Clone GH27383 Report

Search the DGRC for GH27383

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:273
Well:83
Vector:pOT2
Associated Gene/TranscriptCG8861-RB
Protein status:GH27383.pep: gold
Preliminary Size:1437
Sequenced Size:1353

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8861 2001-01-01 Release 2 assignment
CG8861 2001-09-19 Blastp of sequenced clone
CG8861 2003-01-01 Sim4 clustering to Release 3
CG8861 2008-04-29 Release 5.5 accounting
CG8861 2008-08-15 Release 5.9 accounting
CG8861 2008-12-18 5.12 accounting

Clone Sequence Records

GH27383.complete Sequence

1353 bp (1353 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060351

> GH27383.complete
CTCAGACGGAACGCACGGTTTGGCGGACGCAGTTTGAAATAATTCAAAAT
ATAATATTTCAATTTTAGCACGAACATCGTCGAAGATCTTTGGCAGAACC
CTTTAAGCAATATAAATAAACGAAAACAACAATTAAGCTAATATATTAAC
CGACTAACAACAGTAGAAACAAAGTCTTCCAAAAAGCGGAACGATTCCAC
TGAGAGGAACAAAGTGAAAATTGCGATTTCAGTGAGTGCAGTTTGTCAGT
TCGTCATTCTGCCCATTTGTCAGTTCGCCAGTTCGCCAACTCGCCAGTGT
GTGTGTGCCAGTGTGTTAGTGAGTGTGAACTCTGCGGTAAAGGTCAGAAC
TCATATGAAAATGTCGAGCGGCAACCAAGAAGCAATGTCAACAAAAGCAG
CTGTCAACTCGGTGAACGTGGACGAGGACAAGGCCCCGTCAATGCATATG
CATTCAACATCCTCATCAGCCCCAGGATCGATTGCGTCCAGCTACCATGT
GAAAACGCTGGCCATTCTGGTGGCCATCGTCTTGTGCAGCGGCAGCTTGG
GATTCGCCGACGGGCTCAAGTGCCACATGTGCGGCCAGTACAACGAGGGC
GTGGGCTCCATTACGCCCTGCACCAACTACACCACGGACATTGCCCATCT
CTACCTGAAGGAGTGCACCAAGAAGAGCGAGAAGTTCTGCGTGAAATATG
TTAGTGAACTGTCGACCGTTCGCGATTGTGCTACCGAGTGTGTGGAAAAA
GAAATTTGGGAGACACAAACGTATTGCTGCACCGAGGACGGATGCAACTC
TGGCACCCAATTGGCCTACTCCGTCATCCTGTTGACCCTGCCAATCCTTT
CGGTGGCTTGGCCAACATTCGTTGATTTTTGGAATACGCGACGTTAAGTG
GGTCCTCAGGTGATCCAGCCAATCTTCGCTCGGTTCTTAACTTGATTTCT
GTATTATTTTGCAGCAAGTGAAAAATGTATAAAATTTCAAGCGTTAGCAT
TTATATTATGTTCAAAAATTTATTAAAAGCACAAACAAAATTCTGTGAAC
GGGACCTAATCAAACTAAGAAGCGATTACAAGAAAAATTATCATTCGAAA
CTTTTTTTTTGGAATTTATTGACTTATGCGATTTATGAAATATATATTTT
GGCCAACATGTTTGCTGTTATTACTTTGAGGCTTTGTATTTCTGTCTGTC
TTCCCAAAAAAACACAAAAGTGTTGGTAAATGATAAATAACGGGTGTAGA
AACATCCAAAAGCTTAACTAATTCATATTCACAAGGAATAAACAATTGCA
ATGCCAAATTACTACTAAAACCGTGTTAAAAAATTAAAAAAAAAAAAAAA
AAA

GH27383.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG8861-RC 1352 CG8861-RC 16..1352 1..1337 6685 100 Plus
CG8861-RB 1412 CG8861-RB 101..1382 69..1350 6395 99.9 Plus
CG8861.e 1604 CG8861.e 101..1382 69..1350 6395 99.9 Plus
CG8861-RB 1412 CG8861-RB 52..100 1..49 245 100 Plus
CG8861.e 1604 CG8861.e 52..100 1..49 245 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:46:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 5152430..5153073 693..50 3175 99.5 Minus
chr3R 27901430 chr3R 5120730..5121315 1335..750 2870 99.3 Minus
chr3R 27901430 chr3R 5121448..5121506 751..693 295 100 Minus
chr3R 27901430 chr3R 5154207..5154255 49..1 245 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:10:40 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9326688..9327331 693..50 3220 100 Minus
3R 32079331 3R 9294953..9295553 1350..750 2990 99.8 Minus
3R 32079331 3R 9295686..9295744 751..693 295 100 Minus
3R 32079331 3R 9328442..9328490 49..1 245 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 9067519..9068162 693..50 3220 100 Minus
3R 31820162 3R 9035784..9036384 1350..750 2990 99.8 Minus
3R 31820162 3R 9036517..9036575 751..693 295 100 Minus
3R 31820162 3R 9069273..9069321 49..1 245 100 Minus
Blast to na_te.dros performed on 2019-03-15 17:46:24 has no hits.

GH27383.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:47:42 Download gff for GH27383.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 5120740..5121313 752..1325 99 <- Minus
chr3R 5121448..5121505 694..751 100 <- Minus
chr3R 5152430..5153073 50..693 99 <- Minus
chr3R 5154207..5154255 1..49 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:58:25 Download gff for GH27383.complete
Subject Subject Range Query Range Percent Splice Strand
CG8861-RB 1..537 361..897 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:04:47 Download gff for GH27383.complete
Subject Subject Range Query Range Percent Splice Strand
CG8861-RB 1..537 361..897 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:46:14 Download gff for GH27383.complete
Subject Subject Range Query Range Percent Splice Strand
CG8861-RC 1..537 361..897 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:35:25 Download gff for GH27383.complete
Subject Subject Range Query Range Percent Splice Strand
CG8861-RA 1..543 355..897 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:46:50 Download gff for GH27383.complete
Subject Subject Range Query Range Percent Splice Strand
CG8861-RC 1..537 361..897 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:58:22 Download gff for GH27383.complete
Subject Subject Range Query Range Percent Splice Strand
CG8861-RB 16..64 1..49 100 == Plus
CG8861-RB 65..1331 69..1335 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:04:46 Download gff for GH27383.complete
Subject Subject Range Query Range Percent Splice Strand
CG8861-RC 16..1350 1..1335 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:46:14 Download gff for GH27383.complete
Subject Subject Range Query Range Percent Splice Strand
CG8861-RC 22..1356 1..1335 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:35:25 Download gff for GH27383.complete
Subject Subject Range Query Range Percent Splice Strand
CG8861-RA 16..64 1..49 100 == Plus
CG8861-RA 65..1331 69..1335 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:46:50 Download gff for GH27383.complete
Subject Subject Range Query Range Percent Splice Strand
CG8861-RC 22..1356 1..1335 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:47:42 Download gff for GH27383.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9294968..9295551 752..1335 100 <- Minus
3R 9295686..9295743 694..751 100 <- Minus
3R 9326688..9327331 50..693 100 <- Minus
3R 9328442..9328490 1..49 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:47:42 Download gff for GH27383.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9294968..9295551 752..1335 100 <- Minus
3R 9295686..9295743 694..751 100 <- Minus
3R 9326688..9327331 50..693 100 <- Minus
3R 9328442..9328490 1..49 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:47:42 Download gff for GH27383.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9294968..9295551 752..1335 100 <- Minus
3R 9295686..9295743 694..751 100 <- Minus
3R 9326688..9327331 50..693 100 <- Minus
3R 9328442..9328490 1..49 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:46:14 Download gff for GH27383.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5120690..5121273 752..1335 100 <- Minus
arm_3R 5121408..5121465 694..751 100 <- Minus
arm_3R 5152410..5153053 50..693 100 <- Minus
arm_3R 5154164..5154212 1..49 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:12:25 Download gff for GH27383.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9035799..9036382 752..1335 100 <- Minus
3R 9036517..9036574 694..751 100 <- Minus
3R 9067519..9068162 50..693 100 <- Minus
3R 9069273..9069321 1..49 100   Minus

GH27383.pep Sequence

Translation from 354 to 896

> GH27383.pep
MKMSSGNQEAMSTKAAVNSVNVDEDKAPSMHMHSTSSSAPGSIASSYHVK
TLAILVAIVLCSGSLGFADGLKCHMCGQYNEGVGSITPCTNYTTDIAHLY
LKECTKKSEKFCVKYVSELSTVRDCATECVEKEIWETQTYCCTEDGCNSG
TQLAYSVILLTLPILSVAWPTFVDFWNTRR*

GH27383.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17774-PA 185 GF17774-PA 1..185 1..180 728 75.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17385-PA 184 GG17385-PA 1..184 3..180 793 88 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22350-PA 138 GH22350-PA 1..134 30..165 505 69.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8861-PB 178 CG8861-PB 1..178 3..180 950 100 Plus
CG8861-PC 178 CG8861-PC 1..178 3..180 950 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23607-PA 176 GI23607-PA 61..172 54..165 491 79.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13735-PA 189 GL13735-PA 1..189 3..180 631 68 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:48:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21374-PB 187 GA21374-PB 1..187 3..180 640 69.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26271-PA 180 GM26271-PA 1..180 1..180 933 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:48:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20807-PA 178 GD20807-PA 1..178 3..180 924 97.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23581-PA 147 GJ23581-PA 32..143 54..165 498 80.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:48:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11730-PA 192 GK11730-PA 1..192 3..180 646 62.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:48:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24789-PA 182 GE24789-PA 1..182 3..180 753 85.2 Plus

GH27383.hyp Sequence

Translation from 354 to 896

> GH27383.hyp
MKMSSGNQEAMSTKAAVNSVNVDEDKAPSMHMHSTSSSAPGSIASSYHVK
TLAILVAIVLCSGSLGFADGLKCHMCGQYNEGVGSITPCTNYTTDIAHLY
LKECTKKSEKFCVKYVSELSTVRDCATECVEKEIWETQTYCCTEDGCNSG
TQLAYSVILLTLPILSVAWPTFVDFWNTRR*

GH27383.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8861-PB 178 CG8861-PB 1..178 3..180 950 100 Plus
CG8861-PC 178 CG8861-PC 1..178 3..180 950 100 Plus