Clone GH26459 Report

Search the DGRC for GH26459

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:264
Well:59
Vector:pOT2
Associated Gene/TranscriptCG5989-RA
Protein status:GH26459.pep: gold
Preliminary Size:1710
Sequenced Size:1566

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5989 2001-01-01 Release 2 assignment
CG5989 2001-11-08 Blastp of sequenced clone
CG5989 2003-01-01 Sim4 clustering to Release 3
CG5989 2008-04-29 Release 5.5 accounting
CG5989 2008-08-15 Release 5.9 accounting
CG5989 2008-12-18 5.12 accounting

Clone Sequence Records

GH26459.complete Sequence

1566 bp (1566 high quality bases) assembled on 2001-11-08

GenBank Submission: AY069218

> GH26459.complete
CTGTTCAAATCGAGTAAATCGTAATTGCTCCTTGAATTTTTTTTATTTTT
GTGGGCAACTCCTGCATTGGAGTCGGCGGTTGCGTAATAACGCGCCTCTT
CCTGGTTTCTGGCTGCCACTTGGAGTTACAGTATGGCGTTGGCGCTGCGC
GTTGCCCGATGCGCCGCGATTCCGGCCAACTGTTGGCCCCGCGATCGCCG
GCGACTGTTACACCTGTGCAGCAGCGCCAGCGATAAGAGGCCAACAGCTT
TCTGCAGCAGGAACTACGCAACGAAGCCCGAAGCAGCGGTTCCACCACAA
ATCAAGCGAAATGTGGCCGCCGAGATAACCAGCGTGGGTAAGGTCATCTA
CGAAACGGGCTGGGATGCCAACAAGCCCATTGAAAAGCCAAAGGTCCGGC
CCAGCAGCTCGTCGTCCACACAGCCGACGCCGTCTAAGAAACCCGAAGAC
GAGAAGCGCAAGGAGCTGGACACTGTGAAATCGAAACGGGATCAGATGCG
AGACAATATGCAGGACTACATATTCACCCGGTACTTCAACTATGTGAAGA
ACTACGACAAAGTGCTCGAAAAGAACTTCCCCAAGGCCATGCAGTTGTAC
AGGGTGTTCTTCGATGGCGTCAAGGACTTTTTTGGCGACATGAAACGTTT
CCTCAAGATTGCCCGCATTGCCAATGATTCGCCTCAAGGCATAAGAGCTT
TGAATCGCCAGGAGCTGGAGCTGTACATGCAGATGCCAAGGGACATGATG
AAGGTGGCACCAGCTCTGATCGGCTGCTCCCTGCCCATGGTGGGCTATGC
GTTCTTTCCCCTCGTCTTTTATTACCCCCGCTCCTTTCTCACTGCCCATT
TCTGGACTCCGCAGCAGCGCTCCGAGTTCCAGAGCTACTACATGAAGCGG
CGATTATGCAATAACAAGGACGTCTTTCGCTGCCTGCAGGACAAGCTCAA
AGCGACGGCATCGCATCCCAAGCACTCGGCTTTTGCTGACATCCTGGGCC
AGCTGGGCAGCGGCACACACCCCACGCCTGAGATGCTCATCGATGTCAAA
GACATATTCGCCGAAGGACCATATTCCCTGCTGGGAATGTCGCGGAAGCA
CGTTAGAAACCTAGTCAACCTTCATGGACTGCCCAGTAGCATCTTCAAGC
GACATCGGCTCCACGAGCACGCCTTCCTGGTGCACTACATGGACCAGGCC
ATAACCCGCGAGGGTGGCGTTCACAACCTGACACCGGATGCTTTGCGCTA
CTCCTGCTATCTGCGCGGATTGAATCCCGACAGCCTGAGCAGCGAGGCCA
TGATCGAGTGGCTGCGGAAGTGGGTCAAGGTGTCCACGTCGATACAAGGC
GAACATATCACGCTGTTCCTGCACTTGCCCATCCTGCTGGGCTACAACCA
TCCCAACAACTGGAAGACCATCTACGGCAAGTGCCCCACTTGAGCGGGGT
CCTCTGGTCGTTAGCTATTTGGTAGACTGTGCTTTAAAGATTGGACTGTT
AAGATCATTTTGTTTCTTGAGAGCAAATAAAACCGTTAAACCAAAAGAAA
AAAAAAAAAAAAAAAA

GH26459.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:00:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG5989.d 1807 CG5989.d 261..1807 1..1547 7735 100 Plus
CG5989-RA 1593 CG5989-RA 47..1593 1..1547 7735 100 Plus
CG5989.c 1553 CG5989.c 17..1120 1..1104 5520 100 Plus
CG5989.c 1553 CG5989.c 1121..1553 1115..1547 2165 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8595287..8595880 815..222 2910 99.3 Minus
chr3L 24539361 chr3L 8594433..8594875 1547..1105 2170 99.3 Minus
chr3L 24539361 chr3L 8594937..8595225 1104..816 1415 99.3 Minus
chr3L 24539361 chr3L 8595928..8596150 224..1 995 97.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:09:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8603265..8603858 815..222 2970 100 Minus
3L 28110227 3L 8602408..8602853 1550..1105 2230 100 Minus
3L 28110227 3L 8602915..8603203 1104..816 1445 100 Minus
3L 28110227 3L 8603906..8604129 224..1 1120 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8596365..8596958 815..222 2970 100 Minus
3L 28103327 3L 8595508..8595953 1550..1105 2230 100 Minus
3L 28103327 3L 8596015..8596303 1104..816 1445 100 Minus
3L 28103327 3L 8597006..8597229 224..1 1120 100 Minus
Blast to na_te.dros performed on 2019-03-15 17:21:45 has no hits.

GH26459.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:22:50 Download gff for GH26459.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8594937..8595225 816..1104 99 <- Minus
chr3L 8594433..8594875 1105..1547 99 <- Minus
chr3L 8595287..8595877 225..815 99 <- Minus
chr3L 8595928..8596150 1..224 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:57:25 Download gff for GH26459.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 1..1311 133..1443 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:34:12 Download gff for GH26459.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 1..1311 133..1443 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:33:03 Download gff for GH26459.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 1..1311 133..1443 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:01:48 Download gff for GH26459.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 1..1311 133..1443 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:34:36 Download gff for GH26459.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 1..1311 133..1443 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:13:35 Download gff for GH26459.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 17..1563 1..1547 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:34:12 Download gff for GH26459.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 17..1563 1..1547 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:33:03 Download gff for GH26459.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 21..1567 1..1547 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:01:48 Download gff for GH26459.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 17..1563 1..1547 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:34:36 Download gff for GH26459.complete
Subject Subject Range Query Range Percent Splice Strand
CG5989-RA 21..1567 1..1547 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:22:50 Download gff for GH26459.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8602411..8602853 1105..1547 100 <- Minus
3L 8602915..8603203 816..1104 100 <- Minus
3L 8603265..8603855 225..815 100 <- Minus
3L 8603906..8604129 1..224 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:22:50 Download gff for GH26459.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8602411..8602853 1105..1547 100 <- Minus
3L 8602915..8603203 816..1104 100 <- Minus
3L 8603265..8603855 225..815 100 <- Minus
3L 8603906..8604129 1..224 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:22:50 Download gff for GH26459.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8602411..8602853 1105..1547 100 <- Minus
3L 8602915..8603203 816..1104 100 <- Minus
3L 8603265..8603855 225..815 100 <- Minus
3L 8603906..8604129 1..224 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:33:03 Download gff for GH26459.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8595511..8595953 1105..1547 100 <- Minus
arm_3L 8596015..8596303 816..1104 100 <- Minus
arm_3L 8596365..8596955 225..815 100 <- Minus
arm_3L 8597006..8597229 1..224 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:38:42 Download gff for GH26459.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8595511..8595953 1105..1547 100 <- Minus
3L 8596015..8596303 816..1104 100 <- Minus
3L 8596365..8596955 225..815 100 <- Minus
3L 8597006..8597229 1..224 100   Minus

GH26459.pep Sequence

Translation from 132 to 1442

> GH26459.pep
MALALRVARCAAIPANCWPRDRRRLLHLCSSASDKRPTAFCSRNYATKPE
AAVPPQIKRNVAAEITSVGKVIYETGWDANKPIEKPKVRPSSSSSTQPTP
SKKPEDEKRKELDTVKSKRDQMRDNMQDYIFTRYFNYVKNYDKVLEKNFP
KAMQLYRVFFDGVKDFFGDMKRFLKIARIANDSPQGIRALNRQELELYMQ
MPRDMMKVAPALIGCSLPMVGYAFFPLVFYYPRSFLTAHFWTPQQRSEFQ
SYYMKRRLCNNKDVFRCLQDKLKATASHPKHSAFADILGQLGSGTHPTPE
MLIDVKDIFAEGPYSLLGMSRKHVRNLVNLHGLPSSIFKRHRLHEHAFLV
HYMDQAITREGGVHNLTPDALRYSCYLRGLNPDSLSSEAMIEWLRKWVKV
STSIQGEHITLFLHLPILLGYNHPNNWKTIYGKCPT*

GH26459.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:26:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10156-PA 434 GF10156-PA 1..431 1..433 1888 82.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15069-PA 382 GG15069-PA 1..380 1..382 1895 93.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:27:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16148-PA 460 GH16148-PA 1..457 1..433 1674 70.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG5989-PA 436 CG5989-PA 1..436 1..436 2333 100 Plus
CG5989-PB 434 CG5989-PB 1..434 1..436 2312 99.5 Plus
CG5989-PC 425 CG5989-PC 1..425 1..436 2252 97.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12418-PA 455 GI12418-PA 1..450 1..431 1584 69.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:27:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10296-PA 446 GL10296-PA 1..443 1..433 1788 76.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:27:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19280-PA 446 GA19280-PA 1..443 1..433 1788 76.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24926-PA 434 GM24926-PA 1..434 1..436 2264 95.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:27:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12974-PA 436 GD12974-PA 1..436 1..436 2329 98.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:27:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12311-PA 448 GJ12311-PA 1..445 1..433 1705 74.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25606-PA 452 GK25606-PA 1..448 1..433 1690 73 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:27:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21293-PA 434 GE21293-PA 1..434 1..436 2197 94.3 Plus

GH26459.hyp Sequence

Translation from 132 to 1442

> GH26459.hyp
MALALRVARCAAIPANCWPRDRRRLLHLCSSASDKRPTAFCSRNYATKPE
AAVPPQIKRNVAAEITSVGKVIYETGWDANKPIEKPKVRPSSSSSTQPTP
SKKPEDEKRKELDTVKSKRDQMRDNMQDYIFTRYFNYVKNYDKVLEKNFP
KAMQLYRVFFDGVKDFFGDMKRFLKIARIANDSPQGIRALNRQELELYMQ
MPRDMMKVAPALIGCSLPMVGYAFFPLVFYYPRSFLTAHFWTPQQRSEFQ
SYYMKRRLCNNKDVFRCLQDKLKATASHPKHSAFADILGQLGSGTHPTPE
MLIDVKDIFAEGPYSLLGMSRKHVRNLVNLHGLPSSIFKRHRLHEHAFLV
HYMDQAITREGGVHNLTPDALRYSCYLRGLNPDSLSSEAMIEWLRKWVKV
STSIQGEHITLFLHLPILLGYNHPNNWKTIYGKCPT*

GH26459.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:35:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG5989-PA 436 CG5989-PA 1..436 1..436 2333 100 Plus
CG5989-PB 434 CG5989-PB 1..434 1..436 2312 99.5 Plus
CG5989-PC 425 CG5989-PC 1..425 1..436 2252 97.5 Plus