BDGP Sequence Production Resources |
Search the DGRC for GH27072
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 270 |
Well: | 72 |
Vector: | pOT2 |
Associated Gene/Transcript | scra-RC |
Protein status: | GH27072.pep: gold |
Preliminary Size: | 2675 |
Sequenced Size: | 2279 |
Gene | Date | Evidence |
---|---|---|
CG2092 | 2001-11-08 | Blastp of sequenced clone |
scra | 2008-04-29 | Release 5.5 accounting |
scra | 2008-08-15 | Release 5.9 accounting |
scra | 2008-12-18 | 5.12 accounting |
2279 bp (2279 high quality bases) assembled on 2001-11-08
GenBank Submission: AY069223
> GH27072.complete CCACCCTGCCAAATACGACAAAGTGGCAGCCCTTGGCAACTCACCACTGG CATTTTCTCCCCAATTTCGGTATTTCGTCGTGGTCAGTTGAGGGTCCTAT GGCATTTGCGCGTCGTTTTGAAATTATTCAACACATCTGAAAAGCCAACC GCCGAAACGAGCAGAAGCGACGCGCAGAATTTCGAATGCAAACGGACGCG CAACCCGCCAGTGAAAAACAAACATCAAATATCGCCAACGTGGAGTGTCG AGCAGTACAGTGAATTCAATAGCATAGTGCGCGCAATCACAACTCGCATT TGCATTTGCAGCTGCAGCAACAACAATGGACCCGTTTACTCAGCACATGC TCGAGAAGGCGGAACAGCGCAGTCGCGCCCTTGGCATCAGCAATGCCAGC AAATTTCCGCTCGTCGAGTGCAGCGTTCCAAGCTCCTCCGCCACCTCCGC ATCCGGCGGGGATGCTGGGGTCCTGGCACCGAGGAGCCGGTCGCCTGGAG GCCAGAGCGCGGCTAGCGGCGGCGGCAAGGTCGTTACGTTGGGAAAGGCC ACGCTGGAGGCGTCGCCGGCGAAGCCGCTGCGTCACTATACGGCGGTAAA CAAGGAAAACTTGGATATGGGCATAGAGATAAACATAACCACGGACAAGC CAATTGGGGTGCAAGTTGAGATTCAGGAGCAGGAGGTGACAGATGACGAA GAGCAGGCGGAAGGAGGTGCGCTAAATCCCCTGCTGGAGGCGGAACCAGT AAACCAGCCCCTAGCCAGGCTAAGGGACACTTCCCGCAGCCGACTGCAAC GCATGGGTGCCCTGTACTCAAACACGGACGATCTATCCTCCCCAATCCAC CGAACCGAGGGGCAGTTCCATGTGACAACGGGTGAGGAAGAGGACTGCGG CAACCGTAGCAGCAGGCAACCAAAACAACGGTTGGGCAAACTGGCCGCCT TGGCGGATACCATCAATCAGTGGGAGGATGACACGTCGCACCACGAAGTG CACAGACTGCTCGAAGCACCTCCACCGAAACCGCATTTGTCCAGTCGAAG GGCCGAGAAGGGTCCAGCTCCACTGCCACCCAAGAAGGATGAAGTCGACG AGGCAAGCAGGACCAAGCAGCTGAAGTGGGATCCCAAGGTATTGAGCTCT CTGGAGGCACAAGGTTTTCAGCGCCGCGAATCATCGACCATTAAACACAC ATATGATTATGCCAAACAGGAAGAGGCGGCCCCAGCCTCCAAAGTGGAAG ATGCGGTATTAACTGCCAAGCCGCCAGTGCCGCAGAAATCAACGACGGTC AGCCAGGTCGCCAAGAACTTTGCATCTTCCGCCCCAGCGCCTAAGCCCGC ACCAGCGCCTGCTGTTAGTGTGAAGTCCGGCTTGGTTTCCGGACGGGCGG CTCTCTTTGAAAACAAGGGAACCGGAGGACAGTCGCAAGGCCTACGCAAC CAGAAGGATCCTTGTGAGCTGTCGCTGAAGGAGCGGATGAAGCTGTTCGA AACGGGCAACAACAAAGCGATGTTGCCGATGGCGCCAATAGGATCTGCTC CCAGTATTACCCAAATCCGAGCGGAAGAGGTGAAACAACATTTAGCTGCA ATGCATCCGGTGACTGCTGCCGCAGCTACTACCGTGGTTGCAGCAACCAA GCCGAAACAGGAAAACAAGCTGCGTGACAAGGTGGCCGCTTTGGTGGCAA ATGCGCAATCAAGTGCAGAGACGCGTATCAAGGACATTGATCGCCAAAGG CAGGAAGACATGCAGATTATTTCTAATCGCTTTAACAAACAAAAGGAGCT CTTTGACAATCAACCATCCGATAGTTCTGTGGCTGCTCAAGCTCGACCTC CCGCGCCAGCTCCCAGCAGAGTAGTGCGGCCCATGCCACCGCCTCCACCA CCGCCCATCGCTGCTCTCTCGCCCGGACTGGCCAGCAGCAAGAGGCGATC ACCTGGTGATGCGCCCACCACTGACGAGGATTCGAAGCGAGCCCGCAAAT CGCATTCGGATCGTCTGTATCCCGCCCTGTCCGACCTCGACTCCAGCGGT GACAACTGCTGCGCCGCCGAAACTGCCTCCGCTACGGATGACAGCCATCA ACAGGACGAGGAGGAAACCGAAAGGTGCGCTGAAAAATGCTATTCCTGCT TGCTATTTCTGCTCTGCATCGAGTAGCATTCCAAGACTGATAGGCCTAAG AGACATAGCTTTAAACCCCATCCCCTAGACAAGACCAACAATAAAATCGC TTTCTTAACTAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 3478280..3479208 | 658..1586 | 4585 | 99.6 | Plus |
chr2R | 21145070 | chr2R | 3479274..3479639 | 1587..1952 | 1815 | 99.7 | Plus |
chr2R | 21145070 | chr2R | 3477454..3477796 | 1..343 | 1700 | 99.7 | Plus |
chr2R | 21145070 | chr2R | 3477900..3478219 | 341..660 | 1600 | 100 | Plus |
chr2R | 21145070 | chr2R | 3479694..3480005 | 1949..2260 | 1545 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 7590945..7591873 | 658..1586 | 4645 | 100 | Plus |
2R | 25286936 | 2R | 7591938..7592303 | 1587..1952 | 1830 | 100 | Plus |
2R | 25286936 | 2R | 7590119..7590461 | 1..343 | 1715 | 100 | Plus |
2R | 25286936 | 2R | 7590565..7590884 | 341..660 | 1600 | 100 | Plus |
2R | 25286936 | 2R | 7592358..7592671 | 1949..2262 | 1555 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 7592144..7593072 | 658..1586 | 4645 | 100 | Plus |
2R | 25260384 | 2R | 7593137..7593502 | 1587..1952 | 1830 | 100 | Plus |
2R | 25260384 | 2R | 7591318..7591660 | 1..343 | 1715 | 100 | Plus |
2R | 25260384 | 2R | 7591764..7592083 | 341..660 | 1600 | 100 | Plus |
2R | 25260384 | 2R | 7593557..7593870 | 1949..2262 | 1555 | 99.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 3477454..3477796 | 1..343 | 99 | -> | Plus |
chr2R | 3477903..3478217 | 344..658 | 100 | -> | Plus |
chr2R | 3478281..3479208 | 659..1586 | 99 | -> | Plus |
chr2R | 3479274..3479639 | 1587..1952 | 99 | -> | Plus |
chr2R | 3479698..3480005 | 1953..2260 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scra-RC | 1..1851 | 326..2176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scra-RC | 1..1851 | 326..2176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scra-RC | 1..1851 | 326..2176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scra-RC | 1..1851 | 326..2176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scra-RC | 1..1851 | 326..2176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scra-RC | 1..2260 | 1..2260 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scra-RC | 1..2260 | 1..2260 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scra-RC | 1..2260 | 1..2260 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scra-RC | 1..2260 | 1..2260 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
scra-RC | 1..2260 | 1..2260 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7590119..7590461 | 1..343 | 100 | -> | Plus |
2R | 7591938..7592303 | 1587..1952 | 100 | -> | Plus |
2R | 7590568..7590882 | 344..658 | 100 | -> | Plus |
2R | 7590946..7591873 | 659..1586 | 100 | -> | Plus |
2R | 7592362..7592669 | 1953..2260 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7590119..7590461 | 1..343 | 100 | -> | Plus |
2R | 7591938..7592303 | 1587..1952 | 100 | -> | Plus |
2R | 7590568..7590882 | 344..658 | 100 | -> | Plus |
2R | 7590946..7591873 | 659..1586 | 100 | -> | Plus |
2R | 7592362..7592669 | 1953..2260 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7590119..7590461 | 1..343 | 100 | -> | Plus |
2R | 7591938..7592303 | 1587..1952 | 100 | -> | Plus |
2R | 7590568..7590882 | 344..658 | 100 | -> | Plus |
2R | 7590946..7591873 | 659..1586 | 100 | -> | Plus |
2R | 7592362..7592669 | 1953..2260 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 3477624..3477966 | 1..343 | 100 | -> | Plus |
arm_2R | 3478073..3478387 | 344..658 | 100 | -> | Plus |
arm_2R | 3478451..3479378 | 659..1586 | 100 | -> | Plus |
arm_2R | 3479443..3479808 | 1587..1952 | 100 | -> | Plus |
arm_2R | 3479867..3480174 | 1953..2260 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 7591767..7592081 | 344..658 | 100 | -> | Plus |
2R | 7592145..7593072 | 659..1586 | 100 | -> | Plus |
2R | 7591318..7591660 | 1..343 | 100 | -> | Plus |
2R | 7593137..7593502 | 1587..1952 | 100 | -> | Plus |
2R | 7593561..7593868 | 1953..2260 | 100 | Plus |
Translation from 325 to 2175
> GH27072.pep MDPFTQHMLEKAEQRSRALGISNASKFPLVECSVPSSSATSASGGDAGVL APRSRSPGGQSAASGGGKVVTLGKATLEASPAKPLRHYTAVNKENLDMGI EINITTDKPIGVQVEIQEQEVTDDEEQAEGGALNPLLEAEPVNQPLARLR DTSRSRLQRMGALYSNTDDLSSPIHRTEGQFHVTTGEEEDCGNRSSRQPK QRLGKLAALADTINQWEDDTSHHEVHRLLEAPPPKPHLSSRRAEKGPAPL PPKKDEVDEASRTKQLKWDPKVLSSLEAQGFQRRESSTIKHTYDYAKQEE AAPASKVEDAVLTAKPPVPQKSTTVSQVAKNFASSAPAPKPAPAPAVSVK SGLVSGRAALFENKGTGGQSQGLRNQKDPCELSLKERMKLFETGNNKAML PMAPIGSAPSITQIRAEEVKQHLAAMHPVTAAAATTVVAATKPKQENKLR DKVAALVANAQSSAETRIKDIDRQRQEDMQIISNRFNKQKELFDNQPSDS SVAAQARPPAPAPSRVVRPMPPPPPPPIAALSPGLASSKRRSPGDAPTTD EDSKRARKSHSDRLYPALSDLDSSGDNCCAAETASATDDSHQQDEEETER CAEKCYSCLLFLLCIE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13186-PA | 1199 | GF13186-PA | 1..561 | 1..604 | 1880 | 72 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23289-PA | 1210 | GG23289-PA | 1..577 | 1..604 | 2597 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21874-PA | 1249 | GH21874-PA | 1..570 | 1..585 | 1448 | 60 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
scra-PC | 616 | CG2092-PC | 1..616 | 1..616 | 3153 | 100 | Plus |
scra-PB | 1239 | CG2092-PB | 1..604 | 1..604 | 3066 | 99.3 | Plus |
scra-PA | 1212 | CG2092-PA | 1..577 | 1..604 | 2893 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20377-PA | 1252 | GI20377-PA | 1..615 | 1..604 | 1701 | 63 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20018-PA | 1224 | GL20018-PA | 1..585 | 1..604 | 1739 | 64.3 | Plus |
Dper\GL11187-PA | 191 | GL11187-PA | 24..181 | 372..542 | 400 | 54.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15234-PB | 623 | GA15234-PB | 1..623 | 1..616 | 1983 | 68.9 | Plus |
Dpse\GA15234-PC | 1250 | GA15234-PC | 1..611 | 1..604 | 1894 | 67.9 | Plus |
Dpse\GA15234-PA | 1223 | GA15234-PA | 1..584 | 1..604 | 1721 | 63.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20966-PA | 1208 | GM20966-PA | 1..573 | 1..603 | 2539 | 90.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD15346-PA | 719 | GD15346-PA | 1..417 | 1..444 | 2096 | 91.2 | Plus |
Dsim\GD10494-PA | 930 | GD10494-PA | 142..477 | 241..603 | 1376 | 86.5 | Plus |
Dsim\GD10494-PA | 930 | GD10494-PA | 1..140 | 1..140 | 588 | 96.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22103-PA | 1221 | GJ22103-PA | 1..572 | 1..604 | 1644 | 62.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10680-PA | 1249 | GK10680-PA | 1..605 | 1..603 | 1650 | 63.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19135-PA | 1210 | GE19135-PA | 1..575 | 1..604 | 2489 | 89.9 | Plus |
Translation from 325 to 2175
> GH27072.hyp MDPFTQHMLEKAEQRSRALGISNASKFPLVECSVPSSSATSASGGDAGVL APRSRSPGGQSAASGGGKVVTLGKATLEASPAKPLRHYTAVNKENLDMGI EINITTDKPIGVQVEIQEQEVTDDEEQAEGGALNPLLEAEPVNQPLARLR DTSRSRLQRMGALYSNTDDLSSPIHRTEGQFHVTTGEEEDCGNRSSRQPK QRLGKLAALADTINQWEDDTSHHEVHRLLEAPPPKPHLSSRRAEKGPAPL PPKKDEVDEASRTKQLKWDPKVLSSLEAQGFQRRESSTIKHTYDYAKQEE AAPASKVEDAVLTAKPPVPQKSTTVSQVAKNFASSAPAPKPAPAPAVSVK SGLVSGRAALFENKGTGGQSQGLRNQKDPCELSLKERMKLFETGNNKAML PMAPIGSAPSITQIRAEEVKQHLAAMHPVTAAAATTVVAATKPKQENKLR DKVAALVANAQSSAETRIKDIDRQRQEDMQIISNRFNKQKELFDNQPSDS SVAAQARPPAPAPSRVVRPMPPPPPPPIAALSPGLASSKRRSPGDAPTTD EDSKRARKSHSDRLYPALSDLDSSGDNCCAAETASATDDSHQQDEEETER CAEKCYSCLLFLLCIE*