Clone GH26896 Report

Search the DGRC for GH26896

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:268
Well:96
Vector:pOT2
Associated Gene/TranscriptCG13130-RA
Protein status:GH26896.pep: wuzgold
Preliminary Size:965
Sequenced Size:793

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13130 2001-01-01 Release 2 assignment
CG13130 2001-11-09 Blastp of sequenced clone
CG13130 2003-01-01 Sim4 clustering to Release 3
CG13130 2008-04-29 Release 5.5 accounting
CG13130 2008-08-15 Release 5.9 accounting
CG13130 2008-12-18 5.12 accounting

Clone Sequence Records

GH26896.complete Sequence

793 bp (793 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069222

> GH26896.complete
TTGCTTCTGCTCGCCGACATCGACGTCCACGGCCCTCAGGAACAAGTTGA
AGTTGCAACACAACTCACCACCAACACCACCACCACTATCGCTCGGCGGC
GGCAGCGAAACAGCTGCCCACTCCACCGACGCAGTGGTGGATAAGCAACC
CCTGCACTGAGAAATAAATAAGTTTCCAAAATATGCTCAGTGCATTGGAA
CGGAATGGAAACGAAACAGAGGTCCTGTCAACCTGTTGGTTTTACCGCCA
TACATGAGTAATGCCTCGTACTCACCACCCATTCGGCAGCATAATCATAA
TCATAAGTTGCTAAGTTAATTGCGCAGCACTGATCAATAACACAGATTCC
AGATTCCCGGGACCCAAAGATGATGATGATGATGATGGTTGCGACGATGA
GAATGAGGATGATGATGATGATGATGGGGAACACAGGCAGCTGGGCCTGG
GAGCAGCTTTCATTGAAAGCATTTCCCTTTTTCGACACATTAATGAAATG
TAAAATAATCTGCCCGAATGGGCAAAAACTTTCATTAGATGAGTTGGGCA
TGCCACTTTTGTGGTTAACTCGGTGTATTAAAATAAAACTGATTTCGATC
CCAGGACCATCACACTGGAATTCGCCAAGGGAAAATTATAGTTATGATAT
AGTTGCTATAATAGTTAGTATATATAAAATTATACATATTTTATTCCCGA
ACATATCGATAATAAGATAATAAATTAAAACACATCCATTATAGATTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH26896.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG13130-RA 757 CG13130-RA 1..748 1..748 3740 100 Plus
bib-RA 3397 bib-RA 1..83 83..1 415 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:45:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9982619..9983195 747..171 2885 100 Minus
chr2L 23010047 chr2L 9983434..9983605 172..1 860 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:09:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9983670..9984247 748..171 2890 100 Minus
2L 23513712 2L 9984486..9984657 172..1 860 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:03
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9983670..9984247 748..171 2890 100 Minus
2L 23513712 2L 9984486..9984657 172..1 860 100 Minus
Blast to na_te.dros performed 2019-03-16 17:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 3229..3313 739..659 127 64.7 Minus
Dwil\Vege 884 Dwil\Vege VEGE 884bp Derived from AF518730. 626..708 714..632 117 63.1 Minus
transib2 2844 transib2 TRANSIB2 2844bp 2194..2250 674..730 113 70.7 Plus
I-element 5371 I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). 1209..1258 41..93 112 75.5 Plus

GH26896.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:46:22 Download gff for GH26896.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9982619..9982939 427..747 100 == Minus
chr2L 9982998..9983193 173..368 100 <- Minus
chr2L 9983434..9983605 1..172 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:58:02 Download gff for GH26896.complete
Subject Subject Range Query Range Percent Splice Strand
CG13130-RA 1..351 370..720 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:57:07 Download gff for GH26896.complete
Subject Subject Range Query Range Percent Splice Strand
CG13130-RA 1..351 370..720 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:00:54 Download gff for GH26896.complete
Subject Subject Range Query Range Percent Splice Strand
CG13130-RA 1..351 370..720 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:40:01 Download gff for GH26896.complete
Subject Subject Range Query Range Percent Splice Strand
CG13130-RA 1..351 370..720 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:11:06 Download gff for GH26896.complete
Subject Subject Range Query Range Percent Splice Strand
CG13130-RA 1..747 1..747 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:57:07 Download gff for GH26896.complete
Subject Subject Range Query Range Percent Splice Strand
CG13130-RA 1..747 1..747 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:00:54 Download gff for GH26896.complete
Subject Subject Range Query Range Percent Splice Strand
CG13130-RA 87..833 1..747 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:40:01 Download gff for GH26896.complete
Subject Subject Range Query Range Percent Splice Strand
CG13130-RA 1..747 1..747 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:22 Download gff for GH26896.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9983671..9984245 173..747 100 <- Minus
2L 9984486..9984657 1..172 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:22 Download gff for GH26896.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9983671..9984245 173..747 100 <- Minus
2L 9984486..9984657 1..172 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:22 Download gff for GH26896.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9983671..9984245 173..747 100 <- Minus
2L 9984486..9984657 1..172 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:00:54 Download gff for GH26896.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9983671..9984245 173..747 100 <- Minus
arm_2L 9984486..9984657 1..172 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:23:03 Download gff for GH26896.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9983671..9984245 173..747 100 <- Minus
2L 9984486..9984657 1..172 100   Minus

GH26896.hyp Sequence

Translation from 369 to 719

> GH26896.hyp
MMMMMMVATMRMRMMMMMMGNTGSWAWEQLSLKAFPFFDTLMKCKIICPN
GQKLSLDELGMPLLWLTRCIKIKLISIPGPSHWNSPRENYSYDIVAIIVS
IYKIIHILFPNISIIR*
Sequence GH26896.hyp has no blast hits.

GH26896.pep Sequence

Translation from 369 to 719

> GH26896.pep
MMMMMMVATMRMRMMMMMMGNTGSWAWEQLSLKAFPFFDTLMKCKIICPN
GQKLSLDELGMPLLWLTRCIKIKLISIPGPSHWNSPRENYSYDIVAIIVS
IYKIIHILFPNISIIR*

GH26896.pep Blast Records

Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19538-PA 80 GM19538-PA 9..75 20..85 306 86.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22314-PA 103 GD22314-PA 13..85 20..93 338 88 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:40:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17967-PA 63 GE17967-PA 1..62 5..66 231 79 Plus