Clone GH27072 Report

Search the DGRC for GH27072

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:270
Well:72
Vector:pOT2
Associated Gene/Transcriptscra-RC
Protein status:GH27072.pep: gold
Preliminary Size:2675
Sequenced Size:2279

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2092 2001-11-08 Blastp of sequenced clone
scra 2008-04-29 Release 5.5 accounting
scra 2008-08-15 Release 5.9 accounting
scra 2008-12-18 5.12 accounting

Clone Sequence Records

GH27072.complete Sequence

2279 bp (2279 high quality bases) assembled on 2001-11-08

GenBank Submission: AY069223

> GH27072.complete
CCACCCTGCCAAATACGACAAAGTGGCAGCCCTTGGCAACTCACCACTGG
CATTTTCTCCCCAATTTCGGTATTTCGTCGTGGTCAGTTGAGGGTCCTAT
GGCATTTGCGCGTCGTTTTGAAATTATTCAACACATCTGAAAAGCCAACC
GCCGAAACGAGCAGAAGCGACGCGCAGAATTTCGAATGCAAACGGACGCG
CAACCCGCCAGTGAAAAACAAACATCAAATATCGCCAACGTGGAGTGTCG
AGCAGTACAGTGAATTCAATAGCATAGTGCGCGCAATCACAACTCGCATT
TGCATTTGCAGCTGCAGCAACAACAATGGACCCGTTTACTCAGCACATGC
TCGAGAAGGCGGAACAGCGCAGTCGCGCCCTTGGCATCAGCAATGCCAGC
AAATTTCCGCTCGTCGAGTGCAGCGTTCCAAGCTCCTCCGCCACCTCCGC
ATCCGGCGGGGATGCTGGGGTCCTGGCACCGAGGAGCCGGTCGCCTGGAG
GCCAGAGCGCGGCTAGCGGCGGCGGCAAGGTCGTTACGTTGGGAAAGGCC
ACGCTGGAGGCGTCGCCGGCGAAGCCGCTGCGTCACTATACGGCGGTAAA
CAAGGAAAACTTGGATATGGGCATAGAGATAAACATAACCACGGACAAGC
CAATTGGGGTGCAAGTTGAGATTCAGGAGCAGGAGGTGACAGATGACGAA
GAGCAGGCGGAAGGAGGTGCGCTAAATCCCCTGCTGGAGGCGGAACCAGT
AAACCAGCCCCTAGCCAGGCTAAGGGACACTTCCCGCAGCCGACTGCAAC
GCATGGGTGCCCTGTACTCAAACACGGACGATCTATCCTCCCCAATCCAC
CGAACCGAGGGGCAGTTCCATGTGACAACGGGTGAGGAAGAGGACTGCGG
CAACCGTAGCAGCAGGCAACCAAAACAACGGTTGGGCAAACTGGCCGCCT
TGGCGGATACCATCAATCAGTGGGAGGATGACACGTCGCACCACGAAGTG
CACAGACTGCTCGAAGCACCTCCACCGAAACCGCATTTGTCCAGTCGAAG
GGCCGAGAAGGGTCCAGCTCCACTGCCACCCAAGAAGGATGAAGTCGACG
AGGCAAGCAGGACCAAGCAGCTGAAGTGGGATCCCAAGGTATTGAGCTCT
CTGGAGGCACAAGGTTTTCAGCGCCGCGAATCATCGACCATTAAACACAC
ATATGATTATGCCAAACAGGAAGAGGCGGCCCCAGCCTCCAAAGTGGAAG
ATGCGGTATTAACTGCCAAGCCGCCAGTGCCGCAGAAATCAACGACGGTC
AGCCAGGTCGCCAAGAACTTTGCATCTTCCGCCCCAGCGCCTAAGCCCGC
ACCAGCGCCTGCTGTTAGTGTGAAGTCCGGCTTGGTTTCCGGACGGGCGG
CTCTCTTTGAAAACAAGGGAACCGGAGGACAGTCGCAAGGCCTACGCAAC
CAGAAGGATCCTTGTGAGCTGTCGCTGAAGGAGCGGATGAAGCTGTTCGA
AACGGGCAACAACAAAGCGATGTTGCCGATGGCGCCAATAGGATCTGCTC
CCAGTATTACCCAAATCCGAGCGGAAGAGGTGAAACAACATTTAGCTGCA
ATGCATCCGGTGACTGCTGCCGCAGCTACTACCGTGGTTGCAGCAACCAA
GCCGAAACAGGAAAACAAGCTGCGTGACAAGGTGGCCGCTTTGGTGGCAA
ATGCGCAATCAAGTGCAGAGACGCGTATCAAGGACATTGATCGCCAAAGG
CAGGAAGACATGCAGATTATTTCTAATCGCTTTAACAAACAAAAGGAGCT
CTTTGACAATCAACCATCCGATAGTTCTGTGGCTGCTCAAGCTCGACCTC
CCGCGCCAGCTCCCAGCAGAGTAGTGCGGCCCATGCCACCGCCTCCACCA
CCGCCCATCGCTGCTCTCTCGCCCGGACTGGCCAGCAGCAAGAGGCGATC
ACCTGGTGATGCGCCCACCACTGACGAGGATTCGAAGCGAGCCCGCAAAT
CGCATTCGGATCGTCTGTATCCCGCCCTGTCCGACCTCGACTCCAGCGGT
GACAACTGCTGCGCCGCCGAAACTGCCTCCGCTACGGATGACAGCCATCA
ACAGGACGAGGAGGAAACCGAAAGGTGCGCTGAAAAATGCTATTCCTGCT
TGCTATTTCTGCTCTGCATCGAGTAGCATTCCAAGACTGATAGGCCTAAG
AGACATAGCTTTAAACCCCATCCCCTAGACAAGACCAACAATAAAATCGC
TTTCTTAACTAAAAAAAAAAAAAAAAAAA

GH27072.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
scra-RC 2454 scra-RC 56..2317 1..2262 11310 100 Plus
scra.a 4290 scra.a 1..2128 1..2128 10625 99.9 Plus
scra-RB 4523 scra-RB 56..2183 1..2128 10625 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3478280..3479208 658..1586 4585 99.6 Plus
chr2R 21145070 chr2R 3479274..3479639 1587..1952 1815 99.7 Plus
chr2R 21145070 chr2R 3477454..3477796 1..343 1700 99.7 Plus
chr2R 21145070 chr2R 3477900..3478219 341..660 1600 100 Plus
chr2R 21145070 chr2R 3479694..3480005 1949..2260 1545 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:10:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7590945..7591873 658..1586 4645 100 Plus
2R 25286936 2R 7591938..7592303 1587..1952 1830 100 Plus
2R 25286936 2R 7590119..7590461 1..343 1715 100 Plus
2R 25286936 2R 7590565..7590884 341..660 1600 100 Plus
2R 25286936 2R 7592358..7592671 1949..2262 1555 99.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7592144..7593072 658..1586 4645 100 Plus
2R 25260384 2R 7593137..7593502 1587..1952 1830 100 Plus
2R 25260384 2R 7591318..7591660 1..343 1715 100 Plus
2R 25260384 2R 7591764..7592083 341..660 1600 100 Plus
2R 25260384 2R 7593557..7593870 1949..2262 1555 99.6 Plus
Blast to na_te.dros performed on 2019-03-16 17:48:41 has no hits.

GH27072.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 17:49:44 Download gff for GH27072.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3477454..3477796 1..343 99 -> Plus
chr2R 3477903..3478217 344..658 100 -> Plus
chr2R 3478281..3479208 659..1586 99 -> Plus
chr2R 3479274..3479639 1587..1952 99 -> Plus
chr2R 3479698..3480005 1953..2260 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:58:13 Download gff for GH27072.complete
Subject Subject Range Query Range Percent Splice Strand
scra-RC 1..1851 326..2176 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:40:04 Download gff for GH27072.complete
Subject Subject Range Query Range Percent Splice Strand
scra-RC 1..1851 326..2176 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:02:00 Download gff for GH27072.complete
Subject Subject Range Query Range Percent Splice Strand
scra-RC 1..1851 326..2176 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:17:24 Download gff for GH27072.complete
Subject Subject Range Query Range Percent Splice Strand
scra-RC 1..1851 326..2176 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:19:11 Download gff for GH27072.complete
Subject Subject Range Query Range Percent Splice Strand
scra-RC 1..1851 326..2176 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:45:24 Download gff for GH27072.complete
Subject Subject Range Query Range Percent Splice Strand
scra-RC 1..2260 1..2260 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:40:04 Download gff for GH27072.complete
Subject Subject Range Query Range Percent Splice Strand
scra-RC 1..2260 1..2260 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:02:00 Download gff for GH27072.complete
Subject Subject Range Query Range Percent Splice Strand
scra-RC 1..2260 1..2260 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:17:25 Download gff for GH27072.complete
Subject Subject Range Query Range Percent Splice Strand
scra-RC 1..2260 1..2260 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:19:11 Download gff for GH27072.complete
Subject Subject Range Query Range Percent Splice Strand
scra-RC 1..2260 1..2260 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:49:44 Download gff for GH27072.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7590119..7590461 1..343 100 -> Plus
2R 7591938..7592303 1587..1952 100 -> Plus
2R 7590568..7590882 344..658 100 -> Plus
2R 7590946..7591873 659..1586 100 -> Plus
2R 7592362..7592669 1953..2260 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:49:44 Download gff for GH27072.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7590119..7590461 1..343 100 -> Plus
2R 7591938..7592303 1587..1952 100 -> Plus
2R 7590568..7590882 344..658 100 -> Plus
2R 7590946..7591873 659..1586 100 -> Plus
2R 7592362..7592669 1953..2260 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 17:49:44 Download gff for GH27072.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7590119..7590461 1..343 100 -> Plus
2R 7591938..7592303 1587..1952 100 -> Plus
2R 7590568..7590882 344..658 100 -> Plus
2R 7590946..7591873 659..1586 100 -> Plus
2R 7592362..7592669 1953..2260 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:02:00 Download gff for GH27072.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3477624..3477966 1..343 100 -> Plus
arm_2R 3478073..3478387 344..658 100 -> Plus
arm_2R 3478451..3479378 659..1586 100 -> Plus
arm_2R 3479443..3479808 1587..1952 100 -> Plus
arm_2R 3479867..3480174 1953..2260 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:53:03 Download gff for GH27072.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7591767..7592081 344..658 100 -> Plus
2R 7592145..7593072 659..1586 100 -> Plus
2R 7591318..7591660 1..343 100 -> Plus
2R 7593137..7593502 1587..1952 100 -> Plus
2R 7593561..7593868 1953..2260 100   Plus

GH27072.pep Sequence

Translation from 325 to 2175

> GH27072.pep
MDPFTQHMLEKAEQRSRALGISNASKFPLVECSVPSSSATSASGGDAGVL
APRSRSPGGQSAASGGGKVVTLGKATLEASPAKPLRHYTAVNKENLDMGI
EINITTDKPIGVQVEIQEQEVTDDEEQAEGGALNPLLEAEPVNQPLARLR
DTSRSRLQRMGALYSNTDDLSSPIHRTEGQFHVTTGEEEDCGNRSSRQPK
QRLGKLAALADTINQWEDDTSHHEVHRLLEAPPPKPHLSSRRAEKGPAPL
PPKKDEVDEASRTKQLKWDPKVLSSLEAQGFQRRESSTIKHTYDYAKQEE
AAPASKVEDAVLTAKPPVPQKSTTVSQVAKNFASSAPAPKPAPAPAVSVK
SGLVSGRAALFENKGTGGQSQGLRNQKDPCELSLKERMKLFETGNNKAML
PMAPIGSAPSITQIRAEEVKQHLAAMHPVTAAAATTVVAATKPKQENKLR
DKVAALVANAQSSAETRIKDIDRQRQEDMQIISNRFNKQKELFDNQPSDS
SVAAQARPPAPAPSRVVRPMPPPPPPPIAALSPGLASSKRRSPGDAPTTD
EDSKRARKSHSDRLYPALSDLDSSGDNCCAAETASATDDSHQQDEEETER
CAEKCYSCLLFLLCIE*

GH27072.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:12:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13186-PA 1199 GF13186-PA 1..561 1..604 1880 72 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:12:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23289-PA 1210 GG23289-PA 1..577 1..604 2597 88.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21874-PA 1249 GH21874-PA 1..570 1..585 1448 60 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:43:12
Subject Length Description Subject Range Query Range Score Percent Strand
scra-PC 616 CG2092-PC 1..616 1..616 3153 100 Plus
scra-PB 1239 CG2092-PB 1..604 1..604 3066 99.3 Plus
scra-PA 1212 CG2092-PA 1..577 1..604 2893 94.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:12:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20377-PA 1252 GI20377-PA 1..615 1..604 1701 63 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:12:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20018-PA 1224 GL20018-PA 1..585 1..604 1739 64.3 Plus
Dper\GL11187-PA 191 GL11187-PA 24..181 372..542 400 54.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:12:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15234-PB 623 GA15234-PB 1..623 1..616 1983 68.9 Plus
Dpse\GA15234-PC 1250 GA15234-PC 1..611 1..604 1894 67.9 Plus
Dpse\GA15234-PA 1223 GA15234-PA 1..584 1..604 1721 63.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20966-PA 1208 GM20966-PA 1..573 1..603 2539 90.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:12:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15346-PA 719 GD15346-PA 1..417 1..444 2096 91.2 Plus
Dsim\GD10494-PA 930 GD10494-PA 142..477 241..603 1376 86.5 Plus
Dsim\GD10494-PA 930 GD10494-PA 1..140 1..140 588 96.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:12:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22103-PA 1221 GJ22103-PA 1..572 1..604 1644 62.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:12:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10680-PA 1249 GK10680-PA 1..605 1..603 1650 63.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:12:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19135-PA 1210 GE19135-PA 1..575 1..604 2489 89.9 Plus

GH27072.hyp Sequence

Translation from 325 to 2175

> GH27072.hyp
MDPFTQHMLEKAEQRSRALGISNASKFPLVECSVPSSSATSASGGDAGVL
APRSRSPGGQSAASGGGKVVTLGKATLEASPAKPLRHYTAVNKENLDMGI
EINITTDKPIGVQVEIQEQEVTDDEEQAEGGALNPLLEAEPVNQPLARLR
DTSRSRLQRMGALYSNTDDLSSPIHRTEGQFHVTTGEEEDCGNRSSRQPK
QRLGKLAALADTINQWEDDTSHHEVHRLLEAPPPKPHLSSRRAEKGPAPL
PPKKDEVDEASRTKQLKWDPKVLSSLEAQGFQRRESSTIKHTYDYAKQEE
AAPASKVEDAVLTAKPPVPQKSTTVSQVAKNFASSAPAPKPAPAPAVSVK
SGLVSGRAALFENKGTGGQSQGLRNQKDPCELSLKERMKLFETGNNKAML
PMAPIGSAPSITQIRAEEVKQHLAAMHPVTAAAATTVVAATKPKQENKLR
DKVAALVANAQSSAETRIKDIDRQRQEDMQIISNRFNKQKELFDNQPSDS
SVAAQARPPAPAPSRVVRPMPPPPPPPIAALSPGLASSKRRSPGDAPTTD
EDSKRARKSHSDRLYPALSDLDSSGDNCCAAETASATDDSHQQDEEETER
CAEKCYSCLLFLLCIE*

GH27072.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
scra-PC 616 CG2092-PC 1..616 1..616 3153 100 Plus
scra-PB 1239 CG2092-PB 1..604 1..604 3066 99.3 Plus
scra-PA 1212 CG2092-PA 1..577 1..604 2893 94.9 Plus