Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH26280.complete Sequence
1324 bp (1324 high quality bases) assembled on 2002-05-15
GenBank Submission: AY119548
> GH26280.complete
AAATTTAGGAACATATCGAAAACGTGTAGGGAATCGAGAGCCATCTATAA
ATTCCTGGTGTTGATAGAAGATCACCGATCGAAGCCACCATGGACAAGGC
ACCGGGTCAGGACTCAAATCACAGAAAATCTCTGAATCTGCTGGACAAAG
CGCTGCCCATATCGGTGGTCACCGCACCACAGTTGCGATCTCGCCGCCAA
TTCAGTTTCAATGGCCTGCGGTACGAGATGAATGGGCTGCTACCATTGCC
GCCACCGCCGGCCACGCCGCAGGTGCAGCTCTCGAGGCTCAGTGCAGGTG
GCGGAGGTGGTGGCTCCCAGGTGAAGAAGCAGGCTAGTGGCTCCAGCCAT
TCGCTGAATGCCAAAACTATTGCTGAGACAGCCGGCGGAGATGGTGGTGC
ATCACGGCCGGATCGAAAGGGAGTCTTGCCCAAGCATGTGACATTGGGTG
ACCGAGCCTTGCTGATGAACGGAGGGGTGCGCATGCCCAGGAGCAGCGAG
CTGGACTTCCCGAAAACAAAACCCACAGCGAAAAGGTCATCCTCTCAATT
TTCCATCAAAGCAGAAAAGCAGGACAAGAAGGTGGAGCGTAAGGATGCTT
CGGGACTTATCCAGGATAGAGAAGCCCTCAGACGAGAGAAGAAGCATCGA
CGCAGGCCGCATTCAATGGAATTGCAGGAGAGGATGTCCTCACCGGATCA
GTGTGACCTGACCGCTCAGCAGAGCTGGATGTTGGCCCAGACGCTGCTTA
AGGCCTACGGAAGCGGACTGGTCCAAACTTCCACCGGTGACGGAGCTTCC
TCCAAAATGGACTACATTACTCTGGCCGGATTGGTACTCGGCTGCGTGGT
CTCCCACGCCCTCTTCTTCCTGTGCTGGTACTTCAGTTGGCTAAAGAACC
AGGCGATCGGGCTACGAAAACGCTTTCTGGGCAACGCCAATCTCTGGGAG
TTCTTCGACTTAGAGGACACCACCCGGTACTCAGTGCAGACCAAACTGGT
AATGGCGCCGCTGATCCTCCTGTGCGGTCTGCTCTACTGTGTGGTCAATC
TGCTGCACCTGGTGGTGCAGGTGGTGCGATCGGATGTGCCGCGCACAGTG
GTTGTGTTTGTCCAGCGGGTGGCGAACAGTGGACTCCTGGGCACCATTAC
CATGGGACTGGCCGGTGGCGGAGGCAATGCAGACATTCGAGGACGCCACA
ATCAAGTGATGCGATAATTCTAGTCACCAGTCCGCCGAGGGTACCTCGCT
TATCATTTGCCATGTGCTGGTGGTTTCATAATAAAAGAACAATTTTGGTA
CAATATAAAAAAAAAAAAAAAAAA
GH26280.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34450-RA | 1306 | CG34450-RA | 1..1306 | 1..1306 | 6530 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chrX | 22417052 | chrX | 9220738..9222043 | 1306..1 | 6470 | 99.7 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:08:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9329015..9330321 | 1307..1 | 6535 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23527363 | X | 9337113..9338419 | 1307..1 | 6535 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-15 15:24:00 has no hits.
GH26280.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:24:50 Download gff for
GH26280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chrX | 9220738..9222043 | 1..1306 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:57:12 Download gff for
GH26280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34450-RA | 1..1128 | 90..1217 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:51:44 Download gff for
GH26280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34450-RA | 1..1128 | 90..1217 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:27:38 Download gff for
GH26280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34450-RA | 1..1128 | 90..1217 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:44:20 Download gff for
GH26280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34450-RA | 1..1128 | 90..1217 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:05:27 Download gff for
GH26280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34450-RA | 1..1128 | 90..1217 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:29:40 Download gff for
GH26280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34450-RA | 1..1306 | 1..1306 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:51:44 Download gff for
GH26280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34450-RA | 1..1306 | 1..1306 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:38 Download gff for
GH26280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34450-RA | 167..1472 | 1..1306 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:44:20 Download gff for
GH26280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34450-RA | 1..1306 | 1..1306 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:05:27 Download gff for
GH26280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34450-RA | 167..1472 | 1..1306 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:50 Download gff for
GH26280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9329016..9330321 | 1..1306 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:50 Download gff for
GH26280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9329016..9330321 | 1..1306 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:50 Download gff for
GH26280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9329016..9330321 | 1..1306 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:38 Download gff for
GH26280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9223049..9224354 | 1..1306 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:16:41 Download gff for
GH26280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9337114..9338419 | 1..1306 | 100 | | Minus |
GH26280.pep Sequence
Translation from 89 to 1216
> GH26280.pep
MDKAPGQDSNHRKSLNLLDKALPISVVTAPQLRSRRQFSFNGLRYEMNGL
LPLPPPPATPQVQLSRLSAGGGGGGSQVKKQASGSSHSLNAKTIAETAGG
DGGASRPDRKGVLPKHVTLGDRALLMNGGVRMPRSSELDFPKTKPTAKRS
SSQFSIKAEKQDKKVERKDASGLIQDREALRREKKHRRRPHSMELQERMS
SPDQCDLTAQQSWMLAQTLLKAYGSGLVQTSTGDGASSKMDYITLAGLVL
GCVVSHALFFLCWYFSWLKNQAIGLRKRFLGNANLWEFFDLEDTTRYSVQ
TKLVMAPLILLCGLLYCVVNLLHLVVQVVRSDVPRTVVVFVQRVANSGLL
GTITMGLAGGGGNADIRGRHNQVMR*
GH26280.pep Blast Records
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34450-PA | 375 | CG34450-PA | 1..375 | 1..375 | 1926 | 100 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:47:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD16066-PA | 1046 | GD16066-PA | 218..590 | 1..373 | 1670 | 92.2 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:47:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ18863-PA | 1030 | GJ18863-PA | 920..1027 | 240..347 | 455 | 70.4 | Plus |
GH26280.hyp Sequence
Translation from 89 to 1216
> GH26280.hyp
MDKAPGQDSNHRKSLNLLDKALPISVVTAPQLRSRRQFSFNGLRYEMNGL
LPLPPPPATPQVQLSRLSAGGGGGGSQVKKQASGSSHSLNAKTIAETAGG
DGGASRPDRKGVLPKHVTLGDRALLMNGGVRMPRSSELDFPKTKPTAKRS
SSQFSIKAEKQDKKVERKDASGLIQDREALRREKKHRRRPHSMELQERMS
SPDQCDLTAQQSWMLAQTLLKAYGSGLVQTSTGDGASSKMDYITLAGLVL
GCVVSHALFFLCWYFSWLKNQAIGLRKRFLGNANLWEFFDLEDTTRYSVQ
TKLVMAPLILLCGLLYCVVNLLHLVVQVVRSDVPRTVVVFVQRVANSGLL
GTITMGLAGGGGNADIRGRHNQVMR*
GH26280.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:34:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34450-PA | 375 | CG34450-PA | 1..375 | 1..375 | 1926 | 100 | Plus |