Clone GH27361 Report

Search the DGRC for GH27361

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:273
Well:61
Vector:pOT2
Associated Gene/TranscriptCG7497-RB
Protein status:GH27361.pep: gold
Preliminary Size:1879
Sequenced Size:1691

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7497 2001-01-01 Release 2 assignment
CG7497 2001-09-19 Blastp of sequenced clone
CG7497 2003-01-01 Sim4 clustering to Release 3
CG7497 2008-04-29 Release 5.5 accounting
CG7497 2008-08-15 Release 5.9 accounting
CG7497 2008-12-18 5.12 accounting

Clone Sequence Records

GH27361.complete Sequence

1691 bp (1691 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058468

> GH27361.complete
ACTGCGGACGCGCTCCTCGGATCGAATCGAATCGCCTTCGAATTGGTCGG
TCGTTGGTTGATCAAGTGTCGCGTGCGCTAATCATTAATTAAGTGTCTTA
GGAAAAAAGTCCCAATTTGGCTATCGAAACGGGTTTCCATCTACCAGTGC
ATTTGCGAGCTGCCTTGCCTTTGCGGCAGGCTCATTTATGAAAAAGAAAT
ATCGTTTGCGGCCAGTTAGATTTTCACCTGAATCACCTGCAATCGAACGC
AATTATCATACCGGCAAAATGGAAACCACAACACCTGTGCTCGACCTGTT
GATGCCGCACAACTCAACTACTGTGGCGCCTCCGAAAGCGCTCTATGCAA
ATCGAAATCGCCTGATTATTGGTGTTATTATCATGGTTCTGGGCGTTTTT
GGCAATTCGCTGGCCCTTTTCATTTTGGCGCGCAAGAAGCTCAACAAAAA
CAGCAAATACACGCTCATGCTGCGATGCCTGGCGACCAACAATCTGGTGG
CTCTACTGGGCATGCTGACCACGACGCTGCTGAAAATGTATCTCTCAAAG
GAAGTCCTGCAGTCGTTCATCCGAGTGGATTGCGTGGGACTCGTGGTTTG
GCGATTTTTCGGGCTCAGTTCTGGATGCATTGCAGCAGTTATGGCGGCAG
AAAGATGGATGGCCCTAGCCAGACCCTTTATCTACCACAAGCACATTACC
TACGAGCTCATTCGCAAGAGCATCAACAGCATTCTGATGATCGCCGTGGT
GATCACGTTCCTGCCATTCGTTGGTTTTGGTGCATACATCGATGAATCCA
ATCCGGACCAGCTTAAGTGTATACGATATCGCGATGCGCCGGGCGTGTGG
AACAAGACGTATGCGGTGCTCTTTATGGTCTTCGGTACCCTGCTGTGCAT
TGTAATCGTGGCCTGCAACCTCTTCGTGGCCCACACCTTGCTCTGTGTGA
TCGGAAGGAGTCGCACGGCCAAGCGGCATATGCACTACGACCTGGTTTCC
AGGGACAAAAACAGTGCCATCAGCATCGATCCCGAGAGCAGCAGCGGCAC
CACCCTCTACCAGACGCAGCTGAGCACCGGAAGCGGAAACAGCCATCGCA
GTGTACAGCCGGCAAGGCAGTACAGGCACAGCGTTAGCGTCACAATGGCG
GCCACCGACTCCTCGCCAGTCGAGATCAAGTTCGCCAAACTAATGGCGTT
CCTCAGCATCTCGTTCGTCATCTGCTGGATGCCACAGATGATCGCCATCC
CGTTGGCTATAGCTCCAAATCGGGTGCCCGCATCGAACAAGTTCTTCATC
ATCGCCGATGTTCTTACGGCGCTGCACTTCACCTCGGATCCGTATGTCTA
TGTGCTGAGTCGCTCCAAGTCCATCAACTGGTCCTTGCTGGGATGCATTA
AGCGCTGGAGGAGCGGATGGCGTCCGGGCGGACTTCGTCGTTCCCAGAGC
GACCAGAGCCGCATGCGTACGACGATGACGGAGGCGAATACTCTGGAATT
CAACTGATTCCACTCGATCTTCATACCGCGCGCCCCCAAGTACTTAATCC
CATTTCCCGACTCAGTGGGATCTCACTCAAAAAAGCGTTTCCGCCTCCCT
CGGAGCATTCCTGGGAGTAGCGCCTAGTCTCGTAAGCTGTAAATAATAAA
TATATCCCACTTCGTATCTTACTAAAAAAAAAAAAAAAAAA

GH27361.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG7497-RB 1987 CG7497-RB 162..1835 1..1674 8370 100 Plus
CG7497.a 2178 CG7497.a 379..2052 1..1674 8370 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 17623053..17623526 1..474 2370 100 Plus
chr3L 24539361 chr3L 17627023..17627456 1240..1673 2155 99.8 Plus
chr3L 24539361 chr3L 17626526..17626882 884..1240 1785 100 Plus
chr3L 24539361 chr3L 17625899..17626116 474..691 1090 100 Plus
chr3L 24539361 chr3L 17626272..17626469 690..887 975 99.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:10:37 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:11:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17633472..17633945 1..474 2370 100 Plus
3L 28110227 3L 17637442..17637876 1240..1674 2175 100 Plus
3L 28110227 3L 17636945..17637301 884..1240 1785 100 Plus
3L 28110227 3L 17636318..17636535 474..691 1090 100 Plus
3L 28110227 3L 17636691..17636888 690..887 990 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 17626572..17627045 1..474 2370 100 Plus
3L 28103327 3L 17630542..17630976 1240..1674 2175 100 Plus
3L 28103327 3L 17630045..17630401 884..1240 1785 100 Plus
3L 28103327 3L 17629418..17629635 474..691 1090 100 Plus
3L 28103327 3L 17629791..17629988 690..887 990 100 Plus
Blast to na_te.dros performed 2019-03-16 02:11:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dsub\bilbo 5540 Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). 2733..2792 580..519 125 69.4 Minus

GH27361.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:13:03 Download gff for GH27361.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 17623053..17623526 1..474 100 -> Plus
chr3L 17625900..17626116 475..691 100 -> Plus
chr3L 17626274..17626466 692..884 99 -> Plus
chr3L 17626527..17626882 885..1240 100 -> Plus
chr3L 17627024..17627456 1241..1673 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:58:40 Download gff for GH27361.complete
Subject Subject Range Query Range Percent Splice Strand
CG7497-RB 1..1239 269..1507 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:04:58 Download gff for GH27361.complete
Subject Subject Range Query Range Percent Splice Strand
CG7497-RB 1..1239 269..1507 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:16:32 Download gff for GH27361.complete
Subject Subject Range Query Range Percent Splice Strand
CG7497-RB 1..1239 269..1507 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:35:41 Download gff for GH27361.complete
Subject Subject Range Query Range Percent Splice Strand
CG7497-RA 1..1320 188..1507 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:00:28 Download gff for GH27361.complete
Subject Subject Range Query Range Percent Splice Strand
CG7497-RB 1..1239 269..1507 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:54:16 Download gff for GH27361.complete
Subject Subject Range Query Range Percent Splice Strand
CG7497-RB 24..1696 1..1673 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:04:58 Download gff for GH27361.complete
Subject Subject Range Query Range Percent Splice Strand
CG7497-RB 24..1696 1..1673 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:16:32 Download gff for GH27361.complete
Subject Subject Range Query Range Percent Splice Strand
CG7497-RB 24..1696 1..1673 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:35:41 Download gff for GH27361.complete
Subject Subject Range Query Range Percent Splice Strand
CG7497-RA 24..1696 1..1673 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:00:28 Download gff for GH27361.complete
Subject Subject Range Query Range Percent Splice Strand
CG7497-RB 24..1696 1..1673 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:13:03 Download gff for GH27361.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17636319..17636535 475..691 100 -> Plus
3L 17636693..17636885 692..884 100 -> Plus
3L 17633472..17633945 1..474 100 -> Plus
3L 17636946..17637301 885..1240 100 -> Plus
3L 17637443..17637875 1241..1673 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:13:03 Download gff for GH27361.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17636319..17636535 475..691 100 -> Plus
3L 17636693..17636885 692..884 100 -> Plus
3L 17633472..17633945 1..474 100 -> Plus
3L 17636946..17637301 885..1240 100 -> Plus
3L 17637443..17637875 1241..1673 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:13:03 Download gff for GH27361.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17636319..17636535 475..691 100 -> Plus
3L 17636693..17636885 692..884 100 -> Plus
3L 17633472..17633945 1..474 100 -> Plus
3L 17636946..17637301 885..1240 100 -> Plus
3L 17637443..17637875 1241..1673 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:16:32 Download gff for GH27361.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17626572..17627045 1..474 100 -> Plus
arm_3L 17629419..17629635 475..691 100 -> Plus
arm_3L 17629793..17629985 692..884 100 -> Plus
arm_3L 17630046..17630401 885..1240 100 -> Plus
arm_3L 17630543..17630975 1241..1673 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:12:40 Download gff for GH27361.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17626572..17627045 1..474 100 -> Plus
3L 17629419..17629635 475..691 100 -> Plus
3L 17629793..17629985 692..884 100 -> Plus
3L 17630046..17630401 885..1240 100 -> Plus
3L 17630543..17630975 1241..1673 100   Plus

GH27361.pep Sequence

Translation from 187 to 1506

> GH27361.pep
MKKKYRLRPVRFSPESPAIERNYHTGKMETTTPVLDLLMPHNSTTVAPPK
ALYANRNRLIIGVIIMVLGVFGNSLALFILARKKLNKNSKYTLMLRCLAT
NNLVALLGMLTTTLLKMYLSKEVLQSFIRVDCVGLVVWRFFGLSSGCIAA
VMAAERWMALARPFIYHKHITYELIRKSINSILMIAVVITFLPFVGFGAY
IDESNPDQLKCIRYRDAPGVWNKTYAVLFMVFGTLLCIVIVACNLFVAHT
LLCVIGRSRTAKRHMHYDLVSRDKNSAISIDPESSSGTTLYQTQLSTGSG
NSHRSVQPARQYRHSVSVTMAATDSSPVEIKFAKLMAFLSISFVICWMPQ
MIAIPLAIAPNRVPASNKFFIIADVLTALHFTSDPYVYVLSRSKSINWSL
LGCIKRWRSGWRPGGLRRSQSDQSRMRTTMTEANTLEFN*

GH27361.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10543-PA 415 GF10543-PA 1..415 28..439 1866 84.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:49:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13627-PA 412 GG13627-PA 1..412 28..439 2129 96.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16125-PA 410 GH16125-PA 18..410 43..438 1299 64.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7497-PC 412 CG7497-PC 1..412 28..439 2114 100 Plus
CG7497-PB 412 CG7497-PB 1..412 28..439 2114 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:49:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12389-PA 424 GI12389-PA 37..424 53..439 1488 74.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24909-PA 379 GL24909-PA 1..377 66..439 1676 83.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:49:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20393-PA 426 GA20393-PA 2..424 25..439 1780 80.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25712-PA 290 GM25712-PA 1..265 28..291 1160 89.8 Plus
Dsec\GM25713-PA 120 GM25713-PA 1..120 320..439 643 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:49:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14720-PA 376 GD14720-PA 1..376 28..439 1885 90.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12279-PA 417 GJ12279-PA 6..415 29..439 1446 68 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:49:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12032-PA 429 GK12032-PA 7..427 28..439 1641 75.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:49:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19923-PA 411 GE19923-PA 1..411 28..439 2112 96.6 Plus

GH27361.hyp Sequence

Translation from 187 to 1506

> GH27361.hyp
MKKKYRLRPVRFSPESPAIERNYHTGKMETTTPVLDLLMPHNSTTVAPPK
ALYANRNRLIIGVIIMVLGVFGNSLALFILARKKLNKNSKYTLMLRCLAT
NNLVALLGMLTTTLLKMYLSKEVLQSFIRVDCVGLVVWRFFGLSSGCIAA
VMAAERWMALARPFIYHKHITYELIRKSINSILMIAVVITFLPFVGFGAY
IDESNPDQLKCIRYRDAPGVWNKTYAVLFMVFGTLLCIVIVACNLFVAHT
LLCVIGRSRTAKRHMHYDLVSRDKNSAISIDPESSSGTTLYQTQLSTGSG
NSHRSVQPARQYRHSVSVTMAATDSSPVEIKFAKLMAFLSISFVICWMPQ
MIAIPLAIAPNRVPASNKFFIIADVLTALHFTSDPYVYVLSRSKSINWSL
LGCIKRWRSGWRPGGLRRSQSDQSRMRTTMTEANTLEFN*

GH27361.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:41:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG7497-PC 412 CG7497-PC 1..412 28..439 2114 100 Plus
CG7497-PB 412 CG7497-PB 1..412 28..439 2114 100 Plus