNYGANRTTCTLIPGDGVGP
ELVYSLQEVFKAASVPVDFECYFLSEINPVLSAKLEDVVASIQKNKVCIK
GVLATPDYSNVGDLQTLNMKLRNDLDLYANVVHVRSLPGVKTRHTNIDTV
IIREQTEGEYSALEHESVPGIVECLKIITAKKSMRIAKFAFDYATKNQRK
KVTAVHKANIMKLGDGLFLRSCEEVSRLYPRIQFEKMIVDNTTMQMVSNP
NQFDVMVTPNLYGAIVDNLASGLVGGAGVVAGASYSSESVVFEPGARHTF
AEAVGKNVANPTAMLLCGVKLLRHINLPTYGEIIQNAINKVLNDGKVRTK
DLGGQSTTQDFTRAIILNMS*

GH26270.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:34:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG6439-PB 370 CG6439-PB 1..370 1..370 1874 100 Plus
CG6439-PA 370 CG6439-PA 1..370 1..370 1874 100 Plus
CG5028-PC 392 CG5028-PC 35..387 22..370 791 43.7 Plus
CG5028-PD 393 CG5028-PD 35..387 22..370 791 43.7 Plus
CG5028-PB 402 CG5028-PB 35..387 22..370 791 43.7 Plus