Clone GH26280 Report

Search the DGRC for GH26280

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:262
Well:80
Vector:pOT2
Associated Gene/TranscriptCG34450-RA
Protein status:GH26280.pep: gold
Preliminary Size:1399
Sequenced Size:1324

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12136 2001-01-01 Release 2 assignment
CG32705 2002-05-15 Blastp of sequenced clone
CG32705 2003-01-01 Sim4 clustering to Release 3
CG34450 2008-04-29 Release 5.5 accounting
CG34450 2008-08-15 Release 5.9 accounting
CG34450 2008-12-18 5.12 accounting

Clone Sequence Records

GH26280.complete Sequence

1324 bp (1324 high quality bases) assembled on 2002-05-15

GenBank Submission: AY119548

> GH26280.complete
AAATTTAGGAACATATCGAAAACGTGTAGGGAATCGAGAGCCATCTATAA
ATTCCTGGTGTTGATAGAAGATCACCGATCGAAGCCACCATGGACAAGGC
ACCGGGTCAGGACTCAAATCACAGAAAATCTCTGAATCTGCTGGACAAAG
CGCTGCCCATATCGGTGGTCACCGCACCACAGTTGCGATCTCGCCGCCAA
TTCAGTTTCAATGGCCTGCGGTACGAGATGAATGGGCTGCTACCATTGCC
GCCACCGCCGGCCACGCCGCAGGTGCAGCTCTCGAGGCTCAGTGCAGGTG
GCGGAGGTGGTGGCTCCCAGGTGAAGAAGCAGGCTAGTGGCTCCAGCCAT
TCGCTGAATGCCAAAACTATTGCTGAGACAGCCGGCGGAGATGGTGGTGC
ATCACGGCCGGATCGAAAGGGAGTCTTGCCCAAGCATGTGACATTGGGTG
ACCGAGCCTTGCTGATGAACGGAGGGGTGCGCATGCCCAGGAGCAGCGAG
CTGGACTTCCCGAAAACAAAACCCACAGCGAAAAGGTCATCCTCTCAATT
TTCCATCAAAGCAGAAAAGCAGGACAAGAAGGTGGAGCGTAAGGATGCTT
CGGGACTTATCCAGGATAGAGAAGCCCTCAGACGAGAGAAGAAGCATCGA
CGCAGGCCGCATTCAATGGAATTGCAGGAGAGGATGTCCTCACCGGATCA
GTGTGACCTGACCGCTCAGCAGAGCTGGATGTTGGCCCAGACGCTGCTTA
AGGCCTACGGAAGCGGACTGGTCCAAACTTCCACCGGTGACGGAGCTTCC
TCCAAAATGGACTACATTACTCTGGCCGGATTGGTACTCGGCTGCGTGGT
CTCCCACGCCCTCTTCTTCCTGTGCTGGTACTTCAGTTGGCTAAAGAACC
AGGCGATCGGGCTACGAAAACGCTTTCTGGGCAACGCCAATCTCTGGGAG
TTCTTCGACTTAGAGGACACCACCCGGTACTCAGTGCAGACCAAACTGGT
AATGGCGCCGCTGATCCTCCTGTGCGGTCTGCTCTACTGTGTGGTCAATC
TGCTGCACCTGGTGGTGCAGGTGGTGCGATCGGATGTGCCGCGCACAGTG
GTTGTGTTTGTCCAGCGGGTGGCGAACAGTGGACTCCTGGGCACCATTAC
CATGGGACTGGCCGGTGGCGGAGGCAATGCAGACATTCGAGGACGCCACA
ATCAAGTGATGCGATAATTCTAGTCACCAGTCCGCCGAGGGTACCTCGCT
TATCATTTGCCATGTGCTGGTGGTTTCATAATAAAAGAACAATTTTGGTA
CAATATAAAAAAAAAAAAAAAAAA

GH26280.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG34450-RA 1306 CG34450-RA 1..1306 1..1306 6530 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9220738..9222043 1306..1 6470 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:08:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9329015..9330321 1307..1 6535 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9337113..9338419 1307..1 6535 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:24:00 has no hits.

GH26280.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:24:50 Download gff for GH26280.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9220738..9222043 1..1306 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:57:12 Download gff for GH26280.complete
Subject Subject Range Query Range Percent Splice Strand
CG34450-RA 1..1128 90..1217 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:51:44 Download gff for GH26280.complete
Subject Subject Range Query Range Percent Splice Strand
CG34450-RA 1..1128 90..1217 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:27:38 Download gff for GH26280.complete
Subject Subject Range Query Range Percent Splice Strand
CG34450-RA 1..1128 90..1217 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:44:20 Download gff for GH26280.complete
Subject Subject Range Query Range Percent Splice Strand
CG34450-RA 1..1128 90..1217 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:05:27 Download gff for GH26280.complete
Subject Subject Range Query Range Percent Splice Strand
CG34450-RA 1..1128 90..1217 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:29:40 Download gff for GH26280.complete
Subject Subject Range Query Range Percent Splice Strand
CG34450-RA 1..1306 1..1306 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:51:44 Download gff for GH26280.complete
Subject Subject Range Query Range Percent Splice Strand
CG34450-RA 1..1306 1..1306 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:27:38 Download gff for GH26280.complete
Subject Subject Range Query Range Percent Splice Strand
CG34450-RA 167..1472 1..1306 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:44:20 Download gff for GH26280.complete
Subject Subject Range Query Range Percent Splice Strand
CG34450-RA 1..1306 1..1306 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:05:27 Download gff for GH26280.complete
Subject Subject Range Query Range Percent Splice Strand
CG34450-RA 167..1472 1..1306 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:50 Download gff for GH26280.complete
Subject Subject Range Query Range Percent Splice Strand
X 9329016..9330321 1..1306 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:50 Download gff for GH26280.complete
Subject Subject Range Query Range Percent Splice Strand
X 9329016..9330321 1..1306 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:24:50 Download gff for GH26280.complete
Subject Subject Range Query Range Percent Splice Strand
X 9329016..9330321 1..1306 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:27:38 Download gff for GH26280.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9223049..9224354 1..1306 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:16:41 Download gff for GH26280.complete
Subject Subject Range Query Range Percent Splice Strand
X 9337114..9338419 1..1306 100   Minus

GH26280.pep Sequence

Translation from 89 to 1216

> GH26280.pep
MDKAPGQDSNHRKSLNLLDKALPISVVTAPQLRSRRQFSFNGLRYEMNGL
LPLPPPPATPQVQLSRLSAGGGGGGSQVKKQASGSSHSLNAKTIAETAGG
DGGASRPDRKGVLPKHVTLGDRALLMNGGVRMPRSSELDFPKTKPTAKRS
SSQFSIKAEKQDKKVERKDASGLIQDREALRREKKHRRRPHSMELQERMS
SPDQCDLTAQQSWMLAQTLLKAYGSGLVQTSTGDGASSKMDYITLAGLVL
GCVVSHALFFLCWYFSWLKNQAIGLRKRFLGNANLWEFFDLEDTTRYSVQ
TKLVMAPLILLCGLLYCVVNLLHLVVQVVRSDVPRTVVVFVQRVANSGLL
GTITMGLAGGGGNADIRGRHNQVMR*

GH26280.pep Blast Records

Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG34450-PA 375 CG34450-PA 1..375 1..375 1926 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:47:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16066-PA 1046 GD16066-PA 218..590 1..373 1670 92.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18863-PA 1030 GJ18863-PA 920..1027 240..347 455 70.4 Plus

GH26280.hyp Sequence

Translation from 89 to 1216

> GH26280.hyp
MDKAPGQDSNHRKSLNLLDKALPISVVTAPQLRSRRQFSFNGLRYEMNGL
LPLPPPPATPQVQLSRLSAGGGGGGSQVKKQASGSSHSLNAKTIAETAGG
DGGASRPDRKGVLPKHVTLGDRALLMNGGVRMPRSSELDFPKTKPTAKRS
SSQFSIKAEKQDKKVERKDASGLIQDREALRREKKHRRRPHSMELQERMS
SPDQCDLTAQQSWMLAQTLLKAYGSGLVQTSTGDGASSKMDYITLAGLVL
GCVVSHALFFLCWYFSWLKNQAIGLRKRFLGNANLWEFFDLEDTTRYSVQ
TKLVMAPLILLCGLLYCVVNLLHLVVQVVRSDVPRTVVVFVQRVANSGLL
GTITMGLAGGGGNADIRGRHNQVMR*

GH26280.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG34450-PA 375 CG34450-PA 1..375 1..375 1926 100 Plus