Clone GH26355 Report

Search the DGRC for GH26355

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:263
Well:55
Vector:pOT2
Associated Gene/TranscriptCG31535-RA
Protein status:GH26355.pep: validated full length
Preliminary Size:1474
Sequenced Size:1306

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31535 2001-11-08 Blastp of sequenced clone

Clone Sequence Records

GH26355.complete Sequence

1306 bp (1306 high quality bases) assembled on 2001-11-08

GenBank Submission: AY069216

> GH26355.complete
CTTTGATCTGAATGTGTGTGTGTTCGCGCGCGGTGCGGGGTAAAAGCAAG
AAAACAAAGGGGAAAATTGGGAAAACCAAACAACATTCTTCTTCCGCCGT
TGCCGAAATTGCGTCGCAGCAAAACATTAACGTTTCTATCCGCCTGACTC
GGCAGCTGCATCCTGCCCGCTACCCCCTCTCGCTCGCACTCAGCCTTGTT
GACTCACGCGAAAGAGACGAAGCGCTCCTATTGGAATTTCATTCGGCTTC
GAAACTTTCATCATCCCGAAAGTTGGCGCTGCAGTGCAGATTGCAGTTGA
GGAATACGAAACCAAATGTCAAGGCTGTTTGCGTGGGCGCGGGCTCCTGC
CCCCCGGCAAAGTTCCAATGTACCACCCCAAGAGGCAGAGCAACTGCACA
GAAGCATATCTGACAGCATACATCAGATACCCCTTACTCAGCTAGAACGA
GTTCGAAGTGGAAATTTCGAAACTAAAATAAAAAATAACATCGTCAATTT
TATACTTTGTGGGGTCCGAATCTAGTATAGTTATTGAGTACTCGGGACTG
ATTAGTTTGAGAAACACAAATTCTGTTTTGCGAAAATGTTTCATCAGGAA
TGCAATATTCAAATCGTAATGCGAATCGAAACTGACTCCATTTTAGAAGT
CTAGTTTTTGATAAGAGTTCATTAGAAAATACCTGTTACACATCATTGGA
TACCTATAAATAAATTATGAACATTTTCAACAAGTTATTTTAATAGCTCG
TATTACCGCCCAAAATTGACCTTTCAAGTTCATAAATTTCAAAATATGCT
TCAGACTTGGATATTGCATATCTTATTTCCCAGTGCACTGTCGCGTTTCT
TAGCTTGTTTAATCGATGATTTCACTTGGCCCGTGTATCGATTTAAGCCG
ATTCAAGGGCGCGGTTAACCGGGTTGCGCCGCCCGCTAGCTGACCTAAAT
CGCAGCCAATCCCGGCCAGGTAACTTTTAGATTGTTTTTCATCACTCTAT
GTCTGACCGTTGCTTTTGGTTTCTTCTGTGTTGCGGAATATGTATACAAA
TAGGCAGAATTTGGTGTCCACGGGACCGTCAACTCTTGCGACGATTAAAG
ACTTACGTTTCAAGCACATTGTTCGTAAGATCATTAACTAAAGACAATTA
CAACAAGAAGATAAAAAATAATTATTAGCTTTACATTGCAACCTAGTCGG
CAAATGTTAAGGTAGAGTTTTTTATTTTCGCCTCAATTGGAATTTATACA
ATAAATAGTATATTTGTGTAAACAAATATGCATTAACTTAAAAAAAAAAA
AAAAAA

GH26355.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:00:49
Subject Length Description Subject Range Query Range Score Percent Strand
UbcD6.c 2141 UbcD6.c 69..205 833..969 670 99.2 Plus
UbcD6-RB 2023 UbcD6-RB 1..87 883..969 420 98.8 Plus
UbcD6.a 2005 UbcD6.a 1..69 1143..1211 345 100 Plus
UbcD6.c 2141 UbcD6.c 31..69 1..39 195 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:13:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 776472..777760 1289..1 6430 99.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:08:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:13:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4950790..4952079 1290..1 6435 99.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 4691621..4692910 1290..1 6435 99.9 Minus
Blast to na_te.dros performed 2019-03-16 03:13:48
Subject Length Description Subject Range Query Range Score Percent Strand
INE-1 611 INE-1 INE1 611bp Derived from U66884 (e1371475) (Rel. 52, Last updated, Version 6). 525..566 463..422 129 78.6 Minus
gypsy2 6841 gypsy2 GYPSY2 6841bp 5003..5082 1278..1202 113 63.7 Minus

GH26355.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:14:26 Download gff for GH26355.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 776472..777760 1..1289 96   Minus
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 20:01:47 has no hits.
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:34:10 Download gff for GH26355.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD6-RB 1..96 883..981 93   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:56:20 Download gff for GH26355.complete
Subject Subject Range Query Range Percent Splice Strand
UbcD6-RB 1..96 883..981 93   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 20:01:47 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:26 Download gff for GH26355.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4950791..4952079 1..1289 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:26 Download gff for GH26355.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4950791..4952079 1..1289 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:26 Download gff for GH26355.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4950791..4952079 1..1289 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:56:20 Download gff for GH26355.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 776513..777801 1..1289 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:56:20 Download gff for GH26355.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 776513..777801 1..1289 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:38:41 Download gff for GH26355.complete
Subject Subject Range Query Range Percent Splice Strand
3R 4691622..4692910 1..1289 99   Minus

GH26355.pep Sequence

Translation from 11 to 412

> GH26355.pep
MCVCSRAVRGKSKKTKGKIGKTKQHSSSAVAEIASQQNINVSIRLTRQLH
PARYPLSLALSLVDSRERDEALLLEFHSASKLSSSRKLALQCRLQLRNTK
PNVKAVCVGAGSCPPAKFQCTTPRGRATAQKHI*
Sequence GH26355.pep has no blast hits.

GH26355.hyp Sequence

Translation from 11 to 412

> GH26355.hyp
MCVCSRAVRGKSKKTKGKIGKTKQHSSSAVAEIASQQNINVSIRLTRQLH
PARYPLSLALSLVDSRERDEALLLEFHSASKLSSSRKLALQCRLQLRNTK
PNVKAVCVGAGSCPPAKFQCTTPRGRATAQKHI*
Sequence GH26355.hyp has no blast hits.