Clone GH26622 Report

Search the DGRC for GH26622

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:266
Well:22
Vector:pOT2
Associated Gene/TranscriptNmda1-RF
Protein status:GH26622.pep: gold
Preliminary Size:2035
Sequenced Size:2073

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3798 2001-01-01 Release 2 assignment
CG3798 2001-09-19 Blastp of sequenced clone
CG3798 2003-01-01 Sim4 clustering to Release 3
Nmda1 2008-04-29 Release 5.5 accounting
Nmda1 2008-08-15 Release 5.9 accounting
Nmda1 2008-12-18 5.12 accounting

Clone Sequence Records

GH26622.complete Sequence

2073 bp (2073 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060346

> GH26622.complete
ACAACATTCAATTGTTTGTTTTGATCAAATAGCAACGTAATCCAGAGGTA
AAACAACAACGAAACAATGCAAGGTGAGTGGAATAAGGACAAGCCGTACT
AACACATTCTTTTTGGATCTAAGTTTACTCCACAGCGGTTTCGGAATTAC
ATAGAAATCAGAGCGAAGTCCCTCGAGAATGTCCTGGCAAAGTGTTCCCC
AGTATCCCCAATACCAAGGTTCAATCTTCTTAACTTCTAAGCGAGTGTTA
CAGCTTACCCGTTTTCTGATCGCATGCTTTTGTTCGTCCCGGGGCTTGTC
GACCCGTTGAATGCTCAGTAATTGCCCAGAGCTGATTCATTTCCATTACC
TCTCTCTCTTTACACATCGTACTTGTCCCTTCTTATCATGGTTGTATGTA
CATATTTGCTCGAGATTGTTTCTTGGTTTACCGCATCTCTTCGTCACGGC
GAAGCGTTTCATTTAGATTTTACAGTTCTTGGTAGACAGATTGCTGTAGC
GAACGCGTTGGTAGCACCGTTTTAGATGACAAACTAAAACGAGATGTCTT
ATTTCGCAGATCCCAACCAGCAGTACAACTATGGCGGCGGTAATCCCCCG
CAGGGAGGATATGGTGGATATCCACCTCAGGGCGGCTATCCACCTCAAGG
ACCGCCGCAAGGCTACCCACCCTATGCACAAGGAGGTGCTCAACCCTATC
CACAGCCCTACGGACAGGGGCCTCCACCGGGAGGTTATGCTCCCCAGCCG
GGATTTATCCAACCACCACCATCTGCTGGCGGCTACGGAGCCTACGATGA
TCCGGAGAGCCAGCCCAAGAACTTCTCGTTTGACGACCAAAGCATCCGTC
GCGGATTCATACGTAAGGTGTACCTGATTCTAATGGGACAACTAATCGTC
ACTTTTGGAGCTGTTGCCCTGTTTGTATACCACGAGGGCACTAAAACCTT
TGCCAGGAATAACATGTGGCTCTTTTGGGTTGCCCTCGGCGTAATGTTAG
TAACCATGCTGTCTATGGCTTGCTGCGAAAGTGTGCGCCGCCAAACACCG
ACGAACTTCATATTCTTGGGTCTGTTTACAGCAGCTCAGTCGTTCTTAAT
GGGAGTTTCCGCAACCAAATATGCTCCGAAAGAGGTTCTCATGGCGGTGG
GCATAACAGCAGCGGTTTGCTTGGCCCTAACGATCTTCGCCTTGCAGACA
AAGTACGACTTTACTATGATGGGCGGTATTTTGATCGCCTGCATGGTGGT
GTTCCTGATCTTCGGCATCGTGGCCATCTTTGTAAAGGGAAAGATCATAA
CACTGGTGTACGCCTCGATTGGAGCGCTGCTCTTCTCCGTTTATCTCATC
TACGACACACAGTTAATGATGGGCGGCGAGCACAAATACTCTATCAGTCC
CGAGGAGTACATCTTTGCGGCACTAAACCTCTACCTGGACATCATCAATA
TCTTCATGTACATTCTGACTATAATCGGCGCATCGCGCGACTAAGTTCCG
CTCTATTTCCAAATATTGTTTGCAGCTTAATCGGGTTATTCAGTAACCTG
GAATACACGAATATTGTTGTCGCGTAATCTCATCGGTGTGCTCCCCCAGT
GGAGGTAATCTTCAACTAACGAATTACTCAAATACTTACAAATCTATCTA
CTTCGTGTTGTGTTTGCCCATTTTCCCCGTTTCCTTCTAGTTCTAAATGT
CAACTAAGGCTATATGAACTACTTACTTTTTGTTATGTATGTTTTATTGT
TGCTTAAGTTGAGGCGCAAACCAAGTGGATATTTCCAAATTTAAAAATAA
AAAAATTATATATATGTATGTATACCAAATGATATGCCATTCAGATAAAC
GAAACAACAATAAATAGTCACGTATAAACATATTTATGTAAAAATATACA
TATAAGCAAGTTGGCTTGCAGTTGTTAACACATAAAACTTAACCGTGTGT
AATAACCAAGGAATCCCGATTTTCAACTATGAATCAAGTACCGAACATTG
TAATCCCTGCAGCGACACTGAGTTTAAAGTCAACAATAAAGCGCATCTAT
TTATTAAAAAAAAAAAAAAAAAA

GH26622.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
Nmda1-RF 2246 Nmda1-RF 89..2146 1..2058 10290 100 Plus
Nmda1-RC 1945 Nmda1-RC 345..1845 558..2058 7505 100 Plus
Nmda1-RD 1803 Nmda1-RD 303..1803 558..2058 7505 100 Plus
Nmda1-RC 1945 Nmda1-RC 250..346 122..218 485 100 Plus
Nmda1-RD 1803 Nmda1-RD 208..304 122..218 485 100 Plus
Nmda1-RC 1945 Nmda1-RC 205..251 1..47 235 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 05:45:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 8764393..8765315 2055..1133 4615 100 Minus
chr2R 21145070 chr2R 8765683..8766517 886..46 4065 99.2 Minus
chr2R 21145070 chr2R 8765370..8765621 1136..885 1260 100 Minus
chr2R 21145070 chr2R 8762588..8762934 1478..1132 400 74.4 Minus
chr2R 21145070 chr2R 8766978..8767028 51..1 255 100 Minus
chr3R 27901430 chr3R 9977842..9977979 1464..1327 240 78.3 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:09:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 05:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12877091..12878016 2058..1133 4630 100 Minus
2R 25286936 2R 12878384..12879224 886..46 4205 100 Minus
2R 25286936 2R 12878071..12878322 1136..885 1260 100 Minus
2R 25286936 2R 12875289..12875635 1478..1132 415 74.6 Minus
2R 25286936 2R 12879685..12879735 51..1 255 100 Minus
3R 32079331 3R 14152992..14153129 1464..1327 240 78.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 12878290..12879215 2058..1133 4630 100 Minus
2R 25260384 2R 12879583..12880423 886..46 4205 100 Minus
2R 25260384 2R 12879270..12879521 1136..885 1260 100 Minus
2R 25260384 2R 12876488..12876777 1478..1189 400 75.8 Minus
2R 25260384 2R 12880884..12880934 51..1 255 100 Minus
3R 31820162 3R 13893823..13893960 1464..1327 240 78.2 Minus
Blast to na_te.dros performed 2019-03-16 05:45:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\Mar 610 Dwil\Mar MAR 610bp Derived from AF518731. 253..354 1905..1801 119 67 Minus

GH26622.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 05:46:24 Download gff for GH26622.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 8764393..8765313 1135..2055 96 <- Minus
chr2R 8765372..8765620 886..1134 100 <- Minus
chr2R 8765684..8766515 48..885 99 <- Minus
chr2R 8766982..8767028 1..47 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:57:41 Download gff for GH26622.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RE 39..975 558..1494 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:05:05 Download gff for GH26622.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RE 39..975 558..1494 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:37:39 Download gff for GH26622.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RF 1..951 544..1494 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:35:47 Download gff for GH26622.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RE 39..975 558..1494 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:07:38 Download gff for GH26622.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RF 1..951 544..1494 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:54:25 Download gff for GH26622.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RF 89..2143 1..2055 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:05:04 Download gff for GH26622.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RF 89..2143 1..2055 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:37:39 Download gff for GH26622.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RF 64..2118 1..2055 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:35:47 Download gff for GH26622.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RF 89..2143 1..2055 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:07:38 Download gff for GH26622.complete
Subject Subject Range Query Range Percent Splice Strand
Nmda1-RF 64..2118 1..2055 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:46:24 Download gff for GH26622.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12877094..12878014 1135..2055 100 <- Minus
2R 12878073..12878321 886..1134 100 <- Minus
2R 12878385..12879222 48..885 100 <- Minus
2R 12879689..12879735 1..47 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:46:24 Download gff for GH26622.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12877094..12878014 1135..2055 100 <- Minus
2R 12878073..12878321 886..1134 100 <- Minus
2R 12878385..12879222 48..885 100 <- Minus
2R 12879689..12879735 1..47 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 05:46:24 Download gff for GH26622.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12877094..12878014 1135..2055 100 <- Minus
2R 12878073..12878321 886..1134 100 <- Minus
2R 12878385..12879222 48..885 100 <- Minus
2R 12879689..12879735 1..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:37:39 Download gff for GH26622.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8764599..8765519 1135..2055 100 <- Minus
arm_2R 8765578..8765826 886..1134 100 <- Minus
arm_2R 8765890..8766727 48..885 100 <- Minus
arm_2R 8767194..8767240 1..47 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:12:47 Download gff for GH26622.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12878293..12879213 1135..2055 100 <- Minus
2R 12879272..12879520 886..1134 100 <- Minus
2R 12879584..12880421 48..885 100 <- Minus
2R 12880888..12880934 1..47 100   Minus

GH26622.hyp Sequence

Translation from 543 to 1493

> GH26622.hyp
MSYFADPNQQYNYGGGNPPQGGYGGYPPQGGYPPQGPPQGYPPYAQGGAQ
PYPQPYGQGPPPGGYAPQPGFIQPPPSAGGYGAYDDPESQPKNFSFDDQS
IRRGFIRKVYLILMGQLIVTFGAVALFVYHEGTKTFARNNMWLFWVALGV
MLVTMLSMACCESVRRQTPTNFIFLGLFTAAQSFLMGVSATKYAPKEVLM
AVGITAAVCLALTIFALQTKYDFTMMGGILIACMVVFLIFGIVAIFVKGK
IITLVYASIGALLFSVYLIYDTQLMMGGEHKYSISPEEYIFAALNLYLDI
INIFMYILTIIGASRD*

GH26622.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:36:39
Subject Length Description Subject Range Query Range Score Percent Strand
Nmda1-PI 316 CG3798-PI 1..316 1..316 1682 100 Plus
Nmda1-PF 316 CG3798-PF 1..316 1..316 1682 100 Plus
Nmda1-PE 324 CG3798-PE 12..324 4..316 1658 99.4 Plus
Nmda1-PC 324 CG3798-PC 12..324 4..316 1658 99.4 Plus
Nmda1-PD 324 CG3798-PD 12..324 4..316 1658 99.4 Plus

GH26622.pep Sequence

Translation from 543 to 1493

> GH26622.pep
MSYFADPNQQYNYGGGNPPQGGYGGYPPQGGYPPQGPPQGYPPYAQGGAQ
PYPQPYGQGPPPGGYAPQPGFIQPPPSAGGYGAYDDPESQPKNFSFDDQS
IRRGFIRKVYLILMGQLIVTFGAVALFVYHEGTKTFARNNMWLFWVALGV
MLVTMLSMACCESVRRQTPTNFIFLGLFTAAQSFLMGVSATKYAPKEVLM
AVGITAAVCLALTIFALQTKYDFTMMGGILIACMVVFLIFGIVAIFVKGK
IITLVYASIGALLFSVYLIYDTQLMMGGEHKYSISPEEYIFAALNLYLDI
INIFMYILTIIGASRD*

GH26622.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11997-PA 323 GF11997-PA 68..323 61..316 1189 92.2 Plus
Dana\GF11999-PA 247 GF11999-PA 14..247 82..316 888 71.1 Plus
Dana\GF18785-PA 255 GF18785-PA 18..253 79..314 710 56.4 Plus
Dana\GF13645-PA 255 GF13645-PA 26..251 86..311 440 40.3 Plus
Dana\GF15315-PA 226 GF15315-PA 35..225 127..316 347 39.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22542-PA 324 GG22542-PA 12..324 4..316 1573 96.2 Plus
Dere\GG22543-PA 244 GG22543-PA 11..244 82..316 837 71.9 Plus
Dere\GG21447-PA 264 GG21447-PA 5..263 49..314 698 47.7 Plus
Dere\GG23314-PA 274 GG23314-PA 51..270 92..311 401 38.6 Plus
Dere\GG24567-PA 221 GG24567-PA 23..221 116..316 240 32.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20515-PA 331 GH20515-PA 70..331 54..316 1202 87.5 Plus
Dgri\GH20517-PA 246 GH20517-PA 11..245 80..315 851 72.5 Plus
Dgri\GH19695-PA 263 GH19695-PA 11..263 67..316 849 65.2 Plus
Dgri\GH23740-PA 263 GH23740-PA 20..263 73..316 840 65.6 Plus
Dgri\GH21302-PA 289 GH21302-PA 65..287 90..312 590 49.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
Nmda1-PI 316 CG3798-PI 1..316 1..316 1682 100 Plus
Nmda1-PF 316 CG3798-PF 1..316 1..316 1682 100 Plus
Nmda1-PE 324 CG3798-PE 12..324 4..316 1658 99.4 Plus
Nmda1-PC 324 CG3798-PC 12..324 4..316 1658 99.4 Plus
Nmda1-PD 324 CG3798-PD 12..324 4..316 1658 99.4 Plus
Nmda1-PH 313 CG3798-PH 3..313 6..316 1656 100 Plus
Nmda1-PG 313 CG3798-PG 3..313 6..316 1656 100 Plus
Nmda1-PA 313 CG3798-PA 3..313 6..316 1656 100 Plus
Nmda1-PB 313 CG3798-PB 3..313 6..316 1656 100 Plus
Lfg-PB 244 CG3814-PB 11..244 82..316 877 71.5 Plus
Lfg-PD 239 CG3814-PD 15..239 92..316 862 72.4 Plus
Lfg-PA 239 CG3814-PA 15..239 92..316 862 72.4 Plus
Lfg-PC 203 CG3814-PC 1..203 114..316 762 70.9 Plus
CG9722-PA 264 CG9722-PA 25..263 79..314 709 55.8 Plus
CG30379-PB 295 CG30379-PB 72..291 92..311 445 37.3 Plus
CG33673-PB 235 CG33673-PB 16..235 96..316 363 36 Plus
CG34430-PA 264 CG34430-PA 34..232 94..300 184 27.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21061-PA 324 GI21061-PA 80..324 71..316 1117 85.4 Plus
Dmoj\GI24550-PA 263 GI24550-PA 7..263 57..316 962 67.4 Plus
Dmoj\GI21062-PA 244 GI21062-PA 11..244 82..316 878 71.5 Plus
Dmoj\GI19790-PA 285 GI19790-PA 23..279 57..308 591 47.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17450-PA 319 GL17450-PA 64..319 61..316 1182 92.2 Plus
Dper\GL17451-PA 245 GL17451-PA 12..245 82..316 831 71.5 Plus
Dper\GL23305-PA 282 GL23305-PA 13..252 67..308 819 68.2 Plus
Dper\GL11699-PA 304 GL11699-PA 17..300 35..311 528 39 Plus
Dper\GL18462-PA 223 GL18462-PA 23..214 116..307 333 38.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17693-PB 310 GA17693-PB 55..310 61..316 1187 92.2 Plus
Dpse\GA17693-PC 308 GA17693-PC 53..308 61..316 1187 92.2 Plus
Dpse\GA17693-PA 319 GA17693-PA 64..319 61..316 1182 92.2 Plus
Dpse\GA27217-PA 260 GA27217-PA 21..260 79..316 864 71.7 Plus
Dpse\GA17704-PA 245 GA17704-PA 12..245 82..316 835 71.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20327-PA 324 GM20327-PA 12..324 4..316 1605 99 Plus
Dsec\GM20328-PA 244 GM20328-PA 11..244 82..316 834 71.9 Plus
Dsec\GM25879-PA 264 GM25879-PA 10..263 54..314 720 52.1 Plus
Dsec\GM20992-PA 243 GM20992-PA 17..239 44..311 385 34 Plus
Dsec\GM16580-PA 222 GM16580-PA 24..218 112..312 266 35.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25804-PA 324 GD25804-PA 12..324 4..316 1594 98.1 Plus
Dsim\GD25805-PA 244 GD25805-PA 11..244 82..316 834 71.9 Plus
Dsim\GD20449-PA 262 GD20449-PA 25..261 79..314 721 56.1 Plus
Dsim\GD10521-PA 284 GD10521-PA 13..280 32..311 436 32.9 Plus
Dsim\GD10520-PA 275 GD10520-PA 17..271 44..311 423 34.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21985-PA 333 GJ21985-PA 71..333 45..316 1120 82 Plus
Dvir\GJ22617-PA 262 GJ22617-PA 19..262 73..316 1006 75.4 Plus
Dvir\GJ21986-PA 244 GJ21986-PA 11..244 82..316 889 71.9 Plus
Dvir\GJ15114-PA 302 GJ15114-PA 38..299 49..310 613 48.5 Plus
Dvir\GJ22864-PA 199 GJ22864-PA 3..177 119..294 318 38.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20878-PA 323 GK20878-PA 79..323 71..316 1174 90.7 Plus
Dwil\GK19213-PA 271 GK19213-PA 41..271 85..315 893 68.8 Plus
Dwil\GK20879-PA 244 GK20879-PA 11..244 82..316 872 69.8 Plus
Dwil\GK21973-PA 299 GK21973-PA 72..297 87..312 610 50.4 Plus
Dwil\GK20410-PA 176 GK20410-PA 4..173 120..289 242 30.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13412-PA 324 GE13412-PA 12..324 4..316 1233 94.6 Plus
Dyak\GE13413-PA 244 GE13413-PA 11..244 82..316 837 71.9 Plus
Dyak\GE10054-PA 264 GE10054-PA 29..263 80..314 746 56.6 Plus
Dyak\GE19159-PA 242 GE19159-PA 51..238 92..311 389 39.1 Plus
Dyak\GE15302-PA 223 GE15302-PA 23..222 116..316 257 33.8 Plus