Clone GH27263 Report

Search the DGRC for GH27263

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:272
Well:63
Vector:pOT2
Associated Gene/TranscriptCG9109-RB
Protein status:GH27263.pep: wuzgold
Preliminary Size:2218
Sequenced Size:2227

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9109 2001-01-01 Release 2 assignment
CG9109 2001-09-19 Blastp of sequenced clone
CG9109 2003-01-01 Sim4 clustering to Release 3
CG9109 2008-04-29 Release 5.5 accounting
CG9109 2008-08-15 Release 5.9 accounting
CG9109 2008-12-18 5.12 accounting

Clone Sequence Records

GH27263.complete Sequence

2227 bp (2227 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060349

> GH27263.complete
GGACAGACGTGTTCCGATTTCCGGTAGGAAAAGGGCAGGTGTTTGTAAAA
TATCAGGAAATGCGTTCGGAACTCTTAGAGTTCCGCAATAGATATTAGTT
ATGCCTACTAGGATATGTGTGCTGTTTGGGCTTCTGTGCCTCGCAAGCTT
ATGCTGCGGTAGTAACAAGCCAGGAGAGGTGCTCCTGGTTATCGCCTGTC
CCCCGCATCCTCAGCAGGCCAGAAGTGATTGTTTAGCCTTATCGCACAAC
GTGCTGGAGCAGCAACGGGCACTGGAACTGGCGGGGATCTTCCCCGAGGA
CTTTGTCCTGAAGGTCCATGTGATGCATGAGCTCTTTAACTCCTGGACCA
TGCTGGACGCACTGCCTCATCTAAGAGCCCAGGCACGTGTGCTGGGTGCG
CGCACGGAATGGATTATATGGTGTCAACACAACACGCGTGTGTCTTCGTT
GCGCGGCCTGCTCGAGCAACTGCGTCGCCAGAACCCAAGGGAGCTAGCTT
TCTATGGGCACGCCCTTTACGATGCGGAGGCAACCATCATCCACCACTTC
TCGAACTACAAGGATCCCCAGCGGTTTCCATATCCCATGCTCAGTGCCGG
AGTCGTTTTCACTGGTGCTCTGTTGCGAAGGTTGGCGGATCTGGTTGCTC
CTAGTGGCCAAAACATCACCGTTCACAGCGATTTCTCCATTGATGCCTCT
CACGAGCTGGCTCGCTTTATTTTCGACAATGTATCGCCCGACCCGCATAT
TAGCACCCCGATTTCCGGAGGAATCCTGCTGAAAAGTGCCAGCTACATAT
GTTCCACACCCACGTCCGTGCCAAACAGGAAACTGCCTTGTCTGCTGCAT
GCGCAGCCGGAGGAGCCACTGACTTTGGGGCAGCGGAGAAATGGCTGTGT
AAGTTTATTTATGCCTGGCATGCCTTGTTGCAGCAAAATCATATATCATG
CTAAGGGGCTTTTGATTAAGATGAGGTATTTGCAAAAATGTCAAAATTTC
GTTATTTTGCATGAATGTTTTTAAGTTTACCTGTTTGTACTATTCAGTAC
TATTTTTTGAGACACCTGTGTTTGAGATATGCTTATCTAAAAACGGACAG
CAAACCTTTAAATCAAAGTTCATTGAGTGCTTAAAATTTAAAACCCACAT
ACATATAGATAGCAGATTCAAGATTCAGCCCGAGCAATTAGCATTTGAAA
CCTCCATAACCATAAATTGTCTATCGACCCCGAACTGAAACCCTCCGTTT
CCGCAACTGCCGTATTTTGGCCACCCCAAAACCGGACGAGCAGGAGCACA
CAACAGGATCGCATATATACTTCGCCATCAAAACCTGTGCGAAATTCCAC
AAGGAACGCATACCAATCATCGAGCGCACCTGGGCAGCCGACGCCCGGAA
CAGGAGATACTACAGCGATGTGGCAGACGTCGGCATTCCGGCAATCGGCA
CTGGGATACCCAATGTGCAGACTGGACACTGTGCCAAGACAATGGCCATT
CTGCAATTATCCCTCAAGGACATCGGCAAGCAATTGGACATCCGCTGGCT
TATGCTCGTCGATGATGACACGCTGCTGAGTGTGCCACGCGTGAGCGCCC
TCCTCTGCCGCCACAATGCCACGGAGCTGGTGTACCTGGGCCAGCGCTAT
GGCTACCGGCTACACGCTCCCGACGGCTTCAACTACCACACTGGAGGAGC
CGGCATCGTGCTCAGCCTGCCGCTGGTGCGGCTCATCGTGCAGCGCTGCA
GTTGTCCCAGTGCCAGTGCCCCCGACGACATGATCCTGGGCTACTGCCTC
CAAGCGCTGGGCGTGCCGGCGATACACGTTGCCGGAATGCATCAGGCTAG
GCCGCAGGACTATGCCGGCGAACTGCTGCAACTGCATGCGCCGCTGACCT
TCCACAAGTTCTGGAACACGGATCCGGAGCACACCTACCGCCGCTGGCTC
GGTGGCAGCATGGTCAACCGAAGTGCCCCGCTGGCAGCACACAAGGAGCA
GCCCGCTGCCGGACCACTCCACATGACGATGGGGCGACATTCCTTGGCCG
CAGGCGTTGGATTGCTGCAGCAAACGGGACTGGGCAAGCACCTGGATCTC
TGAGCCGCTCTGAGGTGAGTGGGTTTAATGACTAGACACATCCAATGCAG
TGCGGCACACTTAAAATTTATTTGTAAAAATTCTTGAAAATTAAAGAGAA
ATATAAAAAAAAAAAAAAAAAAAAAAA

GH27263.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9109-RB 2226 CG9109-RB 23..2226 1..2204 11020 100 Plus
CG9109-RA 1831 CG9109-RA 921..1831 1294..2204 4555 100 Plus
CG9109-RA 1831 CG9109-RA 23..921 1..899 4495 100 Plus
CG9109.a 1911 CG9109.a 91..989 1..899 4495 100 Plus
CG9109.a 1911 CG9109.a 1307..1842 1579..2114 2680 100 Plus
CG9109.a 1911 CG9109.a 989..1275 1294..1580 1435 100 Plus
CG9109.a 1911 CG9109.a 1842..1911 2123..2192 350 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6031845..6032642 1426..629 3990 100 Minus
chr2L 23010047 chr2L 6030335..6030879 2123..1579 2725 100 Minus
chr2L 23010047 chr2L 6032982..6033474 493..1 2465 100 Minus
chr2L 23010047 chr2L 6031375..6031531 1580..1424 785 100 Minus
chr2L 23010047 chr2L 6032788..6032928 632..492 705 100 Minus
chr2L 23010047 chr2L 6024921..6025002 2204..2123 410 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:10:31 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6032794..6033591 1426..629 3990 100 Minus
2L 23513712 2L 6031284..6031828 2123..1579 2725 100 Minus
2L 23513712 2L 6033931..6034423 493..1 2465 100 Minus
2L 23513712 2L 6032324..6032480 1580..1424 785 100 Minus
2L 23513712 2L 6033737..6033877 632..492 705 100 Minus
2L 23513712 2L 6025862..6025951 2212..2123 450 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6032794..6033591 1426..629 3990 100 Minus
2L 23513712 2L 6031284..6031828 2123..1579 2725 100 Minus
2L 23513712 2L 6033931..6034423 493..1 2465 100 Minus
2L 23513712 2L 6032324..6032480 1580..1424 785 100 Minus
2L 23513712 2L 6033737..6033877 632..492 705 100 Minus
2L 23513712 2L 6025862..6025951 2212..2123 450 100 Minus
Blast to na_te.dros performed 2019-03-15 22:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
Transpac 5249 Transpac 5249bp Derived from AF222049 (AF222049.1) (Rel. 62, Last updated, Version 1). 3794..3840 2157..2204 120 75 Plus

GH27263.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:06:37 Download gff for GH27263.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6024921..6025001 2124..2204 100 <- Minus
chr2L 6030335..6030877 1581..2123 100 <- Minus
chr2L 6031375..6031528 1427..1580 100 <- Minus
chr2L 6031845..6032640 631..1426 100 <- Minus
chr2L 6032790..6032926 494..630 100 <- Minus
chr2L 6032982..6033474 1..493 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:58:34 Download gff for GH27263.complete
Subject Subject Range Query Range Percent Splice Strand
CG9109-RB 1..924 101..1024 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:04:56 Download gff for GH27263.complete
Subject Subject Range Query Range Percent Splice Strand
CG9109-RB 1..924 101..1024 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:07:49 Download gff for GH27263.complete
Subject Subject Range Query Range Percent Splice Strand
CG9109-RA 1..798 101..898 100 == Plus
CG9109-RA 799..1608 1294..2103 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:35:38 Download gff for GH27263.complete
Subject Subject Range Query Range Percent Splice Strand
CG9109-RB 1..924 101..1024 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:11:17 Download gff for GH27263.complete
Subject Subject Range Query Range Percent Splice Strand
CG9109-RA 1..798 101..898 100 == Plus
CG9109-RA 799..1608 1294..2103 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:54:13 Download gff for GH27263.complete
Subject Subject Range Query Range Percent Splice Strand
CG9109-RB 1..2204 1..2204 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:04:56 Download gff for GH27263.complete
Subject Subject Range Query Range Percent Splice Strand
CG9109-RB 1..2204 1..2204 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:07:49 Download gff for GH27263.complete
Subject Subject Range Query Range Percent Splice Strand
CG9109-RA 1..898 1..898 100 == Plus
CG9109-RA 899..1809 1294..2204 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:35:39 Download gff for GH27263.complete
Subject Subject Range Query Range Percent Splice Strand
CG9109-RB 1..2204 1..2204 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:11:17 Download gff for GH27263.complete
Subject Subject Range Query Range Percent Splice Strand
CG9109-RA 1..898 1..898 100 == Plus
CG9109-RA 899..1809 1294..2204 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:37 Download gff for GH27263.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6025870..6025950 2124..2204 100 <- Minus
2L 6031284..6031826 1581..2123 100 <- Minus
2L 6032324..6032477 1427..1580 100 <- Minus
2L 6032794..6033589 631..1426 100 <- Minus
2L 6033739..6033875 494..630 100 <- Minus
2L 6033931..6034423 1..493 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:37 Download gff for GH27263.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6025870..6025950 2124..2204 100 <- Minus
2L 6031284..6031826 1581..2123 100 <- Minus
2L 6032324..6032477 1427..1580 100 <- Minus
2L 6032794..6033589 631..1426 100 <- Minus
2L 6033739..6033875 494..630 100 <- Minus
2L 6033931..6034423 1..493 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:06:37 Download gff for GH27263.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6025870..6025950 2124..2204 100 <- Minus
2L 6031284..6031826 1581..2123 100 <- Minus
2L 6032324..6032477 1427..1580 100 <- Minus
2L 6032794..6033589 631..1426 100 <- Minus
2L 6033739..6033875 494..630 100 <- Minus
2L 6033931..6034423 1..493 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:07:49 Download gff for GH27263.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6025870..6025950 2124..2204 100 <- Minus
arm_2L 6031284..6031826 1581..2123 100 <- Minus
arm_2L 6032324..6032477 1427..1580 100 <- Minus
arm_2L 6032794..6033589 631..1426 100 <- Minus
arm_2L 6033739..6033875 494..630 100 <- Minus
arm_2L 6033931..6034423 1..493 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:12:36 Download gff for GH27263.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6025870..6025950 2124..2204 100 <- Minus
2L 6031284..6031826 1581..2123 100 <- Minus
2L 6032324..6032477 1427..1580 100 <- Minus
2L 6032794..6033589 631..1426 100 <- Minus
2L 6033739..6033875 494..630 100 <- Minus
2L 6033931..6034423 1..493 100   Minus

GH27263.hyp Sequence

Translation from 100 to 1023

> GH27263.hyp
MPTRICVLFGLLCLASLCCGSNKPGEVLLVIACPPHPQQARSDCLALSHN
VLEQQRALELAGIFPEDFVLKVHVMHELFNSWTMLDALPHLRAQARVLGA
RTEWIIWCQHNTRVSSLRGLLEQLRRQNPRELAFYGHALYDAEATIIHHF
SNYKDPQRFPYPMLSAGVVFTGALLRRLADLVAPSGQNITVHSDFSIDAS
HELARFIFDNVSPDPHISTPISGGILLKSASYICSTPTSVPNRKLPCLLH
AQPEEPLTLGQRRNGCVSLFMPGMPCCSKIIYHAKGLLIKMRYLQKCQNF
VILHECF*

GH27263.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:40:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG9109-PA 535 CG9109-PA 1..266 1..266 1414 100 Plus
CG9109-PC 546 CG9109-PC 1..266 1..266 1414 100 Plus

GH27263.pep Sequence

Translation from 100 to 1023

> GH27263.pep
MPTRICVLFGLLCLASLCCGSNKPGEVLLVIACPPHPQQARSDCLALSHN
VLEQQRALELAGIFPEDFVLKVHVMHELFNSWTMLDALPHLRAQARVLGA
RTEWIIWCQHNTRVSSLRGLLEQLRRQNPRELAFYGHALYDAEATIIHHF
SNYKDPQRFPYPMLSAGVVFTGALLRRLADLVAPSGQNITVHSDFSIDAS
HELARFIFDNVSPDPHISTPISGGILLKSASYICSTPTSVPNRKLPCLLH
AQPEEPLTLGQRRNGCVSLFMPGMPCCSKIIYHAKGLLIKMRYLQKCQNF
VILHECF*

GH27263.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14284-PA 549 GF14284-PA 7..282 7..266 801 56.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10148-PA 536 GG10148-PA 1..267 1..267 1162 84.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10709-PA 513 GH10709-PA 1..182 75..234 576 60.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9109-PC 546 CG9109-PC 1..266 1..266 1414 100 Plus
CG9109-PA 535 CG9109-PA 1..266 1..266 1414 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:49:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11290-PA 556 GI11290-PA 24..281 39..254 627 49.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19087-PA 226 GL19087-PA 1..190 98..266 558 60 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:49:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21549-PA 560 GA21549-PA 1..289 1..265 758 55.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17972-PA 535 GM17972-PA 1..266 1..266 1294 91.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:49:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22608-PA 513 GD22608-PA 37..244 59..266 1064 95.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12483-PA 576 GJ12483-PA 19..295 17..254 664 49.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15400-PA 588 GK15400-PA 23..295 26..259 728 53.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:49:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18956-PA 536 GE18956-PA 1..267 1..266 1167 85 Plus