Clone GH26440 Report

Search the DGRC for GH26440

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:264
Well:40
Vector:pOT2
Associated Gene/TranscriptRbp9-RE
Protein status:GH26440.pep: gold
Preliminary Size:2301
Sequenced Size:6988

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3151 2001-01-01 Release 2 assignment
CG3151 2003-01-01 Sim4 clustering to Release 3
CG3151 2003-04-24 Blastp of sequenced clone
Rbp9 2008-04-29 Release 5.5 accounting
Rbp9 2008-08-15 Release 5.9 accounting
Rbp9 2008-12-18 5.12 accounting

Clone Sequence Records

GH26440.complete Sequence

6988 bp (6988 high quality bases) assembled on 2003-04-24

GenBank Submission: BT011197

> GH26440.complete
AGCAAGTTGTGTTTTTTGATTCTCGTCGTATTGTCGTCGTTTCTGAATTG
TTGTATATCGGTATCAAAATACACACATCTTGCATACTCACGCAACTACG
CCCACATACACATATACATGTACGTGTGTCCAATTGCACGTAGTGTGGAA
TCCGAATCAGTATCGAAATCAGTTCGAAAACCCTTAGTGTGTGCGTGCTC
AATTCAGTTTTCAAATTGAAACTACATCATTTGCAACGAAGAACATTTTC
CAGTCCCAGTTCCAGAACCATTTTCTTTCGAGTCGAGTTGGGAAAATCGG
TGTTGTATGCTTTGCGGCGCTGGCGAATAAATTAATCCTTCTGACATACC
ACATTACTCATTCGTAGTGGATATCGTTGGTGTGGCGCTTTTAACTAGGC
TATAGTAGGAGGAGCCAAGAACGGGCAGCGGACTATCTTTAATCCACTGC
CGTTGCTAGGAGTGTGCATCTGAAAGGGACTTCACAGCAGTATTATATCT
ACAGCCACTTATTTGATTTACGCGCCATCTCTATTTCTGTCTATTGAACA
AGTTTTCGAAGAAGAAAGCTCAGCGTTCGCAAGATGGTCGAGGGTCAGAC
AGCCGTTCAGCAGCAGCAGCAGCAACCATCCGGCGCGGGCGGTGCCAGCG
GCGTGGGAAGCACCACCGGATCCGCTGGAGGACCGGCTACGGCCAACAAT
GTGACCAACAGTCAGGCCCAAACCAATGGGGGCACCACTGCGACCACGAC
TGCCGCAGCGGGTGCCGGATCCACGACAAATGCGGCCGTCGGCCAGGCCA
CAGCAAACAATGCTGCGAGCAACAACAACAATAATAATAATAATACCAAC
AACAACAATAACAATAACGCCACTGCAAACAACAACAACAATAATGAGCC
AGACCCCAAGACCAATTTGATTGTGAACTACTTGCCACAGACGATGTCGC
AGGACGAGATCCGTTCGTTGTTCGTCAGTTTTGGCGAGGTGGAGAGCTGC
AAGTTGATACGCGACAAGGTGACAGGACAAAGTCTGGGCTACGGATTCGT
GAACTACGTGAAGCAGGAGGATGCGGAAAAGGCAATCAACGCATTGAACG
GCCTCAGGCTGCAGAACAAAACCATCAAGGTCTCCATTGCACGCCCCAGC
TCCGAGAGCATCAAGGGTGCCAATCTCTATGTATCGGGTCTTCCAAAAAA
TATGACACAGTCGGATTTGGAATCATTGTTCAGTCCATACGGCAAGATCA
TAACCTCGCGTATTCTTTGTGATAATATCACTGGTCTCTCCAAGGGCGTT
GGCTTTATACGCTTCGATCAGCGATTTGAGGCCGACCGGGCCATTAAAGA
GCTGAACGGCACCACTCCGAAGAATTCCACCGAACCCATAACCGTCAAGT
TCGCCAACAATCCTAGCAGCAATAAGAACAGCATGCAGCCTTTGGCAGCC
TATATAGCGCCCCAAAATACGCGTGGCGGACGAGCATTTCCGGCCAACGC
TGCTGCCGGAGCGGCAGCCGCCGCCGCTGCAGCTGCCATCCACCCCAATG
CGGGCCGATACAGCTCTGTAATCTCGCGATATTCACCGTTGACCAGTGAC
CTGATCACTAATGGCATGATCCAAGGCAACACCATTGCCAGCTCCGGCTG
GTGCATTTTCGTCTACAACCTGGCGCCCGATACCGAGGAGAACGTGCTGT
GGCAACTGTTTGGGCCCTTCGGAGCAGTGCAATCTGTTAAGGTGATTCGT
GATCTGCAGAGCAACAAGTGCAAGGGCTTTGGCTTCGTCACCATGACGAA
TTACGAAGAGGCTGTCCTGGCCATACAGTCGCTGAACGGCTACACACTTG
GCAACCGAGTGCTTCAGGTCAGCTTTAAGACCAACAAGAACAAGCAAACG
TAATTATTAACCAAGTTGGCTGCTGTTGTCAATGCCAATGCGGCGGCGGC
AGCTCTGGCGGCCAATGGTCTAGTCCTCCATAATCATCACCACCACAGCA
ACATCGGTAGCATCAACAATAATAGTAACAACAGCAACGGCTGCAGTGCA
GCAGCCTTTCCACTTGGCAAATACGTTAACCACAGCAGCAACAACAGGCA
GCACAACATCAACAATAGCACTAGCAACACGAGCAAACAGAAGCCAGCCT
CCACGAGCAACAAGCAACAATCAATGGCGCCACCTAAGAGATTAGCGAGC
AGCACTGCTGCAACAACGGGGGACTTGGCCGCAACTGCTGCCACCAACAG
CAGTAGCAGCAGTCACTCGGCGTCCAGCGGAGATGCTGGAGCCACCGGCA
CAGCCGCATCCTCCTCGTCATCGTCGTCGTCGACAAACAACAACATCCTG
AAGACATCCACGAAATTTATTTACAACAAGCCCCAGAACCAATACGAGTT
GTTGCAGCAGCAGCTGCAGCTGCAGCAGGAGTTCGCCCAGTTTTTGACCA
ATGTGGCCAACAGCGCCGCAACGCCATCCAGCAACGGCTCGGCCAACTCG
ACAAACCAGCGTAATGGAGGAGGAACCATCGGCATGGGTCTGGGAATGTC
GGCCAACTCAGCCGGCGGAGGTTCGGGCAACAAAAACAGTAACGGCAACA
ATGGCTATATGCCAACCTGGTCGAATTGGTTCTTTTAAAGTTCACTTTGG
TTTGTCATCAGTCCATTTCACGGATCCTTTGTAATTTTAGGCAACGATTA
CTCAGTTTTTGGTTTATTGATATAAGTTTGAATTGCGCGAAATAACAGAA
TTGTTCACGTTTTGAGTTATGAATTTGTTTTTTCAGTGAAATAATGTAAC
CATAATTTCTTACGTTGACTAAGTTCTGAAATGGTTTTTTTTTTTTTTGC
TTATGCTCCCATTATTCTTTTAAGATTACATTCAATTTAATGTAGAACTT
ACATCTTTCGTTAATGCACTTTTAAACTGTCTAGTCGACTCTCCCGAAGA
AAAAAGCTTCCATGAGGAAAAGGGAATACAGAAAAGATAATGCTATAGTT
AAGTTTTTGTTTGAGGTGTAGGAAACGCATACTCTACGGATATTTTTAAA
CAAAGAGTAAAAATACAATTTGCAGGCATAGAAGCCCCAAACCACCAAAG
AATGAAAACAAACTTGACAAATATTTAAGCTATAAATAAATGTATAAAAG
CGATACGAAAACAGAACTGAATGAGTAAACAGATAGAGGCGTTTGGCTTA
TAGTCAAACCACTTGCAAATAGACAATGCAGAATGAGAAGGCAGCTAGAT
GCGAAAGAAAACCAAACAAAGGAAAACAGAAAAGCAAAATAAATAAGACA
TACGCGTGTTTATGTTTCATAAATCTAATGTAAAACTTTTGCTAAAAATA
AATGGTGTATGCATAATACAACAAGTAAACCTTTTATTCTCCATTACCAT
TTGTTCGATTGCCCAGTTAAACTTCGCCTAGCCACTTTCATACATATGTT
AACCATTACCTATCCTTCGGCACTACACTTAAATATAGACTCTCTAAGAT
CTTAACAGGGACATTAGCATGAGGGACAGAAAGCCGAGAGGAAGGGCCCA
CGAGAATTTCTTCAAATACAACGAATAAATATTTAAGAAAATTTGAAACC
AGCAAGTGGAAATGCAACACCTGTCGAGTCAGAGAGAGAGAGAGAATTCA
AATACAAAGTAACCAGCGATTGTAAAGCTTAAACAAAAGCCAGCTAAGTA
CGCTAAGCACGCCACTCCAATCGAAGTTAGTTAATATAACTAAAGACAAA
GATCAGAACAAAGTCCCTCCCTAGACAAGCAAGTGAGAAAATGAAATGAA
AACTTACATACATAGATGACAAAACGCGTTTCAGCCTAACGAATTTGTTT
AAGCCCAACTCAACAGCAATAAAAAAACACAACGTAACGAACAAATTAAA
CAAATTGCCAAACTAAATATAGCAAATTTTAATAAACAGTAATGGACATG
GAATGAGAATGGTTGATAATTGAAGTTTTTCAAGAGCCTGGCAATGACAA
GTTATGACAAGACAAGTTATACATATGATGGTGCTTCACAGAATTCCTTG
TAGAAGAAGTTAAATGCAAAAAATAAATAGTATTTGTAATATGCAGTTTT
ATGTTCCCTGTTTTCAAGTTGATCCTTTCCTTTAAAGTGCCGTGAACCCA
TTATGGAAAAATCGAGATGTTACTCAACATTTACTATGCTATATCTCTCT
ATAAAATCTATAACTATTTATGAAAACTATTACATATGATTAACAATATA
TTGATGTTGTGTATTGCAAATTTTAAATGTTTATACATACATACATACCG
CGAAAATTATTATGAATACTAATTCATGGCATGCGAATAACGGAAATCCA
TTTTCATGTATACGTCAAGTAAATTTATTGCATACTACTTAAAACTAATT
ACCATGAACAAATTATATATTCAAGTATATATATTGCGATTATTAGGTAT
GTATGTGTGTAGTGCATAGAGAAACCGAAACGCCAAGCCTCCAATATTTG
TAGAGCTCAACGGCTTTTTCTCCCCTACTCCACTAAATCTACTAGAAAAT
CCAGCAAAAAAGAAAACCCCACATTACTCACACTCATGCGCAAAAGCTTG
ACTGAAATTAAAATAGAAATTCTGGCTTTTAAGCGTAAGGTAAATTAGTC
ATAAAACCTTCCAGCAAGTCTCAAATGCAAGTTCAAGAAAACTCAACATA
ACGTAAAAGCTATAAGGAGAACACCAAATGAAACGTTTTTTATACAAGAT
GTAAAAAATTGAGGCACAATTTTTGGTGCATGCGTGTGACACGGCTGATA
GCAGACATACATGCATAGACGTGAATGGACATGCTTCGACATGATATCCA
GGCATACGCGGTTAAGTGAATGAAAAGCATAAACAACAACAAAAAGCAAT
CGATTATATACATTTTTTAAGATGAAATGTTTTATAAATGATAAATACAA
ATGGAGGAAAACCAAGAAAGTATTTTAAAAATTTAAATATATACATGAGT
ACTATATACAAAATATTAAATTATATATACATATTAAATACTTACTGGGT
AACGAACAAAAACACCGCACAATAATATACAAAACAAAACGAAATCGAGG
AAAGGGAATGGCACGTCAAGATGGGAGAAACATACGTAAATAATAACAAA
TACCAGAAGAGAATGTTTAACTAAATGCAGAAAAGACTAACGACGAATCG
AGAAAACTATGAAACCAGCAAATTTATAATTTTTACATGGAAATCGCAAT
AATGTTAACATTTAAAGAAGACGAAAAACAAAGAGCATATCTTGAAAACA
AAGGAAGAGTATTGAGGAGGGATCTCAAGCAACGGAACGATATCGAAGAC
ACAAAAATCGACAAGTTACCACAAATTTTAACTACCAAGTGAATGGCTTA
ATTACGGCACACTTTTATACTTTTACACCAAAACAAAAGAAACGAATCGA
AACGAAACAAAAGCAAAAACCAAAGACGTATGTATAAATGGCGATCGATT
TAACCGTGCAAAATCGTTTCTCGATGCACCTTCGCGTTCTGAAGCCAATA
TGGTTGTGCAAATGCCTGCAGACGCCACCGGAAACGGAAACGTCTGCAGA
GCGCCCTCTTTAGGCGGCTTGTAAACGATGCAAACGTGCAACCCTGCAAC
CGCTGCATCGTTTACACTCGGCTTGAAATGTCTGTTTCTCTCACACAGAT
CACACACACACCCCACACAGACACACTCTCTTATCCTTACCCACTAGTCT
CACTTAAATGAATGTTGAATAGCAAGGAAACCCAGTAGTACCACGAGCCA
CTCGTGTGCAAACGAAACGAAAACGGAAGGAAGTCTAGCAGTTGCGATCT
ATCTGAGAAGTGTAATTGATGGCTTTTAGGCGTAGCTACACACATACAAA
GAACTGGCGCCCCCAGATCGTTTGAATTATCGGGGCAGGAAATCGACTCC
CCACACATTTTCGCCTGATTTTGAACTGTACGAACAAACTATCTATCCCG
GCCCAGATCTTTGTTTCGGCTGTAGCATCCTCTAAGAAGAACCAGCTATC
GATCATATTGCAAGGAATCGAATAACATTTTGTAGTGCAAGTCATCAGTA
AGTTGCGGACGGAAATACGCTCTTTATATGTATATGTTTAAATGTTCAAG
CAAGCAAGAAATGGAAACACTTAAGATATATTATAAATTAATTAAAACCA
AATCTTAGTCGAAACGAACTTAGTCAAAGGTACTAATTTTAAGCACTATT
GTTAAACGCAAGTCAAAAGGCAACGGATGAAGGAATCACTTTAGCCAAAA
CGGAAACAAAAATATTGAATCTTAACTGAATCTGAAACTCAGAAACTCTA
GTGGCATTCGCTCTTTCAAGCTCAACATAAGTTAATGAACATATGAATTC
CACATAACAGATTATAATAATTCAAACTTATTTATATTTGTCTATCGGTT
AGCTTGCATAATACACTTATGCCACATATTACATATGTATGAAGAACTAT
GCAACCTTTTTTCTCGTCGTTATAAAAAATAGTCGAAATATTGGTGGACA
GTATCGTATTGTAGTAGCTAATATGTATTTACCTTTAATCATCACCGAAC
AAAACAGAAAACAATTATTCCAATTTAATTAAAGTGCATAAATTGTATAT
TGAATTACTGTCGTGTTCTCTCATATGGACGCGAAACCTTAAAGTTTTTC
TTCAAATTCGCATTATATTACTTAAAAGACAAAAACCAAGAAACCGAAAC
AAAACAAAATCACAATATTAAGTGCGGAAAATGTCAAGCAAATTTATATA
GCATATTTATGGTATACTCTGTGCAAGATTTATTAAGAATCAATTATACT
TCATTATGGATTACTCTGAGAATTTACAAACAACAAACACACACTACACA
CGATGAATGAAAGCAAAAATTTATTCAAATAAAGCTATGAAATGATGTGT
TTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH26440.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:56:19
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp9-RG 7024 Rbp9-RG 74..7024 1..6952 34720 99.9 Plus
Rbp9.l 4280 Rbp9.l 74..4280 1..4208 21000 99.9 Plus
Rbp9.e 4293 Rbp9.e 415..4293 329..4208 19345 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 2962871..2968083 1740..6952 25765 99.7 Plus
chr2L 23010047 chr2L 2960866..2961321 571..1026 2280 100 Plus
chr2L 23010047 chr2L 2956581..2956912 1..332 1660 100 Plus
chr2L 23010047 chr2L 2962233..2962513 1283..1563 1405 100 Plus
chr2L 23010047 chr2L 2961384..2961646 1023..1285 1315 100 Plus
chr2L 23010047 chr2L 2962599..2962784 1560..1745 915 99.5 Plus
chr2L 23010047 chr2L 2960338..2960483 333..478 730 100 Plus
chrX 22417052 chrX 12836199..12836443 1649..1893 640 84.1 Plus
chr2L 23010047 chr2L 2960542..2960634 478..570 465 100 Plus
chrX 22417052 chrX 411835..412068 1887..1654 345 76.5 Minus
chrX 22417052 chrX 12834465..12834600 1283..1418 215 77.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:09:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:26:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2963223..2968439 1740..6957 26040 100 Plus
2L 23513712 2L 2961218..2961673 571..1026 2280 100 Plus
2L 23513712 2L 2956933..2957264 1..332 1660 100 Plus
2L 23513712 2L 2962585..2962865 1283..1563 1405 100 Plus
2L 23513712 2L 2961735..2961998 1022..1285 1320 100 Plus
2L 23513712 2L 2962951..2963136 1560..1745 930 100 Plus
2L 23513712 2L 2960690..2960835 333..478 730 100 Plus
X 23542271 X 12945236..12945480 1649..1893 640 84.1 Plus
2L 23513712 2L 2960894..2960986 478..570 465 100 Plus
X 23542271 X 517802..518035 1887..1654 345 76.5 Minus
X 23542271 X 12943512..12943647 1283..1418 215 77.2 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:52:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2963223..2968439 1740..6957 26050 99.9 Plus
2L 23513712 2L 2961218..2961673 571..1026 2280 100 Plus
2L 23513712 2L 2956933..2957264 1..332 1660 100 Plus
2L 23513712 2L 2962585..2962865 1283..1563 1405 100 Plus
2L 23513712 2L 2961735..2961998 1022..1285 1320 100 Plus
2L 23513712 2L 2962951..2963136 1560..1745 930 100 Plus
2L 23513712 2L 2960690..2960835 333..478 730 100 Plus
X 23527363 X 12953334..12953578 1649..1893 640 84 Plus
2L 23513712 2L 2960894..2960986 478..570 465 100 Plus
X 23527363 X 525900..526020 1887..1767 275 81.8 Minus
X 23527363 X 526559..526672 1210..1097 165 76.3 Minus
X 23527363 X 12951707..12951745 1380..1418 150 92.3 Plus
X 23527363 X 12950831..12950922 911..1002 145 77.1 Plus
Blast to na_te.dros performed 2019-03-16 17:26:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2355..2813 1979..2431 289 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2391..2849 1979..2431 252 56.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6845..7113 1979..2236 179 60 Plus
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 309..576 6374..6645 168 58.4 Plus
Quasimodo 7387 Quasimodo QUASIMODO 7387bp Derived from P1 clones DS08479 & DS07153 by Sue Celniker, 29 March 2001. 970..1098 3775..3898 155 62.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 7006..7187 1989..2174 153 58.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1514..1586 1972..2046 145 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2602..2971 2009..2427 144 56.4 Plus
Dkoe\Gandalf 979 Dkoe\Gandalf DK29466 979bp Derived from U29466 (Rel. 63, Last updated, Version 5). 805..912 2759..2869 141 64.6 Plus
Dbif\P-element_M 2935 Dbif\P-element_M P_M 2935bp Derived from X60990. 1952..2041 4201..4289 140 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2321..2482 2373..2534 134 59.5 Plus
Idefix 7411 Idefix DME9736 7411bp Derived from AJ009736 (e1371475) (Rel. 58, Last updated, Version 1). 819..971 4547..4707 129 60 Plus
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 615..717 5008..5103 128 64.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 549..656 5089..5197 127 60.9 Plus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 690..748 6599..6658 126 70 Plus

GH26440.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:26:48 Download gff for GH26440.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 2962234..2962513 1284..1563 100 -> Plus
chr2L 2962603..2962780 1564..1741 99 -> Plus
chr2L 2956581..2956912 1..332 100 -> Plus
chr2L 2960338..2960483 333..478 100 -> Plus
chr2L 2960543..2960634 479..570 100 -> Plus
chr2L 2960866..2961114 571..819 100 == Plus
chr2L 2961190..2961320 895..1025 100 -> Plus
chr2L 2961387..2961644 1026..1283 100 -> Plus
chr2L 2962873..2963122 1742..1991 100 == Plus
chr2L 2963187..2966101 2056..4970 99 == Plus
chr2L 2966172..2968083 5041..6952 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:43:47 Download gff for GH26440.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RI 1..697 584..1280 100 <- Plus
Rbp9-RI 714..1335 1281..1903 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:47:30 Download gff for GH26440.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RI 1..697 584..1280 100 <- Plus
Rbp9-RI 714..1335 1281..1903 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:56:06 Download gff for GH26440.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RJ 1..2055 584..2638 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:47:04 Download gff for GH26440.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RI 1..697 584..1280 100 <- Plus
Rbp9-RI 714..1335 1281..1903 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:10 Download gff for GH26440.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RJ 1..2055 584..2638 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:43:47 Download gff for GH26440.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RG 1..6951 1..6952 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:47:30 Download gff for GH26440.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RG 23..6973 1..6952 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:56:06 Download gff for GH26440.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RG 23..6976 1..6952 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:47:05 Download gff for GH26440.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RG 1..6951 1..6952 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:10 Download gff for GH26440.complete
Subject Subject Range Query Range Percent Splice Strand
Rbp9-RG 23..6976 1..6952 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:26:48 Download gff for GH26440.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2956933..2957264 1..332 100 -> Plus
2L 2960690..2960835 333..478 100 -> Plus
2L 2960895..2960986 479..570 100 -> Plus
2L 2961218..2961672 571..1025 100 -> Plus
2L 2961739..2961996 1026..1283 100 -> Plus
2L 2962586..2962865 1284..1563 100 -> Plus
2L 2962955..2963132 1564..1741 100 -> Plus
2L 2963225..2968434 1742..6952 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:26:48 Download gff for GH26440.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2956933..2957264 1..332 100 -> Plus
2L 2960690..2960835 333..478 100 -> Plus
2L 2960895..2960986 479..570 100 -> Plus
2L 2961218..2961672 571..1025 100 -> Plus
2L 2961739..2961996 1026..1283 100 -> Plus
2L 2962586..2962865 1284..1563 100 -> Plus
2L 2962955..2963132 1564..1741 100 -> Plus
2L 2963225..2968434 1742..6952 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:26:48 Download gff for GH26440.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2956933..2957264 1..332 100 -> Plus
2L 2960690..2960835 333..478 100 -> Plus
2L 2960895..2960986 479..570 100 -> Plus
2L 2961218..2961672 571..1025 100 -> Plus
2L 2961739..2961996 1026..1283 100 -> Plus
2L 2962586..2962865 1284..1563 100 -> Plus
2L 2962955..2963132 1564..1741 100 -> Plus
2L 2963225..2968434 1742..6952 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:56:06 Download gff for GH26440.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2962955..2963132 1564..1741 100 -> Plus
arm_2L 2963225..2968434 1742..6952 99   Plus
arm_2L 2956933..2957264 1..332 100 -> Plus
arm_2L 2960690..2960835 333..478 100 -> Plus
arm_2L 2960895..2960986 479..570 100 -> Plus
arm_2L 2961218..2961672 571..1025 100 -> Plus
arm_2L 2961739..2961996 1026..1283 100 -> Plus
arm_2L 2962586..2962865 1284..1563 100 -> Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:27:12 Download gff for GH26440.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2962955..2963132 1564..1741 100 -> Plus
2L 2963225..2968434 1742..6952 99   Plus
2L 2962586..2962865 1284..1563 100 -> Plus
2L 2956933..2957264 1..332 100 -> Plus
2L 2960690..2960835 333..478 100 -> Plus
2L 2960895..2960986 479..570 100 -> Plus
2L 2961218..2961672 571..1025 100 -> Plus
2L 2961739..2961996 1026..1283 100 -> Plus

GH26440.hyp Sequence

Translation from 583 to 1902

> GH26440.hyp
MVEGQTAVQQQQQQPSGAGGASGVGSTTGSAGGPATANNVTNSQAQTNGG
TTATTTAAAGAGSTTNAAVGQATANNAASNNNNNNNNTNNNNNNNATANN
NNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQS
LGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYV
SGLPKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEA
DRAIKELNGTTPKNSTEPITVKFANNPSSNKNSMQPLAAYIAPQNTRGGR
AFPANAAAGAAAAAAAAAIHPNAGRYSSVISRYSPLTSDLITNGMIQGNT
IASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFG
FVTMTNYEEAVLAIQSLNGYTLGNRVLQVSFKTNKNKQT*

GH26440.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:35:11
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp9-PH 439 CG3151-PH 1..439 1..439 2243 100 Plus
Rbp9-PJ 684 CG3151-PJ 1..439 1..439 2243 100 Plus
Rbp9-PG 439 CG3151-PG 1..439 1..439 2243 100 Plus
Rbp9-PF 439 CG3151-PF 1..439 1..439 2243 100 Plus
Rbp9-PE 439 CG3151-PE 1..439 1..439 2243 100 Plus

GH26440.pep Sequence

Translation from 583 to 1902

> GH26440.pep
MVEGQTAVQQQQQQPSGAGGASGVGSTTGSAGGPATANNVTNSQAQTNGG
TTATTTAAAGAGSTTNAAVGQATANNAASNNNNNNNNTNNNNNNNATANN
NNNNEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQS
LGYGFVNYVKQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYV
SGLPKNMTQSDLESLFSPYGKIITSRILCDNITGLSKGVGFIRFDQRFEA
DRAIKELNGTTPKNSTEPITVKFANNPSSNKNSMQPLAAYIAPQNTRGGR
AFPANAAAGAAAAAAAAAIHPNAGRYSSVISRYSPLTSDLITNGMIQGNT
IASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFG
FVTMTNYEEAVLAIQSLNGYTLGNRVLQVSFKTNKNKQT*

GH26440.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14992-PA 660 GF14992-PA 1..422 1..429 1735 89.2 Plus
Dana\GF21392-PA 353 GF21392-PA 10..353 91..439 1262 67.2 Plus
Dana\GF22224-PA 490 GF22224-PA 136..490 90..437 994 54.8 Plus
Dana\GF21012-PA 757 GF21012-PA 108..272 110..274 442 48.5 Plus
Dana\GF20968-PA 379 GF20968-PA 97..292 79..274 432 40.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:18:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24901-PA 446 GG24901-PA 1..446 1..439 2210 96.6 Plus
Dere\GG17743-PA 353 GG17743-PA 10..353 91..439 1258 66.9 Plus
Dere\GG12756-PA 466 GG12756-PA 124..466 89..437 1021 56.8 Plus
Dere\GG12847-PA 513 GG12847-PA 101..265 110..274 445 49.1 Plus
Dere\GG17637-PA 335 GG17637-PA 79..249 107..274 436 45 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13638-PA 726 GH13638-PA 108..431 105..428 1636 98.8 Plus
Dgri\GH24423-PA 353 GH24423-PA 10..353 91..439 1258 66.9 Plus
Dgri\GH12602-PA 511 GH12602-PA 157..511 90..437 1000 55.3 Plus
Dgri\GH24172-PA 365 GH24172-PA 111..281 107..274 440 45.6 Plus
Dgri\GH12116-PA 918 GH12116-PA 183..347 110..274 440 48.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rbp9-PH 439 CG3151-PH 1..439 1..439 2243 100 Plus
Rbp9-PJ 684 CG3151-PJ 1..439 1..439 2243 100 Plus
Rbp9-PG 439 CG3151-PG 1..439 1..439 2243 100 Plus
Rbp9-PF 439 CG3151-PF 1..439 1..439 2243 100 Plus
Rbp9-PE 439 CG3151-PE 1..439 1..439 2243 100 Plus
Rbp9-PK 444 CG3151-PK 1..444 1..439 2227 98.9 Plus
Rbp9-PI 444 CG3151-PI 1..444 1..439 2227 98.9 Plus
Rbp9-PB 444 CG3151-PB 1..444 1..439 2227 98.9 Plus
Rbp9-PC 444 CG3151-PC 1..444 1..439 2227 98.9 Plus
fne-PJ 353 CG4396-PJ 10..353 95..439 1204 67.5 Plus
fne-PI 353 CG4396-PI 10..353 95..439 1204 67.5 Plus
fne-PD 353 CG4396-PD 10..353 95..439 1204 67.5 Plus
fne-PE 356 CG4396-PE 10..356 95..439 1201 66.9 Plus
fne-PH 356 CG4396-PH 10..356 95..439 1201 66.9 Plus
fne-PG 356 CG4396-PG 10..356 95..439 1201 66.9 Plus
fne-PB 356 CG4396-PB 10..356 95..439 1201 66.9 Plus
fne-PA 356 CG4396-PA 10..356 95..439 1201 66.9 Plus
fne-PC 356 CG4396-PC 10..356 95..439 1201 66.9 Plus
elav-PC 479 CG4262-PC 60..479 8..437 981 49.7 Plus
elav-PB 479 CG4262-PB 60..479 8..437 981 49.7 Plus
elav-PA 483 CG4262-PA 64..483 8..437 981 49.7 Plus
elav-PD 483 CG4262-PD 64..483 8..437 981 49.7 Plus
ssx-PE 443 CG3056-PE 7..290 8..309 450 34.2 Plus
ssx-PB 443 CG3056-PB 7..290 8..309 450 34.2 Plus
ssx-PD 485 CG3056-PD 7..290 8..309 450 34.2 Plus
Sxl-PR 342 CG43770-PR 23..286 18..281 449 34.8 Plus
Sxl-PC 344 CG43770-PC 23..286 18..281 449 34.8 Plus
Sxl-PN 344 CG43770-PN 23..286 18..281 449 34.8 Plus
Sxl-PO 364 CG43770-PO 23..286 18..281 449 34.8 Plus
Sxl-PW 344 CG43770-PW 25..288 18..281 446 34.5 Plus
Sxl-PJ 346 CG43770-PJ 25..288 18..281 446 34.5 Plus
Sxl-PG 346 CG43770-PG 25..288 18..281 446 34.5 Plus
Sxl-PH 366 CG43770-PH 25..288 18..281 446 34.5 Plus
Sxl-PX 722 CG43770-PX 25..288 18..281 446 34.5 Plus
Sxl-PE 314 CG43770-PE 33..256 58..281 438 37.9 Plus
Sxl-PA 314 CG43770-PA 33..256 58..281 438 37.9 Plus
Sxl-PAB 322 CG43770-PAB 41..264 58..281 438 37.9 Plus
Sxl-PAC 331 CG43770-PAC 50..273 58..281 438 37.9 Plus
Sxl-PP 352 CG43770-PP 73..296 58..281 438 37.9 Plus
Sxl-PT 354 CG43770-PT 73..296 58..281 438 37.9 Plus
Sxl-PD 354 CG43770-PD 73..296 58..281 438 37.9 Plus
Sxl-PL 354 CG43770-PL 73..296 58..281 438 37.9 Plus
Sxl-PY 708 CG43770-PY 73..296 58..281 438 37.9 Plus
shep-PA 578 CG32423-PA 116..395 4..282 330 29.5 Plus
CG5213-PA 251 CG5213-PA 40..221 109..290 325 36.3 Plus
shep-PB 499 CG32423-PB 21..309 4..282 321 29.8 Plus
shep-PD 499 CG32423-PD 21..309 4..282 321 29.8 Plus
shep-PF 590 CG32423-PF 182..407 49..282 319 31.2 Plus
shep-PH 371 CG32423-PH 4..194 95..282 286 35.8 Plus
shep-PI 377 CG32423-PI 4..194 95..282 286 35.8 Plus
shep-PE 379 CG32423-PE 4..196 95..282 283 35.1 Plus
Sxl-PP 352 CG43770-PP 4..193 84..264 156 29.5 Plus
Sxl-PT 354 CG43770-PT 4..193 84..264 156 29.5 Plus
Sxl-PD 354 CG43770-PD 4..193 84..264 156 29.5 Plus
Sxl-PL 354 CG43770-PL 4..193 84..264 156 29.5 Plus
Sxl-PY 708 CG43770-PY 4..193 84..264 156 29.5 Plus
Sxl-PW 344 CG43770-PW 4..185 84..264 155 29.3 Plus
Sxl-PJ 346 CG43770-PJ 4..185 84..264 155 29.3 Plus
Sxl-PG 346 CG43770-PG 4..185 84..264 155 29.3 Plus
Sxl-PH 366 CG43770-PH 4..185 84..264 155 29.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:18:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11879-PA 724 GI11879-PA 119..447 105..428 1642 97.9 Plus
Dmoj\GI16282-PA 353 GI16282-PA 10..353 91..439 1258 66.9 Plus
Dmoj\GI15436-PA 475 GI15436-PA 121..475 90..437 1003 55.3 Plus
Dmoj\GI21573-PA 367 GI21573-PA 89..281 82..274 435 41.5 Plus
Dmoj\GI16327-PA 716 GI16327-PA 250..411 110..274 421 49.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26299-PA 678 GL26299-PA 1..428 1..428 1678 84.6 Plus
Dper\GL22975-PA 385 GL22975-PA 23..385 107..439 1193 63.9 Plus
Dper\GL20165-PA 496 GL20165-PA 142..496 90..437 997 55 Plus
Dper\GL14245-PA 618 GL14245-PA 120..284 110..274 453 50.9 Plus
Dper\GL26885-PA 377 GL26885-PA 127..291 110..274 434 45.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28809-PA 692 GA28809-PA 1..442 1..428 1688 86 Plus
Dpse\GA22283-PA 353 GA22283-PA 10..353 91..439 1261 67.2 Plus
Dpse\GA18065-PA 496 GA18065-PA 142..496 90..437 996 55 Plus
Dpse\GA22715-PA 672 GA22715-PA 120..284 110..274 452 50.9 Plus
Dpse\GA22653-PA 377 GA22653-PA 127..291 110..274 434 45.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18380-PA 650 GM18380-PA 209..650 1..439 2209 97.1 Plus
Dsec\GM11591-PA 379 GM11591-PA 21..379 80..439 1267 65.6 Plus
Dsec\GM19036-PA 466 GM19036-PA 124..466 89..437 1021 56.8 Plus
Dsec\GM19131-PA 488 GM19131-PA 93..257 110..274 442 49.1 Plus
Dsec\Sxl-PA 301 GM17480-PA 111..281 107..274 435 45 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:18:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16475-PA 466 GD16475-PA 124..466 89..437 1021 56.8 Plus
Dsim\GD23195-PA 464 GD23195-PA 209..462 1..252 893 90.7 Plus
Dsim\GD17091-PA 371 GD17091-PA 25..263 109..340 772 62.8 Plus
Dsim\Sxl-PA 301 GD16165-PA 111..253 107..246 377 46.9 Plus
Dsim\GD16553-PA 226 GD16553-PA 93..226 110..243 366 50 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:18:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13991-PA 725 GJ13991-PA 1..425 1..428 1646 85.7 Plus
Dvir\GJ16518-PA 353 GJ16518-PA 10..353 91..439 1258 66.9 Plus
Dvir\elav-PA 516 GJ14725-PA 162..516 90..437 1002 55.3 Plus
Dvir\Sxl-PA 368 GJ16698-PA 69..282 60..274 442 39.5 Plus
Dvir\ssx-PA 428 GJ15667-PA 26..181 119..274 387 46.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14865-PA 725 GK14865-PA 116..444 105..428 1618 97.6 Plus
Dwil\GK25647-PA 353 GK25647-PA 10..353 91..439 1258 66.9 Plus
Dwil\GK16120-PA 509 GK16120-PA 155..509 90..437 1001 55.6 Plus
Dwil\GK16696-PA 508 GK16696-PA 81..276 79..274 449 44.4 Plus
Dwil\GK16445-PA 373 GK16445-PA 114..285 102..274 435 44.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18193-PA 446 GE18193-PA 1..446 1..439 2208 96.9 Plus
Dyak\fne-PA 353 GE17033-PA 10..353 91..439 1258 66.9 Plus
Dyak\GE16581-PA 478 GE16581-PA 123..478 89..437 996 54.9 Plus
Dyak\GE16683-PA 563 GE16683-PA 113..277 110..274 442 49.1 Plus
Dyak\GE17544-PA 335 GE17544-PA 79..249 107..274 436 45 Plus