Clone GH26602 Report

Search the DGRC for GH26602

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:266
Well:2
Vector:pOT2
Associated Gene/TranscriptCG7488-RA
Protein status:GH26602.pep: gold
Sequenced Size:1201

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7488 2008-04-29 Release 5.5 accounting
CG7488 2008-04-29 Picked prior to 5.5
CG7488 2008-08-15 Release 5.9 accounting
CG7488 2008-12-18 5.12 accounting

Clone Sequence Records

GH26602.complete Sequence

1201 bp assembled on 2007-11-15

GenBank Submission: BT031201

> GH26602.complete
AATATGCGCTATAATCTGTTAGCCAGTTCGTTAAAATTGCTGAATAGCAC
GAAAACCCACAATTTGTTCTTGGTGAACGTGCGCAGCTTGACCGGCGCCG
CCCACACCAACGATGCAGTGGCTCCGACCACGCGCCCACCGCCCGCAGAA
TCGAGGAATCCCGGAGAGGAGCAACGATCACTGCACATCGCGGTAATTGG
AGTGCCCAATGTGGGAAAGAGCACGTTCATCAACAACACGGTGAACCACC
GAGTGTGTCCCACCTCGGCCAAGGTGCACACCACTCGGCAGTCGAACACG
GCCATTTACACCACCGGCCAGACGCAGTTGGTCTTTTACGATACGCCGGG
CCTGGTCACGCAACATGAGATTCGTCGGCACCACCTGGACCAGAACTTTA
AGAGTGCCTACCGCCATGCCATACAGCATGCGGACATCATCGCCGTGGTG
CACGATGCCTCAAATGCCTGGACTAGGAAGGAACTGCATCCCACTGTCTT
GGATACGCTGAAGGCGTATAGCAACCTGCCCAGTTTCCTGGTGCTGAATA
AGATAGACGCCCTGAAGTCGAAGCGTTTGCTGTTGGATCTGATCAAGACA
CTCACCAACGACACCTTGACAGTTGGCAAGCGGGAAGTCCAGGCAAAAAG
TGCTCTCGCCAAGGAAATAAGAATCAACAAGCGGGAGTCTAGCTGGAGCC
ATTTTAGCGACGTGTTTCTTGTTTCCGCCTTGACCGGCAATGGGCTGCAG
GAGATGCAGAACTACCTGGTGGGCCAGGCTAAGCCCAGGGATTGGAAATA
CCCAGCTGACATTCATACGGACTCCAGCCCAGAAGCATTAATTGTGGAGA
GTGTGCGGGCTCGTCTGCTGGACTACTTGCCGCAGGAGATACCCTACAAC
CTTAAGTGCGAGATCGAGTACTACAGTGTGGAAAAAAATGTTGTCTACAC
ATCCGTGCAGGTTCAGTGCCCCACCACGCGAATCGAGCGCCTAATCTGTG
GCGAGGGTAATGGCAAGCTGCGGCAGATCACGGAGCGAGTTACATCAGAC
CTGGTGGAGATGTTCGGCCAAGCAGTGTCCCTTACTATATCTACAGTTTC
CAAGGGCAAGAAGACCGCCGCTTGAGCACTTGTTGATTACTTGTACTTTA
TTTGTAACGTTGCATAAACCTAAGAGTTCACAAAAAAAAAAAAAAAAAAA
A

GH26602.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:33:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7488-RA 1346 CG7488-RA 108..1292 1..1185 5925 100 Plus
CG17327-RB 700 CG17327-RB 639..700 1185..1124 310 100 Minus
CG17327.a 741 CG17327.a 680..741 1185..1124 310 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:07:31
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8820945..8821881 1..937 4625 99.6 Plus
chr3R 27901430 chr3R 8821939..8822182 938..1181 1220 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:09:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12995688..12996624 1..937 4685 100 Plus
3R 32079331 3R 12996682..12996929 938..1185 1240 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:29:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12736519..12737455 1..937 4685 100 Plus
3R 31820162 3R 12737513..12737760 938..1185 1240 100 Plus
Blast to na_te.dros performed on 2019-03-16 13:07:30 has no hits.

GH26602.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:08:08 Download gff for GH26602.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8820945..8821881 1..937 99 -> Plus
chr3R 8821939..8822182 938..1181 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:57:37 Download gff for GH26602.complete
Subject Subject Range Query Range Percent Splice Strand
CG7488-RA 1..1122 4..1125 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 14:02:16 Download gff for GH26602.complete
Subject Subject Range Query Range Percent Splice Strand
CG7488-RA 1..1122 4..1125 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:46:32 Download gff for GH26602.complete
Subject Subject Range Query Range Percent Splice Strand
CG7488-RA 1..1122 4..1125 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:47:36 Download gff for GH26602.complete
Subject Subject Range Query Range Percent Splice Strand
CG7488-RA 1..1122 4..1125 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:09:48 Download gff for GH26602.complete
Subject Subject Range Query Range Percent Splice Strand
CG7488-RA 1..1122 4..1125 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 16:48:10 Download gff for GH26602.complete
Subject Subject Range Query Range Percent Splice Strand
CG7488-RA 34..1214 1..1181 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 14:02:16 Download gff for GH26602.complete
Subject Subject Range Query Range Percent Splice Strand
CG7488-RA 42..1222 1..1181 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:46:32 Download gff for GH26602.complete
Subject Subject Range Query Range Percent Splice Strand
CG7488-RA 69..1249 1..1181 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:47:36 Download gff for GH26602.complete
Subject Subject Range Query Range Percent Splice Strand
CG7488-RA 34..1214 1..1181 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:09:48 Download gff for GH26602.complete
Subject Subject Range Query Range Percent Splice Strand
CG7488-RA 69..1249 1..1181 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:08:08 Download gff for GH26602.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12995688..12996624 1..937 100 -> Plus
3R 12996682..12996925 938..1181 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:08:08 Download gff for GH26602.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12995688..12996624 1..937 100 -> Plus
3R 12996682..12996925 938..1181 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:08:08 Download gff for GH26602.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12995688..12996624 1..937 100 -> Plus
3R 12996682..12996925 938..1181 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:46:32 Download gff for GH26602.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8821410..8822346 1..937 100 -> Plus
arm_3R 8822404..8822647 938..1181 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:54:13 Download gff for GH26602.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12737513..12737756 938..1181 100   Plus
3R 12736519..12737455 1..937 100 -> Plus

GH26602.hyp Sequence

Translation from 0 to 1124

> GH26602.hyp
NMRYNLLASSLKLLNSTKTHNLFLVNVRSLTGAAHTNDAVAPTTRPPPAE
SRNPGEEQRSLHIAVIGVPNVGKSTFINNTVNHRVCPTSAKVHTTRQSNT
AIYTTGQTQLVFYDTPGLVTQHEIRRHHLDQNFKSAYRHAIQHADIIAVV
HDASNAWTRKELHPTVLDTLKAYSNLPSFLVLNKIDALKSKRLLLDLIKT
LTNDTLTVGKREVQAKSALAKEIRINKRESSWSHFSDVFLVSALTGNGLQ
EMQNYLVGQAKPRDWKYPADIHTDSSPEALIVESVRARLLDYLPQEIPYN
LKCEIEYYSVEKNVVYTSVQVQCPTTRIERLICGEGNGKLRQITERVTSD
LVEMFGQAVSLTISTVSKGKKTAA*

GH26602.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG7488-PA 373 CG7488-PA 1..373 2..374 1910 100 Plus

GH26602.pep Sequence

Translation from 3 to 1124

> GH26602.pep
MRYNLLASSLKLLNSTKTHNLFLVNVRSLTGAAHTNDAVAPTTRPPPAES
RNPGEEQRSLHIAVIGVPNVGKSTFINNTVNHRVCPTSAKVHTTRQSNTA
IYTTGQTQLVFYDTPGLVTQHEIRRHHLDQNFKSAYRHAIQHADIIAVVH
DASNAWTRKELHPTVLDTLKAYSNLPSFLVLNKIDALKSKRLLLDLIKTL
TNDTLTVGKREVQAKSALAKEIRINKRESSWSHFSDVFLVSALTGNGLQE
MQNYLVGQAKPRDWKYPADIHTDSSPEALIVESVRARLLDYLPQEIPYNL
KCEIEYYSVEKNVVYTSVQVQCPTTRIERLICGEGNGKLRQITERVTSDL
VEMFGQAVSLTISTVSKGKKTAA*

GH26602.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 01:10:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11042-PA 381 GF11042-PA 1..377 1..373 1524 74.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 01:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19324-PA 373 GG19324-PA 1..373 1..373 1889 94.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 01:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20928-PA 381 GH20928-PA 1..379 1..370 1415 70.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7488-PA 373 CG7488-PA 1..373 1..373 1910 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 01:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18366-PA 379 GI18366-PA 1..379 1..372 1403 69.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 01:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11028-PA 381 GL11028-PA 1..381 1..369 1477 73.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 01:10:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24581-PA 381 GA24581-PA 1..381 1..369 1478 73.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 01:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24072-PA 373 GM24072-PA 1..373 1..373 1931 96.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 01:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18869-PA 373 GD18869-PA 1..373 1..373 1949 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 01:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21437-PA 382 GJ21437-PA 1..382 1..372 1428 72.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 01:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21326-PA 382 GK21326-PA 1..381 5..371 1453 72.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 01:10:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26231-PA 373 GE26231-PA 1..373 1..373 1925 96 Plus