Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH26896.complete Sequence
793 bp (793 high quality bases) assembled on 2001-11-09
GenBank Submission: AY069222
> GH26896.complete
TTGCTTCTGCTCGCCGACATCGACGTCCACGGCCCTCAGGAACAAGTTGA
AGTTGCAACACAACTCACCACCAACACCACCACCACTATCGCTCGGCGGC
GGCAGCGAAACAGCTGCCCACTCCACCGACGCAGTGGTGGATAAGCAACC
CCTGCACTGAGAAATAAATAAGTTTCCAAAATATGCTCAGTGCATTGGAA
CGGAATGGAAACGAAACAGAGGTCCTGTCAACCTGTTGGTTTTACCGCCA
TACATGAGTAATGCCTCGTACTCACCACCCATTCGGCAGCATAATCATAA
TCATAAGTTGCTAAGTTAATTGCGCAGCACTGATCAATAACACAGATTCC
AGATTCCCGGGACCCAAAGATGATGATGATGATGATGGTTGCGACGATGA
GAATGAGGATGATGATGATGATGATGGGGAACACAGGCAGCTGGGCCTGG
GAGCAGCTTTCATTGAAAGCATTTCCCTTTTTCGACACATTAATGAAATG
TAAAATAATCTGCCCGAATGGGCAAAAACTTTCATTAGATGAGTTGGGCA
TGCCACTTTTGTGGTTAACTCGGTGTATTAAAATAAAACTGATTTCGATC
CCAGGACCATCACACTGGAATTCGCCAAGGGAAAATTATAGTTATGATAT
AGTTGCTATAATAGTTAGTATATATAAAATTATACATATTTTATTCCCGA
ACATATCGATAATAAGATAATAAATTAAAACACATCCATTATAGATTAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GH26896.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:58:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13130-RA | 757 | CG13130-RA | 1..748 | 1..748 | 3740 | 100 | Plus |
bib-RA | 3397 | bib-RA | 1..83 | 83..1 | 415 | 100 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:45:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 9982619..9983195 | 747..171 | 2885 | 100 | Minus |
chr2L | 23010047 | chr2L | 9983434..9983605 | 172..1 | 860 | 100 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:09:54 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:45:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9983670..9984247 | 748..171 | 2890 | 100 | Minus |
2L | 23513712 | 2L | 9984486..9984657 | 172..1 | 860 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9983670..9984247 | 748..171 | 2890 | 100 | Minus |
2L | 23513712 | 2L | 9984486..9984657 | 172..1 | 860 | 100 | Minus |
Blast to na_te.dros performed 2019-03-16 17:45:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 3229..3313 | 739..659 | 127 | 64.7 | Minus |
Dwil\Vege | 884 | Dwil\Vege VEGE 884bp Derived from AF518730. | 626..708 | 714..632 | 117 | 63.1 | Minus |
transib2 | 2844 | transib2 TRANSIB2 2844bp | 2194..2250 | 674..730 | 113 | 70.7 | Plus |
I-element | 5371 | I-element DMIFACA 5371bp Derived from M14954 (g157749) (Rel. 44, Last updated, Version 2). | 1209..1258 | 41..93 | 112 | 75.5 | Plus |
GH26896.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:46:22 Download gff for
GH26896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 9982619..9982939 | 427..747 | 100 | == | Minus |
chr2L | 9982998..9983193 | 173..368 | 100 | <- | Minus |
chr2L | 9983434..9983605 | 1..172 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:58:02 Download gff for
GH26896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13130-RA | 1..351 | 370..720 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:57:07 Download gff for
GH26896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13130-RA | 1..351 | 370..720 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:00:54 Download gff for
GH26896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13130-RA | 1..351 | 370..720 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:40:01 Download gff for
GH26896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13130-RA | 1..351 | 370..720 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:11:06 Download gff for
GH26896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13130-RA | 1..747 | 1..747 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:57:07 Download gff for
GH26896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13130-RA | 1..747 | 1..747 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:00:54 Download gff for
GH26896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13130-RA | 87..833 | 1..747 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:40:01 Download gff for
GH26896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13130-RA | 1..747 | 1..747 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:22 Download gff for
GH26896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9983671..9984245 | 173..747 | 100 | <- | Minus |
2L | 9984486..9984657 | 1..172 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:22 Download gff for
GH26896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9983671..9984245 | 173..747 | 100 | <- | Minus |
2L | 9984486..9984657 | 1..172 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:46:22 Download gff for
GH26896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9983671..9984245 | 173..747 | 100 | <- | Minus |
2L | 9984486..9984657 | 1..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:00:54 Download gff for
GH26896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9983671..9984245 | 173..747 | 100 | <- | Minus |
arm_2L | 9984486..9984657 | 1..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:23:03 Download gff for
GH26896.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9983671..9984245 | 173..747 | 100 | <- | Minus |
2L | 9984486..9984657 | 1..172 | 100 | | Minus |
GH26896.hyp Sequence
Translation from 369 to 719
> GH26896.hyp
MMMMMMVATMRMRMMMMMMGNTGSWAWEQLSLKAFPFFDTLMKCKIICPN
GQKLSLDELGMPLLWLTRCIKIKLISIPGPSHWNSPRENYSYDIVAIIVS
IYKIIHILFPNISIIR*
Sequence GH26896.hyp has no blast hits.
GH26896.pep Sequence
Translation from 369 to 719
> GH26896.pep
MMMMMMVATMRMRMMMMMMGNTGSWAWEQLSLKAFPFFDTLMKCKIICPN
GQKLSLDELGMPLLWLTRCIKIKLISIPGPSHWNSPRENYSYDIVAIIVS
IYKIIHILFPNISIIR*
GH26896.pep Blast Records
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 14:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM19538-PA | 80 | GM19538-PA | 9..75 | 20..85 | 306 | 86.6 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 14:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD22314-PA | 103 | GD22314-PA | 13..85 | 20..93 | 338 | 88 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 14:40:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE17967-PA | 63 | GE17967-PA | 1..62 | 5..66 | 231 | 79 | Plus |