Clone GH27401 Report

Search the DGRC for GH27401

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:274
Well:1
Vector:pOT2
Associated Gene/TranscriptHPS1-RA
Protein status:GH27401.pep: gold
Preliminary Size:2088
Sequenced Size:2094

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12855 2001-01-01 Release 2 assignment
CG12855 2001-09-19 Blastp of sequenced clone
CG12855 2003-01-01 Sim4 clustering to Release 3
HPS 2008-04-29 Release 5.5 accounting
HPS 2008-08-15 Release 5.9 accounting
HPS 2008-12-18 5.12 accounting

Clone Sequence Records

GH27401.complete Sequence

2094 bp (2094 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058469

> GH27401.complete
TTACCCAGCACCAGTGACACTGGTGAAAGTTTTGTTGTGTATTTGGTGTT
TTGCCAATGCTGATAAGAAAATGAACGGACTGATTGTGTTTAACAGCGCC
AACGATGTTGTATACCAGAAGCTTAACGAGCCGCTGGCGCAGAAGATCCG
GAGTGTGGCCACCACCCAGGGCCTGCTCCAGTCCGGCGGCTCCCTGGACA
GCAACATACTGCTGCAGATTTTCAGCCCCATCGTTGGATCTCAGCGAATA
ATGCAGTGCCAGTTCGATAATGCCTACTCCAGCCTGCAGTGTGAGCAAGG
CTTCAATTTGGTGTTCGGCGAACTTCTTGGCTTCACCTTTCTGAAGATCG
GACAAATACCCGTGGAGCTGCTGGGTCGCCAAATGGGTGTGGCCATTACG
CTGACGCGCTATTGTTACGGCGCCAATTTGTTTGCCGCCCAGGCGGGGGC
CATGCAACAGGAGTTGCTGACGCAGTGCCTCGACTGCTATGAGACTTTGT
TGTGGGAGGAGGATCAGACGTACCTGCTGGAGGCCATGCCCAGGCTGCTG
ATCAACACGGAACTAAAGAGGACAGTGCATCTGACGCTGGACGCCACGCT
TGAGCACTTGCGCCAGCTCGGACTGCCCCGAGCCCACGCCCTGTTGCTCG
TTTCCAACAAGCTGGTGGCCGCGAACAGCACTCGGCAAGCTCTGCCGCTT
GCTGCCGCCGACCTACTCTTCCTCAGCCTCATGTCACGCGCCCTGCAAGC
GCCAAAGTCCCCTTCCCAGCGAGCAGTAGCTGTATTCCTGCAGGGTGTCT
CCTATGATGTGAACTCTGGCTGCGTTCCCAGTATCGTGCACATCTCGCGT
CTCCATGGTAACCAAGTTCTCCTGCAGGTCATCGAGTACGCCCACATGCC
ACTGACCAGCTGCATCTACGATTCCTTCTTTGTGCTTCAAAAAATCGTGG
CTGTTCAGCATCAGGGCGATTCGGATGCCCTGAAGCCCGCCTTCGAGAAC
CTCGAATCGTTTATTGTGCAGGCCTTGACCGCTTTGAAGCGATATCTGAA
ACAGCGATCGGAAACCGATGACCTAGAGAACTGCACGAAGAAGTTCGCCG
CTAAATGGGAGAATCTTCGCAAGATGTACACTGAGTACTTCAAGAACTTT
GAGCGGGAGCTGCTCGTGAGGATTGAGTCGAATTTGCCCTCGTTCGGAGA
GGAACTGAAGCAGATATTCACACTGGCCTGCTGCGACAGCTCAAGTGTCC
ATGAGCTGGATCAACTCTCTGATACGGCAGCGAATGTGGAAGCCAAGCTA
CTGGAGTTCGCTGAATTTCTGGCCGTTAAGGCCACTCGTAACATATCCAT
TGATGCTTATTTGGAGGATTTTCCGGGTCTGGTGCACTTTATGTACGTCA
ATCGCAGCCGAGGACAAATGCTTGCTCCGGATCTGCGACCGAACCAGCTG
GTGCCAAAGACAAAACTCTGGAGCATGGTGGAGATCGCGAGAAATTACCT
TAAGAAGGGCCAGACCACAGTGATGTGGAAGGATAAGGCATTCCATTACT
CGTACTTCCTCTGGTTCGAGGACATGTCTGGTGGCGTTCTTAGTACCGTC
GTGGATTTGCAGCACCACTTTCTGTCCACAGGAGCAGCCAGTGGCAACGG
TTCGAAATCCCCAACAGAACCAGGTGCTCTTACAATGGACTATTACCACG
ATCTGGCGGAGTTGTGCTTCCCCAAGCTGTCACCGGCCAAAGTGCGCGTC
TACGAGTTGTATTGCATTCATCTGGGACTGGTAACCGCCACATGCGCCGT
GGAGCATGCACGTCGCCTGGTGGCCACCATCAGTGATGTTGTGGGCGAGG
AAGCGTTTTAAGTGCATTGGCCATTGGTCATTCCAGATTTATAACATGAT
TTCTAGTCAATTTTCGAGACTCCTAGGCGAGATAATCCACTCGAAATTTT
GTTAGGTTTAGGACAACTATCATCCACTGTTATAGGCTACACAACAAGGA
TATTTGTAAAGTTATTGGAAACATATATATTTTCTTCAACCGGCAATAAA
AATGTAACAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH27401.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
HPS-RA 2059 HPS-RA 1..2059 1..2059 10295 100 Plus
CG33506-RA 1191 CG33506-RA 1123..1191 2064..1996 345 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:57:39
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10742768..10744828 1..2061 10305 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:10:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14855442..14857505 1..2064 10320 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14856641..14858704 1..2064 10320 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:57:38 has no hits.

GH27401.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:58:34 Download gff for GH27401.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10742768..10744828 1..2061 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:58:45 Download gff for GH27401.complete
Subject Subject Range Query Range Percent Splice Strand
HPS-RA 1..1791 71..1861 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:04:48 Download gff for GH27401.complete
Subject Subject Range Query Range Percent Splice Strand
HPS1-RA 1..1791 71..1861 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:12:14 Download gff for GH27401.complete
Subject Subject Range Query Range Percent Splice Strand
HPS1-RA 1..1791 71..1861 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:35:27 Download gff for GH27401.complete
Subject Subject Range Query Range Percent Splice Strand
HPS-RA 1..1791 71..1861 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:45 Download gff for GH27401.complete
Subject Subject Range Query Range Percent Splice Strand
HPS1-RA 1..1791 71..1861 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:54:02 Download gff for GH27401.complete
Subject Subject Range Query Range Percent Splice Strand
HPS-RA 1..2059 1..2059 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:04:48 Download gff for GH27401.complete
Subject Subject Range Query Range Percent Splice Strand
HPS1-RA 1..2061 1..2061 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:14 Download gff for GH27401.complete
Subject Subject Range Query Range Percent Splice Strand
HPS1-RA 14..2074 1..2061 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:35:28 Download gff for GH27401.complete
Subject Subject Range Query Range Percent Splice Strand
HPS-RA 1..2059 1..2059 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:45 Download gff for GH27401.complete
Subject Subject Range Query Range Percent Splice Strand
HPS1-RA 14..2074 1..2061 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:58:34 Download gff for GH27401.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14855442..14857502 1..2061 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:58:34 Download gff for GH27401.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14855442..14857502 1..2061 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:58:34 Download gff for GH27401.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14855442..14857502 1..2061 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:14 Download gff for GH27401.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10742947..10745007 1..2061 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:12:27 Download gff for GH27401.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14856641..14858701 1..2061 100   Plus

GH27401.hyp Sequence

Translation from 0 to 1860

> GH27401.hyp
YPAPVTLVKVLLCIWCFANADKKMNGLIVFNSANDVVYQKLNEPLAQKIR
SVATTQGLLQSGGSLDSNILLQIFSPIVGSQRIMQCQFDNAYSSLQCEQG
FNLVFGELLGFTFLKIGQIPVELLGRQMGVAITLTRYCYGANLFAAQAGA
MQQELLTQCLDCYETLLWEEDQTYLLEAMPRLLINTELKRTVHLTLDATL
EHLRQLGLPRAHALLLVSNKLVAANSTRQALPLAAADLLFLSLMSRALQA
PKSPSQRAVAVFLQGVSYDVNSGCVPSIVHISRLHGNQVLLQVIEYAHMP
LTSCIYDSFFVLQKIVAVQHQGDSDALKPAFENLESFIVQALTALKRYLK
QRSETDDLENCTKKFAAKWENLRKMYTEYFKNFERELLVRIESNLPSFGE
ELKQIFTLACCDSSSVHELDQLSDTAANVEAKLLEFAEFLAVKATRNISI
DAYLEDFPGLVHFMYVNRSRGQMLAPDLRPNQLVPKTKLWSMVEIARNYL
KKGQTTVMWKDKAFHYSYFLWFEDMSGGVLSTVVDLQHHFLSTGAASGNG
SKSPTEPGALTMDYYHDLAELCFPKLSPAKVRVYELYCIHLGLVTATCAV
EHARRLVATISDVVGEEAF*

GH27401.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
HPS1-PA 596 CG12855-PA 1..596 24..619 3051 100 Plus

GH27401.pep Sequence

Translation from 70 to 1860

> GH27401.pep
MNGLIVFNSANDVVYQKLNEPLAQKIRSVATTQGLLQSGGSLDSNILLQI
FSPIVGSQRIMQCQFDNAYSSLQCEQGFNLVFGELLGFTFLKIGQIPVEL
LGRQMGVAITLTRYCYGANLFAAQAGAMQQELLTQCLDCYETLLWEEDQT
YLLEAMPRLLINTELKRTVHLTLDATLEHLRQLGLPRAHALLLVSNKLVA
ANSTRQALPLAAADLLFLSLMSRALQAPKSPSQRAVAVFLQGVSYDVNSG
CVPSIVHISRLHGNQVLLQVIEYAHMPLTSCIYDSFFVLQKIVAVQHQGD
SDALKPAFENLESFIVQALTALKRYLKQRSETDDLENCTKKFAAKWENLR
KMYTEYFKNFERELLVRIESNLPSFGEELKQIFTLACCDSSSVHELDQLS
DTAANVEAKLLEFAEFLAVKATRNISIDAYLEDFPGLVHFMYVNRSRGQM
LAPDLRPNQLVPKTKLWSMVEIARNYLKKGQTTVMWKDKAFHYSYFLWFE
DMSGGVLSTVVDLQHHFLSTGAASGNGSKSPTEPGALTMDYYHDLAELCF
PKLSPAKVRVYELYCIHLGLVTATCAVEHARRLVATISDVVGEEAF*

GH27401.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12824-PA 597 GF12824-PA 1..597 1..596 2877 89.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20485-PA 596 GG20485-PA 1..596 1..596 3115 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22790-PA 601 GH22790-PA 1..601 1..596 2504 79.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:07
Subject Length Description Subject Range Query Range Score Percent Strand
HPS1-PA 596 CG12855-PA 1..596 1..596 3051 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20585-PA 607 GI20585-PA 1..607 1..596 2403 75.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:48:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11251-PA 598 GL11251-PA 1..598 1..596 2486 78.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11858-PA 598 GA11858-PA 1..598 1..596 2485 78.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21576-PA 596 GM21576-PA 1..596 1..596 3163 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11081-PA 596 GD11081-PA 1..596 1..596 3179 99.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20765-PA 604 GJ20765-PA 1..604 1..596 2465 76.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22171-PA 619 GK22171-PA 1..619 1..596 2510 76.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:48:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13616-PA 596 GE13616-PA 1..596 1..596 3155 98.5 Plus