Clone GH26345 Report

Search the DGRC for GH26345

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:263
Well:45
Vector:pOT2
Associated Gene/TranscriptCG6094-RA
Protein status:GH26345.pep: gold
Preliminary Size:951
Sequenced Size:739

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6094 2001-01-01 Release 2 assignment
CG6094 2003-01-01 Sim4 clustering to Release 3
CG6094 2003-05-21 Blastp of sequenced clone
CG6094 2008-04-29 Release 5.5 accounting
CG6094 2008-08-15 Release 5.9 accounting
CG6094 2008-12-18 5.12 accounting

Clone Sequence Records

GH26345.complete Sequence

739 bp (739 high quality bases) assembled on 2003-05-21

GenBank Submission: AY060797

> GH26345.complete
CACAAACGTCGTTCTCGTAACATTTAATTTAGCTTAACTCATTGAAATTT
TGGCATAAAATGAATAAAATTACGAGTGCCTTCATAAGAGTTCTGCGCCA
GAGCAGCTCCTCAGGCGGCACAGGCAACCTTCTGGGTCGTCAGCTCTCCT
ACAAGAGCGATTTATCCCTGGACAAGATCTATCCCGGCGCCCGACTGCAA
ATCTACACGCCGCCCCCGCCGCCCAGTGGCAGCGACAAGTTCAGCGGCTT
CATTCCCATGGACCGACTGGAGATCACCTACAGCAGGAGCTCCGGACCCG
GTGGTCAGCACGTGAACACGGTGAATACCAAGGTGGATGTACGCTTCAAG
GTGGCACAAGCGGACTGGATACCCGAGCAGACGCGCCAGAAGCTGCTCAA
GGTGCTGGCAAACCGGATTACCAAAGACGGCTACTTTTACATCAAGAGTG
ATCTTACGCGCTCCCAGCAAATGAACCTGGCCGATGCGCTGGAGAAGCTG
CGCACCATCATACGCTCCCAGGAGGCTGTGGCACCTGCGCCACCCAGCGA
GGAGACACTGGAGAAGCTGCGCAGGCGCCAGGAGCGAGCGGTCCGCGAAC
GTCTACAACTGAAACGTGGTCGCGCCCAAGTCAAAGCGGATCGGCAGGGA
CCGAGCGGATTAGACTTGTAGTTTTTTATTGGAAATTGTTATACAAAGAT
GCACATTACACATATACGCTTAAAAAAAAAAAAAAAAAA

GH26345.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-RA 980 CG6094-RA 64..786 1..723 3615 100 Plus
CG7384-RA 2346 CG7384-RA 2282..2346 723..659 325 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 10506233..10506733 221..721 2400 98.6 Plus
chr2L 23010047 chr2L 10505950..10506170 1..221 1075 99.1 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:08:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10507418..10507920 221..723 2515 100 Plus
2L 23513712 2L 10507135..10507355 1..221 1105 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:03:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10507418..10507920 221..723 2515 100 Plus
2L 23513712 2L 10507135..10507355 1..221 1105 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:03:04 has no hits.

GH26345.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:04:04 Download gff for GH26345.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 10505950..10506170 1..221 99 -> Plus
chr2L 10506234..10506733 222..721 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:57:14 Download gff for GH26345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 1..612 60..671 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:35:59 Download gff for GH26345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 1..612 60..671 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:01:09 Download gff for GH26345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 1..612 60..671 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:11:54 Download gff for GH26345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 1..612 60..671 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:27:50 Download gff for GH26345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 1..612 60..671 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:39:09 Download gff for GH26345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 19..739 1..721 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:35:59 Download gff for GH26345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 19..739 1..721 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:09 Download gff for GH26345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 15..735 1..721 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:11:55 Download gff for GH26345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 19..739 1..721 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:27:50 Download gff for GH26345.complete
Subject Subject Range Query Range Percent Splice Strand
CG6094-RA 15..735 1..721 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:04:04 Download gff for GH26345.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10507135..10507355 1..221 100 -> Plus
2L 10507419..10507918 222..721 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:04:04 Download gff for GH26345.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10507135..10507355 1..221 100 -> Plus
2L 10507419..10507918 222..721 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:04:04 Download gff for GH26345.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10507135..10507355 1..221 100 -> Plus
2L 10507419..10507918 222..721 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:09 Download gff for GH26345.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10507135..10507355 1..221 100 -> Plus
arm_2L 10507419..10507918 222..721 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:48:21 Download gff for GH26345.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10507135..10507355 1..221 100 -> Plus
2L 10507419..10507918 222..721 100   Plus

GH26345.hyp Sequence

Translation from 59 to 670

> GH26345.hyp
MNKITSAFIRVLRQSSSSGGTGNLLGRQLSYKSDLSLDKIYPGARLQIYT
PPPPPSGSDKFSGFIPMDRLEITYSRSSGPGGQHVNTVNTKVDVRFKVAQ
ADWIPEQTRQKLLKVLANRITKDGYFYIKSDLTRSQQMNLADALEKLRTI
IRSQEAVAPAPPSEETLEKLRRRQERAVRERLQLKRGRAQVKADRQGPSG
LDL*

GH26345.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:34:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-PB 203 CG6094-PB 1..203 1..203 1024 100 Plus
CG6094-PA 203 CG6094-PA 1..203 1..203 1024 100 Plus

GH26345.pep Sequence

Translation from 59 to 670

> GH26345.pep
MNKITSAFIRVLRQSSSSGGTGNLLGRQLSYKSDLSLDKIYPGARLQIYT
PPPPPSGSDKFSGFIPMDRLEITYSRSSGPGGQHVNTVNTKVDVRFKVAQ
ADWIPEQTRQKLLKVLANRITKDGYFYIKSDLTRSQQMNLADALEKLRTI
IRSQEAVAPAPPSEETLEKLRRRQERAVRERLQLKRGRAQVKADRQGPSG
LDL*

GH26345.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:03:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15799-PA 205 GF15799-PA 1..202 1..201 834 87.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23648-PA 203 GG23648-PA 1..203 1..203 950 94.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11680-PA 203 GH11680-PA 1..203 1..203 817 75 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6094-PB 203 CG6094-PB 1..203 1..203 1024 100 Plus
CG6094-PA 203 CG6094-PA 1..203 1..203 1024 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17124-PA 198 GI17124-PA 1..198 1..197 771 75.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26610-PA 203 GL26610-PA 1..203 1..203 752 79.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19347-PA 203 GA19347-PA 1..203 1..203 749 79.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18502-PA 203 GM18502-PA 1..203 1..203 1026 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23712-PA 203 GD23712-PA 1..203 1..203 1026 97.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:03:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16162-PA 201 GJ16162-PA 1..201 1..203 734 77.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14559-PA 200 GK14559-PA 1..200 1..203 809 79.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:03:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18467-PA 203 GE18467-PA 1..203 1..203 1016 96.1 Plus