GH26355.complete Sequence
1306 bp (1306 high quality bases) assembled on 2001-11-08
GenBank Submission: AY069216
> GH26355.complete
CTTTGATCTGAATGTGTGTGTGTTCGCGCGCGGTGCGGGGTAAAAGCAAG
AAAACAAAGGGGAAAATTGGGAAAACCAAACAACATTCTTCTTCCGCCGT
TGCCGAAATTGCGTCGCAGCAAAACATTAACGTTTCTATCCGCCTGACTC
GGCAGCTGCATCCTGCCCGCTACCCCCTCTCGCTCGCACTCAGCCTTGTT
GACTCACGCGAAAGAGACGAAGCGCTCCTATTGGAATTTCATTCGGCTTC
GAAACTTTCATCATCCCGAAAGTTGGCGCTGCAGTGCAGATTGCAGTTGA
GGAATACGAAACCAAATGTCAAGGCTGTTTGCGTGGGCGCGGGCTCCTGC
CCCCCGGCAAAGTTCCAATGTACCACCCCAAGAGGCAGAGCAACTGCACA
GAAGCATATCTGACAGCATACATCAGATACCCCTTACTCAGCTAGAACGA
GTTCGAAGTGGAAATTTCGAAACTAAAATAAAAAATAACATCGTCAATTT
TATACTTTGTGGGGTCCGAATCTAGTATAGTTATTGAGTACTCGGGACTG
ATTAGTTTGAGAAACACAAATTCTGTTTTGCGAAAATGTTTCATCAGGAA
TGCAATATTCAAATCGTAATGCGAATCGAAACTGACTCCATTTTAGAAGT
CTAGTTTTTGATAAGAGTTCATTAGAAAATACCTGTTACACATCATTGGA
TACCTATAAATAAATTATGAACATTTTCAACAAGTTATTTTAATAGCTCG
TATTACCGCCCAAAATTGACCTTTCAAGTTCATAAATTTCAAAATATGCT
TCAGACTTGGATATTGCATATCTTATTTCCCAGTGCACTGTCGCGTTTCT
TAGCTTGTTTAATCGATGATTTCACTTGGCCCGTGTATCGATTTAAGCCG
ATTCAAGGGCGCGGTTAACCGGGTTGCGCCGCCCGCTAGCTGACCTAAAT
CGCAGCCAATCCCGGCCAGGTAACTTTTAGATTGTTTTTCATCACTCTAT
GTCTGACCGTTGCTTTTGGTTTCTTCTGTGTTGCGGAATATGTATACAAA
TAGGCAGAATTTGGTGTCCACGGGACCGTCAACTCTTGCGACGATTAAAG
ACTTACGTTTCAAGCACATTGTTCGTAAGATCATTAACTAAAGACAATTA
CAACAAGAAGATAAAAAATAATTATTAGCTTTACATTGCAACCTAGTCGG
CAAATGTTAAGGTAGAGTTTTTTATTTTCGCCTCAATTGGAATTTATACA
ATAAATAGTATATTTGTGTAAACAAATATGCATTAACTTAAAAAAAAAAA
AAAAAA
GH26355.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:00:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
UbcD6.c | 2141 | UbcD6.c | 69..205 | 833..969 | 670 | 99.2 | Plus |
UbcD6-RB | 2023 | UbcD6-RB | 1..87 | 883..969 | 420 | 98.8 | Plus |
UbcD6.a | 2005 | UbcD6.a | 1..69 | 1143..1211 | 345 | 100 | Plus |
UbcD6.c | 2141 | UbcD6.c | 31..69 | 1..39 | 195 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:13:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3R | 27901430 | chr3R | 776472..777760 | 1289..1 | 6430 | 99.9 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:08:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:13:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4950790..4952079 | 1290..1 | 6435 | 99.9 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 31820162 | 3R | 4691621..4692910 | 1290..1 | 6435 | 99.9 | Minus |
Blast to na_te.dros performed 2019-03-16 03:13:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
INE-1 | 611 | INE-1 INE1 611bp Derived from U66884 (e1371475) (Rel. 52, Last updated, Version 6). | 525..566 | 463..422 | 129 | 78.6 | Minus |
gypsy2 | 6841 | gypsy2 GYPSY2 6841bp | 5003..5082 | 1278..1202 | 113 | 63.7 | Minus |
GH26355.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:14:26 Download gff for
GH26355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3R | 776472..777760 | 1..1289 | 96 | | Minus |
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 20:01:47 has no hits.
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:34:10 Download gff for
GH26355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD6-RB | 1..96 | 883..981 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:56:20 Download gff for
GH26355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
UbcD6-RB | 1..96 | 883..981 | 93 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 20:01:47 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:26 Download gff for
GH26355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4950791..4952079 | 1..1289 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:26 Download gff for
GH26355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4950791..4952079 | 1..1289 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:14:26 Download gff for
GH26355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4950791..4952079 | 1..1289 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:56:20 Download gff for
GH26355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 776513..777801 | 1..1289 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:56:20 Download gff for
GH26355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 776513..777801 | 1..1289 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:38:41 Download gff for
GH26355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4691622..4692910 | 1..1289 | 99 | | Minus |
GH26355.pep Sequence
Translation from 11 to 412
> GH26355.pep
MCVCSRAVRGKSKKTKGKIGKTKQHSSSAVAEIASQQNINVSIRLTRQLH
PARYPLSLALSLVDSRERDEALLLEFHSASKLSSSRKLALQCRLQLRNTK
PNVKAVCVGAGSCPPAKFQCTTPRGRATAQKHI*
Sequence GH26355.pep has no blast hits.
GH26355.hyp Sequence
Translation from 11 to 412
> GH26355.hyp
MCVCSRAVRGKSKKTKGKIGKTKQHSSSAVAEIASQQNINVSIRLTRQLH
PARYPLSLALSLVDSRERDEALLLEFHSASKLSSSRKLALQCRLQLRNTK
PNVKAVCVGAGSCPPAKFQCTTPRGRATAQKHI*
Sequence GH26355.hyp has no blast hits.