GH27221.complete Sequence
675 bp assembled on 2007-02-23
GenBank Submission: BT030405
> GH27221.complete
TATTCAGTAGACATCAGTCGAGCGCAGAAGCTCTTCGTGATAAGACGTCT
TCAATTCAAATTTTTTTTATCGAACACACCATGGAGGGGGACAAGGTAGT
TTTTCATAGTTCTGATCTACCATACGAATATTTATACGACGACGAAAAAC
ACGTTTCGCACATGCCGGATTCCAAATTAAGTGTACGAAATATTTTGGAT
TCAGCTTACGCTTCTGCTGAAGGCAAAATTATAACTAGGAAACTTTCGCG
CAGCATTCCGCCGTATCCGCATGCTGTTCGAGTAAAAAATGGCATTCGTG
TTTATGAATACAGTGAGCCCAGAAAACAGAGCTACAAATCAAGTTTATGG
AAGGAGGCCTACAATATACTCCACCAGCGGTTGGATATTGCCGAGCCAAT
CGCAGCAAAGGAACACGTGAGAACGCAGATACATCCGTGTCTGCACAAGA
TCAAAGGACTTCTAGATCCGGAAACCTGCATCAAGTGTCCGCGGTGTCAT
AAGTCCATTTCGTCCACCAAAGTTGTGAAAAGCTTTGCATAGTGACGAAT
GCAAGCCACCTTCAACATATATATCTATTATAGAGGTTCAATATATGCTC
AAATCAACACATGCATTTATATATATATATAATATAAACAAAGAATGCAA
CAGCCCTAAAAAAAAAAAAAAAAAA
GH27221.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 20:48:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31955-RA | 932 | CG31955-RA | 203..860 | 1..658 | 3290 | 100 | Plus |
CG31955.a | 947 | CG31955.a | 1..658 | 1..658 | 3290 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:53:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 3712014..3712378 | 365..1 | 1765 | 98.9 | Minus |
chr2L | 23010047 | chr2L | 3711670..3711961 | 657..366 | 1445 | 99.7 | Minus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:10:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3712498..3712862 | 365..1 | 1825 | 100 | Minus |
2L | 23513712 | 2L | 3712153..3712445 | 658..366 | 1465 | 100 | Minus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3712498..3712862 | 365..1 | 1825 | 100 | Minus |
2L | 23513712 | 2L | 3712153..3712445 | 658..366 | 1465 | 100 | Minus |
Blast to na_te.dros performed on 2019-03-16 18:53:58 has no hits.
GH27221.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:55:15 Download gff for
GH27221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 3711670..3711961 | 366..657 | 91 | <- | Minus |
chr2L | 3712014..3712378 | 1..365 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:58:28 Download gff for
GH27221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31955-RA | 1..462 | 81..542 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:43:32 Download gff for
GH27221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31955-RA | 1..462 | 81..542 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:18:48 Download gff for
GH27221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31955-RA | 1..462 | 81..542 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:24:13 Download gff for
GH27221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31955-RA | 1..462 | 81..542 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:04 Download gff for
GH27221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31955-RA | 1..462 | 81..542 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:51:15 Download gff for
GH27221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31955-RA | 1..655 | 1..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:43:31 Download gff for
GH27221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31955-RA | 1..657 | 1..657 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:18:48 Download gff for
GH27221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31955-RA | 5..661 | 1..657 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:24:13 Download gff for
GH27221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31955-RA | 1..655 | 1..655 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:04 Download gff for
GH27221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31955-RA | 5..661 | 1..657 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:55:15 Download gff for
GH27221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3712154..3712445 | 366..657 | 100 | <- | Minus |
2L | 3712498..3712862 | 1..365 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:55:15 Download gff for
GH27221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3712154..3712445 | 366..657 | 100 | <- | Minus |
2L | 3712498..3712862 | 1..365 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:55:15 Download gff for
GH27221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3712154..3712445 | 366..657 | 100 | <- | Minus |
2L | 3712498..3712862 | 1..365 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:18:48 Download gff for
GH27221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3712154..3712445 | 366..657 | 100 | <- | Minus |
arm_2L | 3712498..3712862 | 1..365 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:57:15 Download gff for
GH27221.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3712154..3712445 | 366..657 | 100 | <- | Minus |
2L | 3712498..3712862 | 1..365 | 100 | | Minus |
GH27221.hyp Sequence
Translation from 2 to 541
> GH27221.hyp
FSRHQSSAEALRDKTSSIQIFFIEHTMEGDKVVFHSSDLPYEYLYDDEKH
VSHMPDSKLSVRNILDSAYASAEGKIITRKLSRSIPPYPHAVRVKNGIRV
YEYSEPRKQSYKSSLWKEAYNILHQRLDIAEPIAAKEHVRTQIHPCLHKI
KGLLDPETCIKCPRCHKSISSTKVVKSFA*
GH27221.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:40:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31955-PD | 153 | CG31955-PD | 1..153 | 27..179 | 810 | 100 | Plus |
CG31955-PC | 153 | CG31955-PC | 1..153 | 27..179 | 810 | 100 | Plus |
CG31955-PA | 153 | CG31955-PA | 1..153 | 27..179 | 810 | 100 | Plus |
CG31955-PB | 63 | CG31955-PB | 2..63 | 118..179 | 312 | 95.2 | Plus |
GH27221.pep Sequence
Translation from 80 to 541
> GH27221.pep
MEGDKVVFHSSDLPYEYLYDDEKHVSHMPDSKLSVRNILDSAYASAEGKI
ITRKLSRSIPPYPHAVRVKNGIRVYEYSEPRKQSYKSSLWKEAYNILHQR
LDIAEPIAAKEHVRTQIHPCLHKIKGLLDPETCIKCPRCHKSISSTKVVK
SFA*
GH27221.pep Blast Records
Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:29:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dana\GF19681-PA | 152 | GF19681-PA | 1..152 | 1..152 | 247 | 40.1 | Plus |
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:29:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG24403-PA | 152 | GG24403-PA | 1..152 | 1..153 | 494 | 62.1 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:56:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31955-PD | 153 | CG31955-PD | 1..153 | 1..153 | 810 | 100 | Plus |
CG31955-PC | 153 | CG31955-PC | 1..153 | 1..153 | 810 | 100 | Plus |
CG31955-PA | 153 | CG31955-PA | 1..153 | 1..153 | 810 | 100 | Plus |
CG31955-PB | 63 | CG31955-PB | 2..63 | 92..153 | 312 | 95.2 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:29:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM18120-PA | 151 | GM18120-PA | 1..151 | 1..151 | 710 | 88.1 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:29:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD22728-PA | 152 | GD22728-PA | 1..151 | 1..151 | 695 | 86.1 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE14797-PA | 152 | GE14797-PA | 1..150 | 1..150 | 527 | 66.7 | Plus |