Clone GH26447 Report

Search the DGRC for GH26447

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:264
Well:47
Vector:pOT2
Associated Gene/TranscriptGfrl-RK
Protein status:GH26447.pep: gold
Preliminary Size:2922
Sequenced Size:3114

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4335 2001-01-01 Release 2 assignment
CG17205 2001-01-01 Release 2 assignment
CG17208 2001-01-01 Release 2 assignment
CG17205 2003-01-01 Sim4 clustering to Release 3
CG34118 2008-04-29 Release 5.5 accounting
CG34118 2008-08-15 Release 5.9 accounting
CG34118 2008-12-18 5.12 accounting

Clone Sequence Records

GH26447.complete Sequence

3114 bp (3114 high quality bases) assembled on 2002-07-14

GenBank Submission: BT001445

> GH26447.complete
GTTACAGCAACCAAAACGCGAGGATAACTCAGACAGGATAACAATATCGT
GCGATCCTTCGACGAGGGTCGGTTGAATATAAATATAGAGGTGGCCCCAG
AGGCAAAAGCACGAAATAACCCCGTACCAAAGTGTTTAGAAAGTGCAAAA
GTGTGTGTTTGTGTGAGAGATAGATAGAGAGAGAGGGAGAAAGGAAGAGA
GTGGCATTATGGGCATTGCACGCAGTTTGAACTTGTGGCAAAGCCGCAAA
TGCAACGGCTAGTTGCGAATTCACAGCGTGCCACGGGCAATATACTGACA
CCTCCATCTCGTTCGGTCCCGATCCCGTACCCGCATCCGTTGCTGGTACC
CCGGTAAATCCGTGTCCATCGAAATAACCCGTAACCCGTAACCCGTTTCG
CATCCGTATTCCGTATTCCGTGTTCCGTGTTCGCGTCGCGGTTCGTTGAG
CTGGCAGGCCAAAACTGTCGGTTTAGTTGCGCCATCGCCATTATCTATAT
GCCAACATAGCAGAACTCGACTGAAGATTGCATCCCATATCCGCGGAACG
TGTCGCCATCGCCACCGCTAGCCATGTGAACTGTGAGGCAAACAATTTAA
AGTTGTAAAATTCAATTAATAACCAATGAACATAAATCCAAAAAGCAATT
AATGTGAACGAAGGAATTTAAATAAGTCCATAACTTTAACGATACATATC
AATGTTAGTCTGATTTTCCTTTAATACCATTAGCTTATTAAATACCCACA
TACACGTCGAAATATTAAAAGTGCTAAGATTCTTTAAAAATATCCAAGTT
TAAAGCATAGCCTAGAGCAATTAAATCGATTTGATATACTTAGAAAACAA
GTGAAGCGTTGAAAACGAGACCCGGTGGCAAAATAAACATTTAATTAAAT
CGACTGCGTGTGCAGAAGGATGCAATTTAATTGAATGGATATAAGGAATC
ACGCGAGTTTTCCTGAAAAAAAACGTCAAAAACACGCACATCCGTGTCGC
GCCAAAACGCTTTGTCATGTAATGTCTTTATGTCCTCAAGCGGATCAAGT
GCTTAGGCGATAAGGAAAAGCAGCTGGAGCGGCTGGCTCCTTTCCGGATT
TCCGGATTATATGCATAAATGAAAGCACGCATGCCCCGGCCGTAAGCCAA
AGTTTCAAGGGGCCTAGGATTCCATCGCACAGCGGATTAGCTGCAACATA
AAGCCATACACTAAGACACACGCACACACACACAAAAGTCCTGAATAGAG
GCAAAAACGCGAAGAAGCAGCAGGAAGCTGGGATTTGGTGCCCTCCATGA
CGTCAACTGTGTGTAAATGGGCAAGCAATTAAGCCGTTAACGATGTGCCC
GCTCTCAAAGGCGCCACGCAGGACCTCCAGGACCTCCACGAACTTCAGCA
CCACCCCGATCCAGAAAGCGATAGAACGCCAGATAGAGTCCTTTACGAGC
ACAAGCGAACCAATAAAAAATGCATTCAGTCGCGTTGCGTCCAATGTCGC
TGATTAATTCCAACTGAACAGTAGACAACGTCCGCTGATATCTGGATTCC
ATTTGTACTACAACCAATGACAACATGCTGAAACCATTCGCCGTGATTAT
CGGAATTTTTTATTTAGGTTCCACCATTAAGGGCGTCGTGGCCATTCTGA
ACTGTATCCTAGCACGTCAGCTATGCTTCGAGGATCCCTCATGTTCGGCC
ATTTTGGAAATAATACCTCGCGTCTGCGGACCCATTCCAGTGTCCTGCAG
CACGGTGACGGTGACCAAGTGTCAGGCTGCCCTGCGCACCCTGCAGGCCT
TCCAGTTCTTTCGGCCCACCTGCCTGTGCAAGGAGCCCGGAATGGATCCG
GACTGCAATCACTTTCGGGACTTTCTCTTCGATCATCCATGCGGATTTGT
GCTGAAGAAAGCCGAAAAGGATCCGTACCCCATTGATGCCCTACCAACTT
GCAACCATGCACTTTCCGTCTGCCAACAGGAACGCAAATGTCTAAAGCTC
TTCGAGGACTTCAAAACGCATTGCAAAGTGCGCGACAACAAATGCAAAAT
GGAAAACAGGGACGCCTGCCACGACTCCTGGACCAACCTGCGTCTGTCGC
CCATGTTCGGATGCATCTGCCCGAACAACCATATGAAAAAGCGCTGTGAT
CGTATCTTTAATATTGTTAATCACAATCCTTGCGTGGGTAAGTTTCGACT
GGCGATGCTGAACTGTTGACCGTGACTTCAGAAACAACTATAACAACCAA
TAACAACTACAACAAGCAACAACACATACAGCTGAAAGTAAAAACAAAAA
GCAAATGCTTTGAAAATCGTGGATAAACCATATAGATTTTATTTTCATTG
TCCTCTGTTCTTATGTGTCTCTATTTCTCTGTCAACCCTATGGTATTCAA
AACGATGATCACCTTTACCTGCCTATAACGAAACTGATTTGGTTCGTTCT
TAACTGAATTTTGAGTTGATTTTTCGTTCGTTGGATTCATTTGGTTATTG
TAATTTTGTGAAACGCTCAAACCCGAAACTAGCCTAACCATTTAAGTAAC
CTAAACAAATACCAGAAACTAAAATATCGCACGCTTCTGCATCAAAAACC
AACTAGAGAAAACCCAAAAATGAAACCCATGTTCTGCGATCAGTAAACAG
TAATCAATATGCCTATATCCAATATATATCATACTGTACGAACATTAGCA
ATGCTATCAGTAATCCTAAATATCACGTATACGAATGTATATCAATGTAA
ACCAAAGCTGCCGTGCTATCTCTTTCTACCTCTCTCTCTCTCTCTCTCTC
TCTACCTCTCTCTTTCTCTATCTGTCACTTAAAAAAGTTTGTTGTAGCTG
TAAGCTATCAGCCCATTAAACATACTCGTCACTCGCTAAAGTTAACTGCC
ACCCAGCGAACTGAGTCCGTGCTTTAGATTGATTGCACCCAAGAACACTA
TATCTAGAAATTACTATCTCTCTAACCGTAGATATAAGACTATCGCTAGA
TCAAGCTATACTAACAACAATCATTCAATGTGCAGGACTAGGGCTAGCAT
ATTAACATCGCTCAGTTGAAAGCTTTGATTTGAAACCCACGCCAGACCAC
CGAAAAAAAAAAAA

GH26447.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:43:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG34118-RA 3181 CG34118-RA 66..3178 1..3113 15550 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 15:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16224217..16225266 3102..2057 5080 99.1 Minus
chr3R 27901430 chr3R 16304666..16305607 1513..576 4525 98.9 Minus
chr3R 27901430 chr3R 16307938..16308514 577..1 2885 100 Minus
chr3R 27901430 chr3R 16227181..16227354 1911..1738 870 100 Minus
chr3R 27901430 chr3R 16226969..16227119 2060..1910 755 100 Minus
chr3R 27901430 chr3R 16235040..16235164 1740..1616 625 100 Minus
chr3R 27901430 chr3R 16288965..16289077 1619..1507 535 98.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:09:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 15:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20400253..20401309 3113..2057 5270 99.9 Minus
3R 32079331 3R 20480693..20481630 1513..576 4690 100 Minus
3R 32079331 3R 20483975..20484551 577..1 2885 100 Minus
3R 32079331 3R 20403224..20403397 1911..1738 870 100 Minus
3R 32079331 3R 20403012..20403162 2060..1910 755 100 Minus
3R 32079331 3R 20411082..20411206 1740..1616 625 100 Minus
3R 32079331 3R 20465005..20465117 1619..1507 535 98.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20141084..20142140 3113..2057 5270 99.9 Minus
3R 31820162 3R 20221524..20222461 1513..576 4690 100 Minus
3R 31820162 3R 20224806..20225382 577..1 2885 100 Minus
3R 31820162 3R 20144055..20144228 1911..1738 870 100 Minus
3R 31820162 3R 20143843..20143993 2060..1910 755 100 Minus
3R 31820162 3R 20151913..20152037 1740..1616 625 100 Minus
3R 31820162 3R 20205836..20205948 1619..1507 535 98.2 Minus
Blast to na_te.dros performed on 2019-03-16 15:29:13 has no hits.

GH26447.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 15:30:20 Download gff for GH26447.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16224217..16224495 2824..3102 99 == Minus
chr3R 16224555..16225263 2060..2768 93 <- Minus
chr3R 16226970..16227117 1912..2059 100 <- Minus
chr3R 16227181..16227351 1741..1911 100 <- Minus
chr3R 16235040..16235162 1618..1740 100 <- Minus
chr3R 16288967..16289070 1514..1617 100 <- Minus
chr3R 16304666..16305607 576..1513 98 <- Minus
chr3R 16307940..16308514 1..575 93   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:58:01 Download gff for GH26447.complete
Subject Subject Range Query Range Percent Splice Strand
CG34118-RA 1..645 1575..2219 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:16:32 Download gff for GH26447.complete
Subject Subject Range Query Range Percent Splice Strand
CG42801-RC 1..645 1575..2219 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 16:46:12 Download gff for GH26447.complete
Subject Subject Range Query Range Percent Splice Strand
Gfrl-RK 1..645 1575..2219 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:07:47 Download gff for GH26447.complete
Subject Subject Range Query Range Percent Splice Strand
CG34118-RA 1..645 1575..2219 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:47:01 Download gff for GH26447.complete
Subject Subject Range Query Range Percent Splice Strand
Gfrl-RK 1..645 1575..2219 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:58:01 Download gff for GH26447.complete
Subject Subject Range Query Range Percent Splice Strand
CG34118-RA 1..3102 1..3102 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:16:32 Download gff for GH26447.complete
Subject Subject Range Query Range Percent Splice Strand
CG42801-RC 1..3102 1..3102 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:46:12 Download gff for GH26447.complete
Subject Subject Range Query Range Percent Splice Strand
Gfrl-RK 38..3139 1..3102 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:07:47 Download gff for GH26447.complete
Subject Subject Range Query Range Percent Splice Strand
CG34118-RA 1..3102 1..3102 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:47:01 Download gff for GH26447.complete
Subject Subject Range Query Range Percent Splice Strand
Gfrl-RK 38..3139 1..3102 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:30:20 Download gff for GH26447.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20403013..20403160 1912..2059 100 <- Minus
3R 20403224..20403394 1741..1911 100 <- Minus
3R 20411082..20411204 1618..1740 100 <- Minus
3R 20465007..20465110 1514..1617 100 <- Minus
3R 20400264..20401306 2060..3102 100 <- Minus
3R 20480693..20481630 576..1513 100 <- Minus
3R 20483977..20484551 1..575 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:30:20 Download gff for GH26447.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20403013..20403160 1912..2059 100 <- Minus
3R 20403224..20403394 1741..1911 100 <- Minus
3R 20411082..20411204 1618..1740 100 <- Minus
3R 20465007..20465110 1514..1617 100 <- Minus
3R 20400264..20401306 2060..3102 100 <- Minus
3R 20480693..20481630 576..1513 100 <- Minus
3R 20483977..20484551 1..575 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 15:30:20 Download gff for GH26447.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20403013..20403160 1912..2059 100 <- Minus
3R 20403224..20403394 1741..1911 100 <- Minus
3R 20411082..20411204 1618..1740 100 <- Minus
3R 20465007..20465110 1514..1617 100 <- Minus
3R 20400264..20401306 2060..3102 100 <- Minus
3R 20480693..20481630 576..1513 100 <- Minus
3R 20483977..20484551 1..575 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:46:12 Download gff for GH26447.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16225986..16227028 2060..3102 100 <- Minus
arm_3R 16228735..16228882 1912..2059 100 <- Minus
arm_3R 16228946..16229116 1741..1911 100 <- Minus
arm_3R 16236804..16236926 1618..1740 100 <- Minus
arm_3R 16290729..16290832 1514..1617 100 <- Minus
arm_3R 16306415..16307352 576..1513 100 <- Minus
arm_3R 16309699..16310273 1..575 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:39:34 Download gff for GH26447.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20141095..20142137 2060..3102 100 <- Minus
3R 20143844..20143991 1912..2059 100 <- Minus
3R 20144055..20144225 1741..1911 100 <- Minus
3R 20151913..20152035 1618..1740 100 <- Minus
3R 20205838..20205941 1514..1617 100 <- Minus
3R 20221524..20222461 576..1513 100 <- Minus
3R 20224808..20225382 1..575 100   Minus

GH26447.hyp Sequence

Translation from 1574 to 2218

> GH26447.hyp
MLKPFAVIIGIFYLGSTIKGVVAILNCILARQLCFEDPSCSAILEIIPRV
CGPIPVSCSTVTVTKCQAALRTLQAFQFFRPTCLCKEPGMDPDCNHFRDF
LFDHPCGFVLKKAEKDPYPIDALPTCNHALSVCQQERKCLKLFEDFKTHC
KVRDNKCKMENRDACHDSWTNLRLSPMFGCICPNNHMKKRCDRIFNIVNH
NPCVGKFRLAMLNC*

GH26447.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Gfrl-PK 214 CG43224-PK 1..214 1..214 1197 100 Plus
Gfrl-PF 864 CG43224-PF 1..205 1..205 1149 100 Plus
Gfrl-PH 1101 CG43224-PH 1..206 1..206 1144 99 Plus
Gfrl-PJ 1212 CG43224-PJ 1..206 1..206 1144 99 Plus
Gfrl-PG 1212 CG43224-PG 1..206 1..206 1144 99 Plus

GH26447.pep Sequence

Translation from 1574 to 2218

> GH26447.pep
MLKPFAVIIGIFYLGSTIKGVVAILNCILARQLCFEDPSCSAILEIIPRV
CGPIPVSCSTVTVTKCQAALRTLQAFQFFRPTCLCKEPGMDPDCNHFRDF
LFDHPCGFVLKKAEKDPYPIDALPTCNHALSVCQQERKCLKLFEDFKTHC
KVRDNKCKMENRDACHDSWTNLRLSPMFGCICPNNHMKKRCDRIFNIVNH
NPCVGKFRLAMLNC*

GH26447.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 04:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23210-PA 732 GF23210-PA 359..510 56..207 825 97.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 04:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15490-PA 279 GG15490-PA 7..52 162..207 248 93.5 Plus
Dere\GG15468-PA 124 GG15468-PA 76..122 9..55 211 89.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 04:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14172-PA 346 GH14172-PA 1..118 90..207 643 96.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:45
Subject Length Description Subject Range Query Range Score Percent Strand
Gfrl-PK 214 CG43224-PK 1..214 1..214 1197 100 Plus
Gfrl-PF 864 CG43224-PF 1..205 1..205 1149 100 Plus
Gfrl-PH 1101 CG43224-PH 1..206 1..206 1144 99 Plus
Gfrl-PJ 1212 CG43224-PJ 1..206 1..206 1144 99 Plus
Gfrl-PG 1212 CG43224-PG 1..206 1..206 1144 99 Plus
Gfrl-PN 1212 CG43224-PN 1..206 1..206 1144 99 Plus
Gfrl-PL 1217 CG43224-PL 1..206 1..206 1144 99 Plus
Gfrl-PI 1168 CG43224-PI 82..273 15..206 1074 99 Plus
Gfrl-PE 1279 CG43224-PE 82..273 15..206 1074 99 Plus
Gfrl-PM 1042 CG43224-PM 82..271 15..204 1073 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 04:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10545-PA 380 GI10545-PA 1..118 90..207 644 96.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 04:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24094-PA 323 GL24094-PA 12..163 56..207 808 97.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 04:23:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA30155-PB 1183 GA30155-PB 77..280 9..207 1048 95.1 Plus
Dpse\GA30155-PA 1338 GA30155-PA 77..280 9..207 1048 95.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 04:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23195-PA 274 GM23195-PA 7..52 162..207 249 93.5 Plus
Dsec\GM23193-PA 154 GM23193-PA 82..129 15..62 212 89.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 04:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20069-PA 274 GD20069-PA 7..52 162..207 249 93.5 Plus
Dsim\GD20067-PA 62 GD20067-PA 3..50 15..62 210 89.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 04:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24199-PA 405 GJ24199-PA 20..171 56..207 819 97.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 04:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22733-PA 301 GK22733-PA 29..85 56..112 314 98.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 04:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25078-PA 272 GE25078-PA 7..52 162..207 247 93.5 Plus
Dyak\GE25076-PA 126 GE25076-PA 76..122 9..55 211 89.4 Plus