BDGP Sequence Production Resources |
Search the DGRC for GH27479
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 274 |
Well: | 79 |
Vector: | pOT2 |
Associated Gene/Transcript | Tsp-RC |
Protein status: | GH27479.pep: gold |
Preliminary Size: | 2262 |
Sequenced Size: | 2112 |
Gene | Date | Evidence |
---|---|---|
CG11326 | 2001-01-01 | Release 2 assignment |
CG11326 | 2001-11-08 | Blastp of sequenced clone |
Tsp | 2008-04-29 | Release 5.5 accounting |
Tsp | 2008-08-15 | Release 5.9 accounting |
Tsp | 2008-12-18 | 5.12 accounting |
2112 bp (2112 high quality bases) assembled on 2001-11-08
GenBank Submission: AY069229
> GH27479.complete AAGACGTGTGAAGATACCCTTGCGACGTGTTTGATCTTTCGCTCTGCAAA AGTACAACATAATAAAAGTGTCTGTGCGTGCGTCCAGGAAAAAGCGGCGG AAAAGTGTGGCAATACTCGTAAAAATAACTCAGGTCGTTTCCATTCTAAA TTGCGCGTTGACAGCCGCAAGTGGCGCAAACGAGCCGCACAAACAACAAG GAGCTGTCAGTTCCGTCCCGCCAAGTGGATCACTTGGATCACATCCACAT CCGCAGTGGGGGCACCTCTAGAGCAAGAGCAGCGTCCTTGACCACGAGCG GACGGTAAAGATTTTGGAGTGAGGCGCTCATACCCCACGGTCCATCACTC CCGCACCCCCATCCATTGCTTCCGAAGATCACAGAAGACACCAGCAACAA CGAACACGATGAATTGGACGCGCGTGCTGTTAATCGGGTTGACCGCCTTG GCGCTGACATTTGTGGATGTTGCATCACTCTCACTCGATCCAGTTGCTTC TGCTGAACTGGAGCAGTTTATACGCAAAGGAGATGTGGTCATATCAACGC GACACATTAGACCTCGTCGAAAGTTGCACATATCCATAGAAGCACTCTTC ATGATCGACTTCCCGATGCTGAAGCACAAGATGTCCTTCTTCCTGGACCG CAAACAGCAGCGGGTAACGTTGGACATTAGTGCGAACGGAGCCACCGAGT CGCGCAACTTCGAGATACCCAACATCAATGAGACAAGCACCATCCGATCC CTGGCACTGCAGTTCTCCAAGAATCGCATAACGCTCCATGTGGACTGCAA GGCGAGCACGCATCACGACATCGACATGAACCTGGCCAAGCTGTACACCC AGATGGACGATCCGGTGATCAAGCTGTTCCGTGAGCGCAAGTATCCCCTT CACTTCGACGGGGACATGGAGCACTCCCTGCAGCGGGCCAATTGCCAGAA GGGCAACCATCGTCGTGGCAATCGTCGCATGCTGCGCAACAAGATCACCG AGCGTGAGAAGAACAAGAAGCGCGATGTGCGCGGCTGGTATGAGCCAACG ATCGCCCGGGAAGGAGTCGTGGATCACAGACACCAGGAGGTGCCAACGGA CGTGGAGCGCGGTGATATTCCCGTTCTGAATGGCGATTGCGAAGACGCCC TCGCACGATCGCTCAGCGATTTACTGGCTCTGGTGAAGCTGCTCCGCGAA GACGTCGCCCACCAGCGCCAGGAGATTGCCTACCTGCGTATGCTCCTGGA GAACTGTGCCGGCTGCAAGAATCCCCTCACCACCGACAACCAACTGCGCA TCGAGCCCGACTGCCGTTCCGCCAATCCCTGTTATCCTGGAGTGGAGTGC TTGGACTCGGCGGCCGGTCCCCGATGTGGCCACTGTCCCCTTGGCTTCAT TGGCGATGGCAAGAGCTGCAAGCCGGGCGTTACCTGCGCCCATCACATGT GCTATCCAGGCGTTCAGTGTCACGATACCGTGAATGGAGCCCAGTGTGAC TCCTGTCCAGCCGGCTACGAAGGTGATGGACGCACATGTTCGCTACGTAA TCCTTGCCTGGACACACCGTGCCCCTCAGGCAACATTCTAGTGCCCTCGC ATAATGTGCAACACTATCAGAGGCAGAGCCAGTACACCGCCCGAAAATAC TCGGTCGTTACGAACTAATCCGCGGAGGAAGGGACTATTGCAACGTTTTC GGCTGAGCTATGATACACAACTAAAGCTAAACAAGTACAGAGCGTAGAAA GTGCACATATTGAATTACTACTTTATAAAATAGTCATAAGTTGTAAGCTC TCCGATTGGCGAACAGCGGAAATTCATAGTATTAGCAATTATCATTTGAA AGCAGACGCAGCTCCAGCGGAAAATCGTGAGATAATATCATTGAAAAGCT CTTGTAGAATAGATAACTAAATATGTATATGTACGTCCCAATCAAATGCC CAGAAAGTGGAGTCTATAAACGTGTAACAAAATTTGCTTGCCCCGCCTGA AATCTCCCAATTATTGTAATAAACTATGAATATTATTATAACAAAATGTA CGCTGTAATTTTTGGTATTTAATAAATAAACTCCATCATTGGCCAAAAAA AAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 6688686..6689204 | 2094..1576 | 2595 | 100 | Minus |
chr2L | 23010047 | chr2L | 6699245..6699565 | 876..556 | 1560 | 99.1 | Minus |
chr2L | 23010047 | chr2L | 6707336..6707628 | 298..6 | 1450 | 99.7 | Minus |
chr2L | 23010047 | chr2L | 6696324..6696521 | 1340..1143 | 990 | 100 | Minus |
chr2L | 23010047 | chr2L | 6700815..6701011 | 493..297 | 970 | 99.5 | Minus |
chr2L | 23010047 | chr2L | 6698829..6698967 | 1144..1006 | 695 | 100 | Minus |
chr2L | 23010047 | chr2L | 6699051..6699181 | 1006..876 | 655 | 100 | Minus |
chr2L | 23010047 | chr2L | 6690037..6690159 | 1580..1458 | 615 | 100 | Minus |
chr2L | 23010047 | chr2L | 6696072..6696190 | 1457..1339 | 595 | 100 | Minus |
chr2L | 23010047 | chr2L | 6699617..6699686 | 560..491 | 350 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6689624..6690143 | 2095..1576 | 2600 | 100 | Minus |
2L | 23513712 | 2L | 6700181..6700501 | 876..556 | 1605 | 100 | Minus |
2L | 23513712 | 2L | 6708287..6708579 | 298..6 | 1450 | 99.7 | Minus |
2L | 23513712 | 2L | 6697262..6697459 | 1340..1143 | 990 | 100 | Minus |
2L | 23513712 | 2L | 6701750..6701946 | 493..297 | 985 | 100 | Minus |
2L | 23513712 | 2L | 6699765..6699903 | 1144..1006 | 695 | 100 | Minus |
2L | 23513712 | 2L | 6699987..6700117 | 1006..876 | 655 | 100 | Minus |
2L | 23513712 | 2L | 6690976..6691098 | 1580..1458 | 615 | 100 | Minus |
2L | 23513712 | 2L | 6697010..6697128 | 1457..1339 | 595 | 100 | Minus |
2L | 23513712 | 2L | 6700553..6700622 | 560..491 | 350 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 6689624..6690143 | 2095..1576 | 2600 | 100 | Minus |
2L | 23513712 | 2L | 6700181..6700501 | 876..556 | 1605 | 100 | Minus |
2L | 23513712 | 2L | 6708287..6708579 | 298..6 | 1450 | 99.6 | Minus |
2L | 23513712 | 2L | 6697262..6697459 | 1340..1143 | 990 | 100 | Minus |
2L | 23513712 | 2L | 6701750..6701946 | 493..297 | 985 | 100 | Minus |
2L | 23513712 | 2L | 6699765..6699903 | 1144..1006 | 695 | 100 | Minus |
2L | 23513712 | 2L | 6699987..6700117 | 1006..876 | 655 | 100 | Minus |
2L | 23513712 | 2L | 6690976..6691098 | 1580..1458 | 615 | 100 | Minus |
2L | 23513712 | 2L | 6697010..6697128 | 1457..1339 | 595 | 100 | Minus |
2L | 23513712 | 2L | 6700553..6700622 | 560..491 | 350 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 1029..1090 | 2019..2079 | 127 | 69.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 6688686..6689200 | 1580..2094 | 100 | <- | Minus |
chr2L | 6690038..6690159 | 1458..1579 | 100 | <- | Minus |
chr2L | 6696072..6696189 | 1340..1457 | 100 | <- | Minus |
chr2L | 6696325..6696519 | 1145..1339 | 100 | <- | Minus |
chr2L | 6698829..6698966 | 1007..1144 | 100 | <- | Minus |
chr2L | 6699051..6699180 | 877..1006 | 100 | <- | Minus |
chr2L | 6699245..6699560 | 561..876 | 99 | <- | Minus |
chr2L | 6699617..6699683 | 494..560 | 100 | <- | Minus |
chr2L | 6700815..6701009 | 299..493 | 99 | <- | Minus |
chr2L | 6707336..6707629 | 1..298 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp-RE | 1..1260 | 409..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp-RE | 1..1260 | 409..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp-RD | 1..1260 | 409..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp-RE | 1..1260 | 409..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp-RD | 1..1260 | 409..1668 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp-RD | 28..2121 | 1..2094 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp-RD | 28..2121 | 1..2094 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp-RD | 29..2122 | 1..2094 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp-RD | 28..2121 | 1..2094 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Tsp-RD | 29..2122 | 1..2094 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6689625..6690139 | 1580..2094 | 100 | <- | Minus |
2L | 6690977..6691098 | 1458..1579 | 100 | <- | Minus |
2L | 6697010..6697127 | 1340..1457 | 100 | <- | Minus |
2L | 6697263..6697457 | 1145..1339 | 100 | <- | Minus |
2L | 6699765..6699902 | 1007..1144 | 100 | <- | Minus |
2L | 6699987..6700116 | 877..1006 | 100 | <- | Minus |
2L | 6700181..6700496 | 561..876 | 100 | <- | Minus |
2L | 6700553..6700619 | 494..560 | 100 | <- | Minus |
2L | 6701750..6701944 | 299..493 | 100 | <- | Minus |
2L | 6708287..6708580 | 1..298 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6689625..6690139 | 1580..2094 | 100 | <- | Minus |
2L | 6690977..6691098 | 1458..1579 | 100 | <- | Minus |
2L | 6697010..6697127 | 1340..1457 | 100 | <- | Minus |
2L | 6697263..6697457 | 1145..1339 | 100 | <- | Minus |
2L | 6699765..6699902 | 1007..1144 | 100 | <- | Minus |
2L | 6699987..6700116 | 877..1006 | 100 | <- | Minus |
2L | 6700181..6700496 | 561..876 | 100 | <- | Minus |
2L | 6700553..6700619 | 494..560 | 100 | <- | Minus |
2L | 6701750..6701944 | 299..493 | 100 | <- | Minus |
2L | 6708287..6708580 | 1..298 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6689625..6690139 | 1580..2094 | 100 | <- | Minus |
2L | 6690977..6691098 | 1458..1579 | 100 | <- | Minus |
2L | 6697010..6697127 | 1340..1457 | 100 | <- | Minus |
2L | 6697263..6697457 | 1145..1339 | 100 | <- | Minus |
2L | 6699765..6699902 | 1007..1144 | 100 | <- | Minus |
2L | 6699987..6700116 | 877..1006 | 100 | <- | Minus |
2L | 6700181..6700496 | 561..876 | 100 | <- | Minus |
2L | 6700553..6700619 | 494..560 | 100 | <- | Minus |
2L | 6701750..6701944 | 299..493 | 100 | <- | Minus |
2L | 6708287..6708580 | 1..298 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 6699765..6699902 | 1007..1144 | 100 | <- | Minus |
arm_2L | 6699987..6700116 | 877..1006 | 100 | <- | Minus |
arm_2L | 6697263..6697457 | 1145..1339 | 100 | <- | Minus |
arm_2L | 6700181..6700496 | 561..876 | 100 | <- | Minus |
arm_2L | 6690977..6691098 | 1458..1579 | 100 | <- | Minus |
arm_2L | 6700553..6700619 | 494..560 | 100 | <- | Minus |
arm_2L | 6697010..6697127 | 1340..1457 | 100 | <- | Minus |
arm_2L | 6701750..6701944 | 299..493 | 100 | <- | Minus |
arm_2L | 6689625..6690139 | 1580..2094 | 100 | <- | Minus |
arm_2L | 6708287..6708580 | 1..298 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 6689625..6690139 | 1580..2094 | 100 | <- | Minus |
2L | 6690977..6691098 | 1458..1579 | 100 | <- | Minus |
2L | 6697010..6697127 | 1340..1457 | 100 | <- | Minus |
2L | 6697263..6697457 | 1145..1339 | 100 | <- | Minus |
2L | 6699765..6699902 | 1007..1144 | 100 | <- | Minus |
2L | 6699987..6700116 | 877..1006 | 100 | <- | Minus |
2L | 6700181..6700496 | 561..876 | 100 | <- | Minus |
2L | 6700553..6700619 | 494..560 | 100 | <- | Minus |
2L | 6701750..6701944 | 299..493 | 100 | <- | Minus |
2L | 6708287..6708580 | 1..298 | 98 | Minus |
Translation from 408 to 1667
> GH27479.pep MNWTRVLLIGLTALALTFVDVASLSLDPVASAELEQFIRKGDVVISTRHI RPRRKLHISIEALFMIDFPMLKHKMSFFLDRKQQRVTLDISANGATESRN FEIPNINETSTIRSLALQFSKNRITLHVDCKASTHHDIDMNLAKLYTQMD DPVIKLFRERKYPLHFDGDMEHSLQRANCQKGNHRRGNRRMLRNKITERE KNKKRDVRGWYEPTIAREGVVDHRHQEVPTDVERGDIPVLNGDCEDALAR SLSDLLALVKLLREDVAHQRQEIAYLRMLLENCAGCKNPLTTDNQLRIEP DCRSANPCYPGVECLDSAAGPRCGHCPLGFIGDGKSCKPGVTCAHHMCYP GVQCHDTVNGAQCDSCPAGYEGDGRTCSLRNPCLDTPCPSGNILVPSHNV QHYQRQSQYTARKYSVVTN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14952-PA | 1060 | GF14952-PA | 1..404 | 1..404 | 1917 | 90.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23594-PA | 1060 | GG23594-PA | 1..391 | 1..391 | 2073 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11027-PA | 1060 | GH11027-PA | 1..391 | 1..391 | 1795 | 86.5 | Plus |
Dgri\GH15085-PA | 3606 | GH15085-PA | 287..375 | 300..378 | 154 | 40.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tsp-PE | 419 | CG11326-PE | 1..419 | 1..419 | 2251 | 100 | Plus |
Tsp-PC | 419 | CG11326-PC | 1..419 | 1..419 | 2251 | 100 | Plus |
Tsp-PD | 419 | CG11326-PD | 1..419 | 1..419 | 2251 | 100 | Plus |
Tsp-PF | 1060 | CG11326-PF | 1..391 | 1..391 | 2104 | 100 | Plus |
Tsp-PA | 1060 | CG11326-PA | 1..391 | 1..391 | 2104 | 100 | Plus |
CG42255-PB | 3613 | CG42255-PB | 299..374 | 306..378 | 164 | 41 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17544-PA | 1060 | GI17544-PA | 1..391 | 1..391 | 1819 | 87.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25970-PA | 1060 | GL25970-PA | 1..391 | 1..391 | 1972 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10921-PA | 1060 | GA10921-PA | 1..391 | 1..391 | 1972 | 93.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13946-PA | 1036 | GM13946-PA | 1..367 | 1..391 | 1887 | 92.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22550-PA | 1060 | GD22550-PA | 1..391 | 1..391 | 2090 | 99.7 | Plus |
Dsim\GD12774-PA | 3873 | GD12774-PA | 298..374 | 305..378 | 156 | 40.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15486-PA | 1061 | GJ15486-PA | 1..392 | 1..391 | 1814 | 87.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK24219-PA | 1057 | GK24219-PA | 1..390 | 1..391 | 1753 | 85.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE18413-PA | 1060 | GE18413-PA | 1..391 | 1..391 | 2071 | 98.7 | Plus |
Translation from 408 to 1667
> GH27479.hyp MNWTRVLLIGLTALALTFVDVASLSLDPVASAELEQFIRKGDVVISTRHI RPRRKLHISIEALFMIDFPMLKHKMSFFLDRKQQRVTLDISANGATESRN FEIPNINETSTIRSLALQFSKNRITLHVDCKASTHHDIDMNLAKLYTQMD DPVIKLFRERKYPLHFDGDMEHSLQRANCQKGNHRRGNRRMLRNKITERE KNKKRDVRGWYEPTIAREGVVDHRHQEVPTDVERGDIPVLNGDCEDALAR SLSDLLALVKLLREDVAHQRQEIAYLRMLLENCAGCKNPLTTDNQLRIEP DCRSANPCYPGVECLDSAAGPRCGHCPLGFIGDGKSCKPGVTCAHHMCYP GVQCHDTVNGAQCDSCPAGYEGDGRTCSLRNPCLDTPCPSGNILVPSHNV QHYQRQSQYTARKYSVVTN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tsp-PE | 419 | CG11326-PE | 1..419 | 1..419 | 2251 | 100 | Plus |
Tsp-PC | 419 | CG11326-PC | 1..419 | 1..419 | 2251 | 100 | Plus |
Tsp-PD | 419 | CG11326-PD | 1..419 | 1..419 | 2251 | 100 | Plus |
Tsp-PF | 1060 | CG11326-PF | 1..391 | 1..391 | 2104 | 100 | Plus |
Tsp-PA | 1060 | CG11326-PA | 1..391 | 1..391 | 2104 | 100 | Plus |