Clone GH27479 Report

Search the DGRC for GH27479

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:274
Well:79
Vector:pOT2
Associated Gene/TranscriptTsp-RC
Protein status:GH27479.pep: gold
Preliminary Size:2262
Sequenced Size:2112

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11326 2001-01-01 Release 2 assignment
CG11326 2001-11-08 Blastp of sequenced clone
Tsp 2008-04-29 Release 5.5 accounting
Tsp 2008-08-15 Release 5.9 accounting
Tsp 2008-12-18 5.12 accounting

Clone Sequence Records

GH27479.complete Sequence

2112 bp (2112 high quality bases) assembled on 2001-11-08

GenBank Submission: AY069229

> GH27479.complete
AAGACGTGTGAAGATACCCTTGCGACGTGTTTGATCTTTCGCTCTGCAAA
AGTACAACATAATAAAAGTGTCTGTGCGTGCGTCCAGGAAAAAGCGGCGG
AAAAGTGTGGCAATACTCGTAAAAATAACTCAGGTCGTTTCCATTCTAAA
TTGCGCGTTGACAGCCGCAAGTGGCGCAAACGAGCCGCACAAACAACAAG
GAGCTGTCAGTTCCGTCCCGCCAAGTGGATCACTTGGATCACATCCACAT
CCGCAGTGGGGGCACCTCTAGAGCAAGAGCAGCGTCCTTGACCACGAGCG
GACGGTAAAGATTTTGGAGTGAGGCGCTCATACCCCACGGTCCATCACTC
CCGCACCCCCATCCATTGCTTCCGAAGATCACAGAAGACACCAGCAACAA
CGAACACGATGAATTGGACGCGCGTGCTGTTAATCGGGTTGACCGCCTTG
GCGCTGACATTTGTGGATGTTGCATCACTCTCACTCGATCCAGTTGCTTC
TGCTGAACTGGAGCAGTTTATACGCAAAGGAGATGTGGTCATATCAACGC
GACACATTAGACCTCGTCGAAAGTTGCACATATCCATAGAAGCACTCTTC
ATGATCGACTTCCCGATGCTGAAGCACAAGATGTCCTTCTTCCTGGACCG
CAAACAGCAGCGGGTAACGTTGGACATTAGTGCGAACGGAGCCACCGAGT
CGCGCAACTTCGAGATACCCAACATCAATGAGACAAGCACCATCCGATCC
CTGGCACTGCAGTTCTCCAAGAATCGCATAACGCTCCATGTGGACTGCAA
GGCGAGCACGCATCACGACATCGACATGAACCTGGCCAAGCTGTACACCC
AGATGGACGATCCGGTGATCAAGCTGTTCCGTGAGCGCAAGTATCCCCTT
CACTTCGACGGGGACATGGAGCACTCCCTGCAGCGGGCCAATTGCCAGAA
GGGCAACCATCGTCGTGGCAATCGTCGCATGCTGCGCAACAAGATCACCG
AGCGTGAGAAGAACAAGAAGCGCGATGTGCGCGGCTGGTATGAGCCAACG
ATCGCCCGGGAAGGAGTCGTGGATCACAGACACCAGGAGGTGCCAACGGA
CGTGGAGCGCGGTGATATTCCCGTTCTGAATGGCGATTGCGAAGACGCCC
TCGCACGATCGCTCAGCGATTTACTGGCTCTGGTGAAGCTGCTCCGCGAA
GACGTCGCCCACCAGCGCCAGGAGATTGCCTACCTGCGTATGCTCCTGGA
GAACTGTGCCGGCTGCAAGAATCCCCTCACCACCGACAACCAACTGCGCA
TCGAGCCCGACTGCCGTTCCGCCAATCCCTGTTATCCTGGAGTGGAGTGC
TTGGACTCGGCGGCCGGTCCCCGATGTGGCCACTGTCCCCTTGGCTTCAT
TGGCGATGGCAAGAGCTGCAAGCCGGGCGTTACCTGCGCCCATCACATGT
GCTATCCAGGCGTTCAGTGTCACGATACCGTGAATGGAGCCCAGTGTGAC
TCCTGTCCAGCCGGCTACGAAGGTGATGGACGCACATGTTCGCTACGTAA
TCCTTGCCTGGACACACCGTGCCCCTCAGGCAACATTCTAGTGCCCTCGC
ATAATGTGCAACACTATCAGAGGCAGAGCCAGTACACCGCCCGAAAATAC
TCGGTCGTTACGAACTAATCCGCGGAGGAAGGGACTATTGCAACGTTTTC
GGCTGAGCTATGATACACAACTAAAGCTAAACAAGTACAGAGCGTAGAAA
GTGCACATATTGAATTACTACTTTATAAAATAGTCATAAGTTGTAAGCTC
TCCGATTGGCGAACAGCGGAAATTCATAGTATTAGCAATTATCATTTGAA
AGCAGACGCAGCTCCAGCGGAAAATCGTGAGATAATATCATTGAAAAGCT
CTTGTAGAATAGATAACTAAATATGTATATGTACGTCCCAATCAAATGCC
CAGAAAGTGGAGTCTATAAACGTGTAACAAAATTTGCTTGCCCCGCCTGA
AATCTCCCAATTATTGTAATAAACTATGAATATTATTATAACAAAATGTA
CGCTGTAATTTTTGGTATTTAATAAATAAACTCCATCATTGGCCAAAAAA
AAAAAAAAAAAA

GH27479.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:45:55
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp-RD 2219 Tsp-RD 118..2212 1..2095 10460 99.9 Plus
Tsp-RE 2249 Tsp-RE 109..2198 6..2095 10435 99.9 Plus
Tsp-RC 2136 Tsp-RC 41..2130 6..2095 10435 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 6688686..6689204 2094..1576 2595 100 Minus
chr2L 23010047 chr2L 6699245..6699565 876..556 1560 99.1 Minus
chr2L 23010047 chr2L 6707336..6707628 298..6 1450 99.7 Minus
chr2L 23010047 chr2L 6696324..6696521 1340..1143 990 100 Minus
chr2L 23010047 chr2L 6700815..6701011 493..297 970 99.5 Minus
chr2L 23010047 chr2L 6698829..6698967 1144..1006 695 100 Minus
chr2L 23010047 chr2L 6699051..6699181 1006..876 655 100 Minus
chr2L 23010047 chr2L 6690037..6690159 1580..1458 615 100 Minus
chr2L 23010047 chr2L 6696072..6696190 1457..1339 595 100 Minus
chr2L 23010047 chr2L 6699617..6699686 560..491 350 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:10:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6689624..6690143 2095..1576 2600 100 Minus
2L 23513712 2L 6700181..6700501 876..556 1605 100 Minus
2L 23513712 2L 6708287..6708579 298..6 1450 99.7 Minus
2L 23513712 2L 6697262..6697459 1340..1143 990 100 Minus
2L 23513712 2L 6701750..6701946 493..297 985 100 Minus
2L 23513712 2L 6699765..6699903 1144..1006 695 100 Minus
2L 23513712 2L 6699987..6700117 1006..876 655 100 Minus
2L 23513712 2L 6690976..6691098 1580..1458 615 100 Minus
2L 23513712 2L 6697010..6697128 1457..1339 595 100 Minus
2L 23513712 2L 6700553..6700622 560..491 350 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:06:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6689624..6690143 2095..1576 2600 100 Minus
2L 23513712 2L 6700181..6700501 876..556 1605 100 Minus
2L 23513712 2L 6708287..6708579 298..6 1450 99.6 Minus
2L 23513712 2L 6697262..6697459 1340..1143 990 100 Minus
2L 23513712 2L 6701750..6701946 493..297 985 100 Minus
2L 23513712 2L 6699765..6699903 1144..1006 695 100 Minus
2L 23513712 2L 6699987..6700117 1006..876 655 100 Minus
2L 23513712 2L 6690976..6691098 1580..1458 615 100 Minus
2L 23513712 2L 6697010..6697128 1457..1339 595 100 Minus
2L 23513712 2L 6700553..6700622 560..491 350 100 Minus
Blast to na_te.dros performed 2019-03-15 12:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 1029..1090 2019..2079 127 69.4 Plus

GH27479.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:36:39 Download gff for GH27479.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 6688686..6689200 1580..2094 100 <- Minus
chr2L 6690038..6690159 1458..1579 100 <- Minus
chr2L 6696072..6696189 1340..1457 100 <- Minus
chr2L 6696325..6696519 1145..1339 100 <- Minus
chr2L 6698829..6698966 1007..1144 100 <- Minus
chr2L 6699051..6699180 877..1006 100 <- Minus
chr2L 6699245..6699560 561..876 99 <- Minus
chr2L 6699617..6699683 494..560 100 <- Minus
chr2L 6700815..6701009 299..493 99 <- Minus
chr2L 6707336..6707629 1..298 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:53:23 Download gff for GH27479.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp-RE 1..1260 409..1668 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:40:05 Download gff for GH27479.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp-RE 1..1260 409..1668 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:46:21 Download gff for GH27479.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp-RD 1..1260 409..1668 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:17:27 Download gff for GH27479.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp-RE 1..1260 409..1668 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:04:45 Download gff for GH27479.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp-RD 1..1260 409..1668 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:53:22 Download gff for GH27479.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp-RD 28..2121 1..2094 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:40:05 Download gff for GH27479.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp-RD 28..2121 1..2094 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:46:21 Download gff for GH27479.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp-RD 29..2122 1..2094 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:17:28 Download gff for GH27479.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp-RD 28..2121 1..2094 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:04:45 Download gff for GH27479.complete
Subject Subject Range Query Range Percent Splice Strand
Tsp-RD 29..2122 1..2094 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:39 Download gff for GH27479.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6689625..6690139 1580..2094 100 <- Minus
2L 6690977..6691098 1458..1579 100 <- Minus
2L 6697010..6697127 1340..1457 100 <- Minus
2L 6697263..6697457 1145..1339 100 <- Minus
2L 6699765..6699902 1007..1144 100 <- Minus
2L 6699987..6700116 877..1006 100 <- Minus
2L 6700181..6700496 561..876 100 <- Minus
2L 6700553..6700619 494..560 100 <- Minus
2L 6701750..6701944 299..493 100 <- Minus
2L 6708287..6708580 1..298 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:39 Download gff for GH27479.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6689625..6690139 1580..2094 100 <- Minus
2L 6690977..6691098 1458..1579 100 <- Minus
2L 6697010..6697127 1340..1457 100 <- Minus
2L 6697263..6697457 1145..1339 100 <- Minus
2L 6699765..6699902 1007..1144 100 <- Minus
2L 6699987..6700116 877..1006 100 <- Minus
2L 6700181..6700496 561..876 100 <- Minus
2L 6700553..6700619 494..560 100 <- Minus
2L 6701750..6701944 299..493 100 <- Minus
2L 6708287..6708580 1..298 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:36:39 Download gff for GH27479.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6689625..6690139 1580..2094 100 <- Minus
2L 6690977..6691098 1458..1579 100 <- Minus
2L 6697010..6697127 1340..1457 100 <- Minus
2L 6697263..6697457 1145..1339 100 <- Minus
2L 6699765..6699902 1007..1144 100 <- Minus
2L 6699987..6700116 877..1006 100 <- Minus
2L 6700181..6700496 561..876 100 <- Minus
2L 6700553..6700619 494..560 100 <- Minus
2L 6701750..6701944 299..493 100 <- Minus
2L 6708287..6708580 1..298 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:46:21 Download gff for GH27479.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6699765..6699902 1007..1144 100 <- Minus
arm_2L 6699987..6700116 877..1006 100 <- Minus
arm_2L 6697263..6697457 1145..1339 100 <- Minus
arm_2L 6700181..6700496 561..876 100 <- Minus
arm_2L 6690977..6691098 1458..1579 100 <- Minus
arm_2L 6700553..6700619 494..560 100 <- Minus
arm_2L 6697010..6697127 1340..1457 100 <- Minus
arm_2L 6701750..6701944 299..493 100 <- Minus
arm_2L 6689625..6690139 1580..2094 100 <- Minus
arm_2L 6708287..6708580 1..298 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:53:04 Download gff for GH27479.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6689625..6690139 1580..2094 100 <- Minus
2L 6690977..6691098 1458..1579 100 <- Minus
2L 6697010..6697127 1340..1457 100 <- Minus
2L 6697263..6697457 1145..1339 100 <- Minus
2L 6699765..6699902 1007..1144 100 <- Minus
2L 6699987..6700116 877..1006 100 <- Minus
2L 6700181..6700496 561..876 100 <- Minus
2L 6700553..6700619 494..560 100 <- Minus
2L 6701750..6701944 299..493 100 <- Minus
2L 6708287..6708580 1..298 98   Minus

GH27479.pep Sequence

Translation from 408 to 1667

> GH27479.pep
MNWTRVLLIGLTALALTFVDVASLSLDPVASAELEQFIRKGDVVISTRHI
RPRRKLHISIEALFMIDFPMLKHKMSFFLDRKQQRVTLDISANGATESRN
FEIPNINETSTIRSLALQFSKNRITLHVDCKASTHHDIDMNLAKLYTQMD
DPVIKLFRERKYPLHFDGDMEHSLQRANCQKGNHRRGNRRMLRNKITERE
KNKKRDVRGWYEPTIAREGVVDHRHQEVPTDVERGDIPVLNGDCEDALAR
SLSDLLALVKLLREDVAHQRQEIAYLRMLLENCAGCKNPLTTDNQLRIEP
DCRSANPCYPGVECLDSAAGPRCGHCPLGFIGDGKSCKPGVTCAHHMCYP
GVQCHDTVNGAQCDSCPAGYEGDGRTCSLRNPCLDTPCPSGNILVPSHNV
QHYQRQSQYTARKYSVVTN*

GH27479.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14952-PA 1060 GF14952-PA 1..404 1..404 1917 90.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:12:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23594-PA 1060 GG23594-PA 1..391 1..391 2073 99 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:12:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11027-PA 1060 GH11027-PA 1..391 1..391 1795 86.5 Plus
Dgri\GH15085-PA 3606 GH15085-PA 287..375 300..378 154 40.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp-PE 419 CG11326-PE 1..419 1..419 2251 100 Plus
Tsp-PC 419 CG11326-PC 1..419 1..419 2251 100 Plus
Tsp-PD 419 CG11326-PD 1..419 1..419 2251 100 Plus
Tsp-PF 1060 CG11326-PF 1..391 1..391 2104 100 Plus
Tsp-PA 1060 CG11326-PA 1..391 1..391 2104 100 Plus
CG42255-PB 3613 CG42255-PB 299..374 306..378 164 41 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17544-PA 1060 GI17544-PA 1..391 1..391 1819 87.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:12:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25970-PA 1060 GL25970-PA 1..391 1..391 1972 93.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10921-PA 1060 GA10921-PA 1..391 1..391 1972 93.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13946-PA 1036 GM13946-PA 1..367 1..391 1887 92.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:12:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22550-PA 1060 GD22550-PA 1..391 1..391 2090 99.7 Plus
Dsim\GD12774-PA 3873 GD12774-PA 298..374 305..378 156 40.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15486-PA 1061 GJ15486-PA 1..392 1..391 1814 87.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:12:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24219-PA 1057 GK24219-PA 1..390 1..391 1753 85.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:13:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18413-PA 1060 GE18413-PA 1..391 1..391 2071 98.7 Plus

GH27479.hyp Sequence

Translation from 408 to 1667

> GH27479.hyp
MNWTRVLLIGLTALALTFVDVASLSLDPVASAELEQFIRKGDVVISTRHI
RPRRKLHISIEALFMIDFPMLKHKMSFFLDRKQQRVTLDISANGATESRN
FEIPNINETSTIRSLALQFSKNRITLHVDCKASTHHDIDMNLAKLYTQMD
DPVIKLFRERKYPLHFDGDMEHSLQRANCQKGNHRRGNRRMLRNKITERE
KNKKRDVRGWYEPTIAREGVVDHRHQEVPTDVERGDIPVLNGDCEDALAR
SLSDLLALVKLLREDVAHQRQEIAYLRMLLENCAGCKNPLTTDNQLRIEP
DCRSANPCYPGVECLDSAAGPRCGHCPLGFIGDGKSCKPGVTCAHHMCYP
GVQCHDTVNGAQCDSCPAGYEGDGRTCSLRNPCLDTPCPSGNILVPSHNV
QHYQRQSQYTARKYSVVTN*

GH27479.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:42:40
Subject Length Description Subject Range Query Range Score Percent Strand
Tsp-PE 419 CG11326-PE 1..419 1..419 2251 100 Plus
Tsp-PC 419 CG11326-PC 1..419 1..419 2251 100 Plus
Tsp-PD 419 CG11326-PD 1..419 1..419 2251 100 Plus
Tsp-PF 1060 CG11326-PF 1..391 1..391 2104 100 Plus
Tsp-PA 1060 CG11326-PA 1..391 1..391 2104 100 Plus