BDGP Sequence Production Resources |
Search the DGRC for GH27401
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 274 |
Well: | 1 |
Vector: | pOT2 |
Associated Gene/Transcript | HPS1-RA |
Protein status: | GH27401.pep: gold |
Preliminary Size: | 2088 |
Sequenced Size: | 2094 |
Gene | Date | Evidence |
---|---|---|
CG12855 | 2001-01-01 | Release 2 assignment |
CG12855 | 2001-09-19 | Blastp of sequenced clone |
CG12855 | 2003-01-01 | Sim4 clustering to Release 3 |
HPS | 2008-04-29 | Release 5.5 accounting |
HPS | 2008-08-15 | Release 5.9 accounting |
HPS | 2008-12-18 | 5.12 accounting |
2094 bp (2094 high quality bases) assembled on 2001-09-19
GenBank Submission: AY058469
> GH27401.complete TTACCCAGCACCAGTGACACTGGTGAAAGTTTTGTTGTGTATTTGGTGTT TTGCCAATGCTGATAAGAAAATGAACGGACTGATTGTGTTTAACAGCGCC AACGATGTTGTATACCAGAAGCTTAACGAGCCGCTGGCGCAGAAGATCCG GAGTGTGGCCACCACCCAGGGCCTGCTCCAGTCCGGCGGCTCCCTGGACA GCAACATACTGCTGCAGATTTTCAGCCCCATCGTTGGATCTCAGCGAATA ATGCAGTGCCAGTTCGATAATGCCTACTCCAGCCTGCAGTGTGAGCAAGG CTTCAATTTGGTGTTCGGCGAACTTCTTGGCTTCACCTTTCTGAAGATCG GACAAATACCCGTGGAGCTGCTGGGTCGCCAAATGGGTGTGGCCATTACG CTGACGCGCTATTGTTACGGCGCCAATTTGTTTGCCGCCCAGGCGGGGGC CATGCAACAGGAGTTGCTGACGCAGTGCCTCGACTGCTATGAGACTTTGT TGTGGGAGGAGGATCAGACGTACCTGCTGGAGGCCATGCCCAGGCTGCTG ATCAACACGGAACTAAAGAGGACAGTGCATCTGACGCTGGACGCCACGCT TGAGCACTTGCGCCAGCTCGGACTGCCCCGAGCCCACGCCCTGTTGCTCG TTTCCAACAAGCTGGTGGCCGCGAACAGCACTCGGCAAGCTCTGCCGCTT GCTGCCGCCGACCTACTCTTCCTCAGCCTCATGTCACGCGCCCTGCAAGC GCCAAAGTCCCCTTCCCAGCGAGCAGTAGCTGTATTCCTGCAGGGTGTCT CCTATGATGTGAACTCTGGCTGCGTTCCCAGTATCGTGCACATCTCGCGT CTCCATGGTAACCAAGTTCTCCTGCAGGTCATCGAGTACGCCCACATGCC ACTGACCAGCTGCATCTACGATTCCTTCTTTGTGCTTCAAAAAATCGTGG CTGTTCAGCATCAGGGCGATTCGGATGCCCTGAAGCCCGCCTTCGAGAAC CTCGAATCGTTTATTGTGCAGGCCTTGACCGCTTTGAAGCGATATCTGAA ACAGCGATCGGAAACCGATGACCTAGAGAACTGCACGAAGAAGTTCGCCG CTAAATGGGAGAATCTTCGCAAGATGTACACTGAGTACTTCAAGAACTTT GAGCGGGAGCTGCTCGTGAGGATTGAGTCGAATTTGCCCTCGTTCGGAGA GGAACTGAAGCAGATATTCACACTGGCCTGCTGCGACAGCTCAAGTGTCC ATGAGCTGGATCAACTCTCTGATACGGCAGCGAATGTGGAAGCCAAGCTA CTGGAGTTCGCTGAATTTCTGGCCGTTAAGGCCACTCGTAACATATCCAT TGATGCTTATTTGGAGGATTTTCCGGGTCTGGTGCACTTTATGTACGTCA ATCGCAGCCGAGGACAAATGCTTGCTCCGGATCTGCGACCGAACCAGCTG GTGCCAAAGACAAAACTCTGGAGCATGGTGGAGATCGCGAGAAATTACCT TAAGAAGGGCCAGACCACAGTGATGTGGAAGGATAAGGCATTCCATTACT CGTACTTCCTCTGGTTCGAGGACATGTCTGGTGGCGTTCTTAGTACCGTC GTGGATTTGCAGCACCACTTTCTGTCCACAGGAGCAGCCAGTGGCAACGG TTCGAAATCCCCAACAGAACCAGGTGCTCTTACAATGGACTATTACCACG ATCTGGCGGAGTTGTGCTTCCCCAAGCTGTCACCGGCCAAAGTGCGCGTC TACGAGTTGTATTGCATTCATCTGGGACTGGTAACCGCCACATGCGCCGT GGAGCATGCACGTCGCCTGGTGGCCACCATCAGTGATGTTGTGGGCGAGG AAGCGTTTTAAGTGCATTGGCCATTGGTCATTCCAGATTTATAACATGAT TTCTAGTCAATTTTCGAGACTCCTAGGCGAGATAATCCACTCGAAATTTT GTTAGGTTTAGGACAACTATCATCCACTGTTATAGGCTACACAACAAGGA TATTTGTAAAGTTATTGGAAACATATATATTTTCTTCAACCGGCAATAAA AATGTAACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 10742768..10744828 | 1..2061 | 10305 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 14855442..14857505 | 1..2064 | 10320 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 14856641..14858704 | 1..2064 | 10320 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 10742768..10744828 | 1..2061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HPS-RA | 1..1791 | 71..1861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HPS1-RA | 1..1791 | 71..1861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HPS1-RA | 1..1791 | 71..1861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HPS-RA | 1..1791 | 71..1861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HPS1-RA | 1..1791 | 71..1861 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HPS-RA | 1..2059 | 1..2059 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HPS1-RA | 1..2061 | 1..2061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HPS1-RA | 14..2074 | 1..2061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HPS-RA | 1..2059 | 1..2059 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HPS1-RA | 14..2074 | 1..2061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14855442..14857502 | 1..2061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14855442..14857502 | 1..2061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14855442..14857502 | 1..2061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 10742947..10745007 | 1..2061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14856641..14858701 | 1..2061 | 100 | Plus |
Translation from 0 to 1860
> GH27401.hyp YPAPVTLVKVLLCIWCFANADKKMNGLIVFNSANDVVYQKLNEPLAQKIR SVATTQGLLQSGGSLDSNILLQIFSPIVGSQRIMQCQFDNAYSSLQCEQG FNLVFGELLGFTFLKIGQIPVELLGRQMGVAITLTRYCYGANLFAAQAGA MQQELLTQCLDCYETLLWEEDQTYLLEAMPRLLINTELKRTVHLTLDATL EHLRQLGLPRAHALLLVSNKLVAANSTRQALPLAAADLLFLSLMSRALQA PKSPSQRAVAVFLQGVSYDVNSGCVPSIVHISRLHGNQVLLQVIEYAHMP LTSCIYDSFFVLQKIVAVQHQGDSDALKPAFENLESFIVQALTALKRYLK QRSETDDLENCTKKFAAKWENLRKMYTEYFKNFERELLVRIESNLPSFGE ELKQIFTLACCDSSSVHELDQLSDTAANVEAKLLEFAEFLAVKATRNISI DAYLEDFPGLVHFMYVNRSRGQMLAPDLRPNQLVPKTKLWSMVEIARNYL KKGQTTVMWKDKAFHYSYFLWFEDMSGGVLSTVVDLQHHFLSTGAASGNG SKSPTEPGALTMDYYHDLAELCFPKLSPAKVRVYELYCIHLGLVTATCAV EHARRLVATISDVVGEEAF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HPS1-PA | 596 | CG12855-PA | 1..596 | 24..619 | 3051 | 100 | Plus |
Translation from 70 to 1860
> GH27401.pep MNGLIVFNSANDVVYQKLNEPLAQKIRSVATTQGLLQSGGSLDSNILLQI FSPIVGSQRIMQCQFDNAYSSLQCEQGFNLVFGELLGFTFLKIGQIPVEL LGRQMGVAITLTRYCYGANLFAAQAGAMQQELLTQCLDCYETLLWEEDQT YLLEAMPRLLINTELKRTVHLTLDATLEHLRQLGLPRAHALLLVSNKLVA ANSTRQALPLAAADLLFLSLMSRALQAPKSPSQRAVAVFLQGVSYDVNSG CVPSIVHISRLHGNQVLLQVIEYAHMPLTSCIYDSFFVLQKIVAVQHQGD SDALKPAFENLESFIVQALTALKRYLKQRSETDDLENCTKKFAAKWENLR KMYTEYFKNFERELLVRIESNLPSFGEELKQIFTLACCDSSSVHELDQLS DTAANVEAKLLEFAEFLAVKATRNISIDAYLEDFPGLVHFMYVNRSRGQM LAPDLRPNQLVPKTKLWSMVEIARNYLKKGQTTVMWKDKAFHYSYFLWFE DMSGGVLSTVVDLQHHFLSTGAASGNGSKSPTEPGALTMDYYHDLAELCF PKLSPAKVRVYELYCIHLGLVTATCAVEHARRLVATISDVVGEEAF*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF12824-PA | 597 | GF12824-PA | 1..597 | 1..596 | 2877 | 89.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20485-PA | 596 | GG20485-PA | 1..596 | 1..596 | 3115 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22790-PA | 601 | GH22790-PA | 1..601 | 1..596 | 2504 | 79.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HPS1-PA | 596 | CG12855-PA | 1..596 | 1..596 | 3051 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20585-PA | 607 | GI20585-PA | 1..607 | 1..596 | 2403 | 75.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11251-PA | 598 | GL11251-PA | 1..598 | 1..596 | 2486 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11858-PA | 598 | GA11858-PA | 1..598 | 1..596 | 2485 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21576-PA | 596 | GM21576-PA | 1..596 | 1..596 | 3163 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11081-PA | 596 | GD11081-PA | 1..596 | 1..596 | 3179 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20765-PA | 604 | GJ20765-PA | 1..604 | 1..596 | 2465 | 76.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22171-PA | 619 | GK22171-PA | 1..619 | 1..596 | 2510 | 76.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13616-PA | 596 | GE13616-PA | 1..596 | 1..596 | 3155 | 98.5 | Plus |