Clone GH27208 Report

Search the DGRC for GH27208

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:272
Well:8
Vector:pOT2
Associated Gene/TranscriptCG4641-RA
Protein status:GH27208.pep: wuzgold
Preliminary Size:2017
Sequenced Size:2728

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4641 2001-01-01 Release 2 assignment
CG4641 2001-10-10 Blastp of sequenced clone
CG4641 2003-01-01 Sim4 clustering to Release 3
CG4641 2008-04-29 Release 5.5 accounting
CG4641 2008-08-15 Release 5.9 accounting
CG4641 2008-12-18 5.12 accounting

Clone Sequence Records

GH27208.complete Sequence

2728 bp (2728 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060805

> GH27208.complete
AAAAAATATACAATATATATTCAGTATAAGGTTTTTATCAACCTGTTTAC
AACTATTCCCTAAAGACATTTAAATCAAATCTATACATAATATTTTAATA
AAGAAAAGCCCTTGTTCTATGTATATATTTCAATCCTATCGGTTTACACC
TGTAGCTCAGTAGTAGTTATCAGACTGAATTTGGAAAGCAAAGACTTTAT
ATGAAACCCTAGTTTTCTAACGATCTCCTCCCGCATGCTTGTCAACCTCC
AATCTGAATAAATGTAACCGAAAATTATACTTTTGCTAAAGTTTTCAGTT
TTTTTTTTAGTTTCCAATTGCCAAACCTAATCGTGTACTTAGATAGTTTT
TGTTCCAAGGCTGCCTTGGCTTGATCCAAAATATTTTTGGTTTCCTTCTC
ACCGCTCTATAACATTTGGATCGATAAAATTGTATTCATATAAGATATAG
CATTCCGAAAATATGATTGATACTAAGCCAACAAATCTTTTCTCATTTAT
TTTTAACGCATACTCAGTACTCATCCAAGAGCCTGGCATGGAGGACGATC
TCAGTGACGATGGGCAGCCGCCGCCGTCCTTGCCGCCGCCCCAACTAGCG
AAGGCGGGCGGATCCGCTCCTGGATCTGGGAGCAAGGTCGAAAAGGGGGC
GGCGGCAGGTGGCGCCAACACGCTGAACTTAGGTATGGCACAAATAATTG
TTACCGCTGCAACCCCCATGGTTGAAGACGGTGCCGATAAATCTTTCCCA
CCAGTAGGCGAGAGCGATGCACAGCCAGTGGAGCCGGTGTCCAAGGAGCA
GCCGGCGGAAGTGGCCAAAAAGCCAGATATTGCGCCCAAGCCGCTGGCCA
AGGTGGCGCCACAGAGCGCGCCGGCCAAAGAAGGTAATGCTGGAGTGAGG
CCCGTGGTGAGCATTACACTGACCGAGTATCCATCCTGTGATGCAGAGGA
CCAACAGTCCTTCTCGGAGGGCACCGATTCGGCTTCGGTTGCCGATGTGC
CGGTACTGCAGGATGCGGAGGATCCATTCAACGAGAAGGCCAAGGGAGAG
TCCGGCGACGGTTCGGGATTTGAGGCCAATTTTGAGGCCAACTTCGATGC
CAATTTTGATGACGCCTTCGCTGGAATCGGAGGAGGTGGGGGCGGTGGAG
GTGGCGGTGGGGAGCAGTCCAACGAATTGGACATCAACGGAGAGGCAGCA
GGAGAAGCAATAGTATCTGGATCTGCGGCTGGCGATGAGGATATTGAGGC
ACCCAAACAGGTGGTCGGTGGGCGAGCTAGCATACCCGAGGAATTGGACT
CAAATCAATTGGCACGTTTGCAAAATCTGAAGGAGTCGAACGCTTAGATT
CGGAGCTCCGGTCTCTACCTCTTGGTCGGCACTTCAATATTGTTTCTTTT
GTTCTTTTAGGCACACTACCATGAGCATGAAATATACTATGTAGACTATA
GCCACGGACAGTTATAGAGCGGATCAGCGGAACACCACAGCCACAGCCAC
AACCACAACCAAATCCCAAAACACTCGATAGCATTTTGATCTCACACTCA
TCCCACAACCTATCCAACAAATCCAAACACACAGATGATATAGCCAGACT
CAGACGGACTTATCGCAACTTATCGATCGGGTGGCGGATATAGATCATTG
GTTATCCCTTAATTAAAGCAAACAAGATTTGTTTCGGCCGCCCGATTTTA
CATACAACGACACGAATAGCAGGATATAGAATATATGTATGTACTTAAAT
CAGATCGGGATTCCCGCTCCCAACTTCACGTACAGCGCTCAAATTGTGTA
CATCCATTTGAATACTTCTTCTGACTGCCTCTGGGGTTATAGTTAGACAT
CAACTGGGCCTTCATAAACAAAACCACCATACGATATATATTATAACTAT
ATAAATATATACATAATTATGTTAGTTTGTAATGTGTTATAACCTCGGAC
ACGTATGGAATACATTAATATATATATATATATATATATATATATATATA
TAAATGGCATATTGTAACGTTTTGAAAGACAACAATTACTTATGTAGCAC
TCAGACACGGGTCTTCGAATATCAGCATCCACAACTAATCGAGCAATAAT
ATGTATATATATCTAAGTGAATTAGAAAATCCAGTTTAGCAGCATTAAGT
TAGCCATTCGCTTGAACTTGCCGCCGCTAACAAAAGCCAATCAATTTCAA
GGTCAATTCAGTTGGACTTATTTCCCGCTTCTGTTCGCTCCACTTAGTCA
TAGGATCTCTGCACATCTCTGCATAGTAAATTAATCGAAGCCGATGACGA
GCGGATCCGTCAGATATATATTGTTGTAATTGTATGCAAAACACTAGCCT
AATTAGTTAAATGTTTTCCGTGTCTAGTAAAATGGTCTAAGTTAATGTTG
GATGCCAGAAAGAAGATATTTGAAATATTAGTAAAAAAGCCTAATCAATG
CGATACTTTGTTTGCGATACTCGTCGAATAGTAAAGTTCATAACTCACCA
ATTGGATAACTTCATATTCACATAACCGATATTACCGATAACAATGGATA
ACAATGATGAAAACCCAATATATATGTACGTATGTAAGTCGCAAACTGAA
TTGTATGTAATTTTTGACCCCGCCCAGTGAGTTAATCAATGTTTTAAGTC
ATAGTTTACAAAACCTTCTGTTCGAAAAACAAATAACAAATAAAATTTCC
ACCTTAAAGCAAAAAAAAAAAAAAAAAA

GH27208.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:03:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4641-RA 2726 CG4641-RA 1..2720 1..2720 13585 99.9 Plus
CG4641.a 2627 CG4641.a 1..1315 1..1315 6575 100 Plus
CG4641.a 2627 CG4641.a 1311..2621 1410..2720 6540 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9135343..9137517 542..2710 10550 99.2 Plus
chr3L 24539361 chr3L 9134599..9135142 1..544 2630 98.9 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:10:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:50:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9143525..9145703 542..2720 10880 100 Plus
3L 28110227 3L 9142781..9143324 1..544 2720 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:27:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9136625..9138803 542..2720 10880 99.9 Plus
3L 28103327 3L 9135881..9136424 1..544 2720 100 Plus
Blast to na_te.dros performed on 2019-03-15 19:50:16 has no hits.

GH27208.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:51:01 Download gff for GH27208.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9134598..9135141 1..543 98 -> Plus
chr3L 9135345..9137517 544..2710 94   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:58:26 Download gff for GH27208.complete
Subject Subject Range Query Range Percent Splice Strand
CG4641-RA 1..885 463..1347 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:37:41 Download gff for GH27208.complete
Subject Subject Range Query Range Percent Splice Strand
CG4641-RA 1..885 463..1347 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:59:09 Download gff for GH27208.complete
Subject Subject Range Query Range Percent Splice Strand
nwk-RD 2375..3207 515..1347 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:06:34 Download gff for GH27208.complete
Subject Subject Range Query Range Percent Splice Strand
CG4641-RA 1..885 463..1347 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:25:10 Download gff for GH27208.complete
Subject Subject Range Query Range Percent Splice Strand
nwk-RD 2375..3207 515..1347 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:18:26 Download gff for GH27208.complete
Subject Subject Range Query Range Percent Splice Strand
CG4641-RA 1..2710 1..2710 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:37:41 Download gff for GH27208.complete
Subject Subject Range Query Range Percent Splice Strand
CG4641-RA 1..2710 1..2710 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:59:09 Download gff for GH27208.complete
Subject Subject Range Query Range Percent Splice Strand
nwk-RF 2711..5420 1..2710 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:06:35 Download gff for GH27208.complete
Subject Subject Range Query Range Percent Splice Strand
CG4641-RA 1..2710 1..2710 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:25:10 Download gff for GH27208.complete
Subject Subject Range Query Range Percent Splice Strand
nwk-RF 2711..5420 1..2710 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:51:01 Download gff for GH27208.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9142781..9143323 1..543 100 -> Plus
3L 9143527..9145693 544..2710 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:51:01 Download gff for GH27208.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9142781..9143323 1..543 100 -> Plus
3L 9143527..9145693 544..2710 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:51:01 Download gff for GH27208.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9142781..9143323 1..543 100 -> Plus
3L 9143527..9145693 544..2710 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:59:09 Download gff for GH27208.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9135881..9136423 1..543 100 -> Plus
arm_3L 9136627..9138793 544..2710 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:42:36 Download gff for GH27208.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9135881..9136423 1..543 100 -> Plus
3L 9136627..9138793 544..2710 100   Plus

GH27208.hyp Sequence

Translation from 462 to 1346

> GH27208.hyp
MIDTKPTNLFSFIFNAYSVLIQEPGMEDDLSDDGQPPPSLPPPQLAKAGG
SAPGSGSKVEKGAAAGGANTLNLGMAQIIVTAATPMVEDGADKSFPPVGE
SDAQPVEPVSKEQPAEVAKKPDIAPKPLAKVAPQSAPAKEGNAGVRPVVS
ITLTEYPSCDAEDQQSFSEGTDSASVADVPVLQDAEDPFNEKAKGESGDG
SGFEANFEANFDANFDDAFAGIGGGGGGGGGGGEQSNELDINGEAAGEAI
VSGSAAGDEDIEAPKQVVGGRASIPEELDSNQLARLQNLKESNA*

GH27208.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:40:02
Subject Length Description Subject Range Query Range Score Percent Strand
nwk-PK 1049 CG43479-PK 773..1049 18..294 1412 99.6 Plus
nwk-PG 1068 CG43479-PG 793..1068 19..294 1411 100 Plus
nwk-PD 1068 CG43479-PD 793..1068 19..294 1411 100 Plus
nwk-PJ 1056 CG43479-PJ 773..1039 18..284 1364 99.6 Plus
nwk-PI 1075 CG43479-PI 793..1058 19..284 1363 100 Plus

GH27208.pep Sequence

Translation from 462 to 1346

> GH27208.pep
MIDTKPTNLFSFIFNAYSVLIQEPGMEDDLSDDGQPPPSLPPPQLAKAGG
SAPGSGSKVEKGAAAGGANTLNLGMAQIIVTAATPMVEDGADKSFPPVGE
SDAQPVEPVSKEQPAEVAKKPDIAPKPLAKVAPQSAPAKEGNAGVRPVVS
ITLTEYPSCDAEDQQSFSEGTDSASVADVPVLQDAEDPFNEKAKGESGDG
SGFEANFEANFDANFDDAFAGIGGGGGGGGGGGEQSNELDINGEAAGEAI
VSGSAAGDEDIEAPKQVVGGRASIPEELDSNQLARLQNLKESNA*

GH27208.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20135-PA 293 GF20135-PA 41..293 57..294 697 67.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14378-PA 293 GG14378-PA 1..293 1..294 1135 94.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15843-PA 310 GH15843-PA 1..310 9..294 636 61 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
nwk-PK 1049 CG43479-PK 773..1049 18..294 1412 99.6 Plus
nwk-PG 1068 CG43479-PG 793..1068 19..294 1411 100 Plus
nwk-PD 1068 CG43479-PD 793..1068 19..294 1411 100 Plus
nwk-PJ 1056 CG43479-PJ 773..1039 18..284 1364 99.6 Plus
nwk-PI 1075 CG43479-PI 793..1058 19..284 1363 100 Plus
nwk-PL 1031 CG43479-PL 770..1014 19..284 1221 92.1 Plus
nwk-PB 1000 CG43479-PB 770..1000 19..294 1112 83.7 Plus
nwk-PH 1006 CG43479-PH 770..989 19..284 1059 82.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12626-PA 278 GI12626-PA 1..278 26..294 514 56.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18424-PA 282 GL18424-PA 1..282 26..294 741 71.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA29290-PA 307 GA29290-PA 9..307 9..294 811 71.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25122-PA 293 GM25122-PA 1..293 1..294 1404 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14158-PA 293 GD14158-PA 1..293 1..294 1402 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12747-PA 264 GJ12747-PA 1..264 26..294 618 61.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23693-PA 922 GK23693-PA 785..918 18..146 248 60.7 Plus
Dwil\GK23698-PA 38 GK23698-PA 3..38 259..294 180 100 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20809-PA 269 GE20809-PA 1..269 26..294 987 93.3 Plus