Clone GH27237 Report

Search the DGRC for GH27237

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:272
Well:37
Vector:pOT2
Associated Gene/TranscriptCG12056-RA
Protein status:GH27237.pep: gold
Preliminary Size:1110
Sequenced Size:976

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12056 2001-01-01 Release 2 assignment
CG12056 2001-11-09 Blastp of sequenced clone
CG12056 2003-01-01 Sim4 clustering to Release 3
CG12056 2008-04-29 Release 5.5 accounting
CG12056 2008-08-15 Release 5.9 accounting
CG12056 2008-12-18 5.12 accounting

Clone Sequence Records

GH27237.complete Sequence

976 bp (976 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069225

> GH27237.complete
TTAAACGGCAAGATGTTCGGATTGCTGCGACACCTGTTCAAATTTCAATT
TCTTTTCGTTGTGGCAGCCGTTCTGGGCGGAATTTATCACACAGAGATTA
GGCAGTTCCTGCGTCGCCAAACGGACAACTACCTGGACCAAGCTGGGCAG
GATGCGAGCATTCCCCTGGCGTTCCAAGCTGGTGACGATATCGGCACGCT
CTTTACACCGGCCGAGTTGGCCAAATTCAATGGCGAGGAAGAGGGTCGTC
CGCTTTACCTGGCTCTACTCGGTTCCGTCTTCGATGTGAGCCGCGGCATT
AAGCATTACGGATCCGGCTGCAGCTACAACTTCTTCGTGGGTCGCGACGC
CTCCGTATCCTTCATTTCCGGTGATTTTGAGACGTACGATCCGGAAACGG
CCGACGATGTGTTAACCCTAAAGCCGGACGACCTGATTGGTTTGGCCGGA
TGGCGGGATTTCTATCAAAAGGACTACGTCTACAAGGGACGGGTAATTGG
GCGCTTCTACGATGAGAAGGGCGCCCTGACCACCTATCATCATAAGTTTC
TGGAGCTGCTGGAGCAGGCACGAGATGCCAAGCGACAGGTGGAGGAGCTG
CGTGCCCGGTATCCCGGCTGCAATATCGAGTGGAGCGAGGAGCGCGGCAC
TCGCGTCTGGTGCACCACGACCAGTGGCGATGGCAAGGAGCGCTCCTGGA
TCGGTTATCCGCGCAAGCTGTACAGTCGCGGCAACAAGAGTTTCCAGTGC
GCCTGTGTGCCGGATGCGGAGCTGGACGAGATCGATGCCGGCGGCAAGGT
GGCTCACGGTGATGCCATGCTGAAACCCTACGACAATTGCGAGCCACAGG
CCAGGGAGTGCTTCTACAGGGTGTAGCAGCAGGGCCGGGATTTGTAAATA
GTAATTAGTGCATTTGGATCAATAAATTATTAGGTGGAGTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA

GH27237.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:00:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG12056-RA 959 CG12056-RA 12..954 1..943 4715 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 9084485..9085425 1..941 4600 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:10:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9192680..9193622 1..943 4715 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 9200778..9201720 1..943 4715 100 Plus
Blast to na_te.dros performed on 2019-03-16 03:42:45 has no hits.

GH27237.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:43:25 Download gff for GH27237.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 9084485..9085425 1..941 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:58:32 Download gff for GH27237.complete
Subject Subject Range Query Range Percent Splice Strand
CG12056-RA 1..864 13..876 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:33:43 Download gff for GH27237.complete
Subject Subject Range Query Range Percent Splice Strand
CG12056-RA 1..864 13..876 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:02:38 Download gff for GH27237.complete
Subject Subject Range Query Range Percent Splice Strand
CG12056-RA 1..864 13..876 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:01:18 Download gff for GH27237.complete
Subject Subject Range Query Range Percent Splice Strand
CG12056-RA 1..864 13..876 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:12:50 Download gff for GH27237.complete
Subject Subject Range Query Range Percent Splice Strand
CG12056-RA 1..864 13..876 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:12:55 Download gff for GH27237.complete
Subject Subject Range Query Range Percent Splice Strand
CG12056-RA 12..952 1..941 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:33:43 Download gff for GH27237.complete
Subject Subject Range Query Range Percent Splice Strand
CG12056-RA 12..952 1..941 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:02:38 Download gff for GH27237.complete
Subject Subject Range Query Range Percent Splice Strand
CG12056-RA 12..952 1..941 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:01:18 Download gff for GH27237.complete
Subject Subject Range Query Range Percent Splice Strand
CG12056-RA 12..952 1..941 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:12:50 Download gff for GH27237.complete
Subject Subject Range Query Range Percent Splice Strand
CG12056-RA 12..952 1..941 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:25 Download gff for GH27237.complete
Subject Subject Range Query Range Percent Splice Strand
X 9192680..9193620 1..941 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:25 Download gff for GH27237.complete
Subject Subject Range Query Range Percent Splice Strand
X 9192680..9193620 1..941 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:43:25 Download gff for GH27237.complete
Subject Subject Range Query Range Percent Splice Strand
X 9192680..9193620 1..941 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:02:38 Download gff for GH27237.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 9086713..9087653 1..941 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:38:10 Download gff for GH27237.complete
Subject Subject Range Query Range Percent Splice Strand
X 9200778..9201718 1..941 100   Plus

GH27237.hyp Sequence

Translation from 0 to 875

> GH27237.hyp
LNGKMFGLLRHLFKFQFLFVVAAVLGGIYHTEIRQFLRRQTDNYLDQAGQ
DASIPLAFQAGDDIGTLFTPAELAKFNGEEEGRPLYLALLGSVFDVSRGI
KHYGSGCSYNFFVGRDASVSFISGDFETYDPETADDVLTLKPDDLIGLAG
WRDFYQKDYVYKGRVIGRFYDEKGALTTYHHKFLELLEQARDAKRQVEEL
RARYPGCNIEWSEERGTRVWCTTTSGDGKERSWIGYPRKLYSRGNKSFQC
ACVPDAELDEIDAGGKVAHGDAMLKPYDNCEPQARECFYRV*

GH27237.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:40:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG12056-PA 287 CG12056-PA 1..287 5..291 1546 100 Plus

GH27237.pep Sequence

Translation from 12 to 875

> GH27237.pep
MFGLLRHLFKFQFLFVVAAVLGGIYHTEIRQFLRRQTDNYLDQAGQDASI
PLAFQAGDDIGTLFTPAELAKFNGEEEGRPLYLALLGSVFDVSRGIKHYG
SGCSYNFFVGRDASVSFISGDFETYDPETADDVLTLKPDDLIGLAGWRDF
YQKDYVYKGRVIGRFYDEKGALTTYHHKFLELLEQARDAKRQVEELRARY
PGCNIEWSEERGTRVWCTTTSGDGKERSWIGYPRKLYSRGNKSFQCACVP
DAELDEIDAGGKVAHGDAMLKPYDNCEPQARECFYRV*

GH27237.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:26:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22317-PA 284 GF22317-PA 1..284 1..287 1236 78.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:26:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18296-PA 287 GG18296-PA 1..287 1..287 1454 93.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17751-PA 281 GH17751-PA 1..281 1..287 901 58 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG12056-PA 287 CG12056-PA 1..287 1..287 1546 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:26:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15505-PA 277 GI15505-PA 1..277 1..287 918 60.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20204-PA 288 GL20204-PA 181..288 180..287 473 74.1 Plus
Dper\GL20204-PA 288 GL20204-PA 1..81 1..82 213 49.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:26:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11364-PA 286 GA11364-PA 1..286 1..287 1124 68.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:26:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13728-PA 242 GM13728-PA 1..242 1..287 1194 80.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:26:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19265-PA 277 GJ19265-PA 1..277 1..287 914 58.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25798-PA 290 GK25798-PA 1..290 1..287 1001 64 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:26:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15830-PA 286 GE15830-PA 1..286 1..287 1462 95.5 Plus