Clone GH27496 Report

Search the DGRC for GH27496

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:274
Well:96
Vector:pOT2
Associated Gene/TranscriptCG10420-RA
Protein status:GH27496.pep: gold
Preliminary Size:1779
Sequenced Size:1808

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10420 2001-01-01 Release 2 assignment
CG10420 2001-09-19 Blastp of sequenced clone
CG10420 2003-01-01 Sim4 clustering to Release 3
CG10420 2008-04-29 Release 5.5 accounting
CG10420 2008-08-15 Release 5.9 accounting
CG10420 2008-12-18 5.12 accounting

Clone Sequence Records

GH27496.complete Sequence

1808 bp (1808 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058471

> GH27496.complete
AAAACTCTCACGAAACTTACTTAAAACCAGGTGAAATAAAGACTGAATAC
ATTCTGGAGGCAAGACAAGCTGAAGCAGTATGAGTGGCAAGCAGGTAGTC
ATCCTTCTGGGCAGTGTCCTGATCCTGGGATGCTTACAAGTGGCAGCGGC
AACGGAAACGGATAACAAAACCAACGATTTCGTGGCCACCGACGAATGGC
AGACGATTGCGGAAGGTCAAGCTATTCCAAGGGGCCTGCACGTGCGCATC
AACCTACAAACGGGGCTCAAGGAAGCCAAACTCTTAGACGAAAGCGAACG
TGGCACGTCGCTGCAGAGTCAACCGGATGATCAGAATGCTCGGGAATCTC
ACGATGACAACGAACCCCTGGCTCTGGACTATAAACCGGACATAATCGAG
GAGTCTATACGGCGGGTCAAGGAGCAGAAGAAGAGCTATGCCGAGCTACG
CAAAGCGTACAAAGAGTTCCAGAAGAACTTTCGCACCGACGGAGAACTGA
TCGTCCAGTTAATCGATCAGTTTCGGAACTTCAGCAGAACGCCGCTAGAG
TCAGAGATGCGCTCCAAGCTGGACTGCCTGGAAAATCTGGAGTATTTGCT
CCATCAGATAGACAATGCCTTGATGTTCATTGATAATGGGGGATTGGATG
ATGTACTACTGCCCATTGTTGTGAACGATACCAGTACATCCCTGAGAGTG
TCGGCCATGCGTGTGTTGGGCTCGCTGGCGAGCAACAATCCCAAGGCCCA
GATCAAGGTGTTCGAAAAGAATTTCGGGTCTCATCTGGCTCAGATTCTGA
CCAGTTCCGGAAATGTCGGTGAGATCTCCGCTGCATTGCACGCCTTTGGA
GCCTTGTTGCGGAAATTTCCGCTAGCCCAGCAGCGAGTGCTTTCCACCTC
GGGTACACAGGCTCTGATCAAGGTGCTCCAGAGTCCGGATGTGGAGCTGC
GGAGCAAGGCGAAGGTAGTGACTCTCATAAGCGACCTAGTGCTGGAGAAG
CGGTCAGTGCTGGATGTCAGCAAAGATGATCCCGAAGCCTCATCCACAAT
GGCGCAATATGTGCTCTTGGACTTCGAGTCGTGGCTGAAAACGCCGGGCT
ACTGCGCGGCGGTGGACACTGTGCTAACCAAGGAGTTCCTGCTCCTCCTA
GAGCAACCGGAGGTGGTGGAACAGTTTGCCACCGCATTGGAGACCACCGA
AGATATGTGCACCAGCACGTGGTCGCAAAGTTCCGGTCTCAGGCATGCAC
TATTAACCGTTCGCAATCGGTATGCCAACAGCACGGACGAGTACCGACTG
GAGGTGTCCCAGATTTTGGCCAAACTGTGCGAGAGATTGTTCAACAAGCC
CAAGCACACCGAACTGTAATCCTAGCCAATTTACTATGTTATTTATGTTA
ATTTCATTTAATTGTAAGCTGAGTTGGAATGAAATTCGCAGCCAAACCAT
AGAATACGATAGCTAAGATGCCAAGTACTTGTGATGCAAAAATAATGCTC
TTTGTCATTAACTTAGGATAGCAATCAATCATGCCAAACATCTACAGGAT
TTTCGTTATCAAATATAGTCTCTTACTTAAGATTATTTTAAGTGTGATTT
TTTTTTAATAGGCAGACGATTCACCAACGAGCACATCAAAATAATTATGT
TGTTACACGTCATTAAACTAGCAAAAATTTGTATGCTACAGAATTGTTCT
CCAAACAGATTATGAATCCTTAAAGCCTTAAGTTCTTGTTTATTGTAGCT
ACAATAATAAAGCAATGACCTAATGTTTAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA

GH27496.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10420-RA 1903 CG10420-RA 126..1903 1..1778 8890 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 17:59:26
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 21056721..21058284 1778..214 7670 99.5 Minus
chr3R 27901430 chr3R 21058344..21058560 217..1 1025 98.2 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:10:52 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 17:59:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25233634..25235200 1780..214 7835 100 Minus
3R 32079331 3R 25235260..25235476 217..1 1085 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 24974465..24976031 1780..214 7835 100 Minus
3R 31820162 3R 24976091..24976307 217..1 1085 100 Minus
Blast to na_te.dros performed on 2019-03-16 17:59:24 has no hits.

GH27496.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:00:31 Download gff for GH27496.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21056721..21058282 216..1778 99 <- Minus
chr3R 21058346..21058560 1..215 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:58:54 Download gff for GH27496.complete
Subject Subject Range Query Range Percent Splice Strand
CG10420-RA 1..1290 80..1369 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:04:51 Download gff for GH27496.complete
Subject Subject Range Query Range Percent Splice Strand
CG10420-RA 1..1290 80..1369 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:05:50 Download gff for GH27496.complete
Subject Subject Range Query Range Percent Splice Strand
CG10420-RA 1..1290 80..1369 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:35:30 Download gff for GH27496.complete
Subject Subject Range Query Range Percent Splice Strand
CG10420-RA 1..1290 80..1369 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:25:24 Download gff for GH27496.complete
Subject Subject Range Query Range Percent Splice Strand
CG10420-RA 1..1290 80..1369 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:54:05 Download gff for GH27496.complete
Subject Subject Range Query Range Percent Splice Strand
CG10420-RA 43..1820 1..1778 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:04:50 Download gff for GH27496.complete
Subject Subject Range Query Range Percent Splice Strand
CG10420-RA 43..1820 1..1778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:05:50 Download gff for GH27496.complete
Subject Subject Range Query Range Percent Splice Strand
CG10420-RA 54..1831 1..1778 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:35:30 Download gff for GH27496.complete
Subject Subject Range Query Range Percent Splice Strand
CG10420-RA 43..1820 1..1778 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:25:24 Download gff for GH27496.complete
Subject Subject Range Query Range Percent Splice Strand
CG10420-RA 54..1831 1..1778 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:00:31 Download gff for GH27496.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25233636..25235198 216..1778 100 <- Minus
3R 25235262..25235476 1..215 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:00:31 Download gff for GH27496.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25233636..25235198 216..1778 100 <- Minus
3R 25235262..25235476 1..215 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:00:31 Download gff for GH27496.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25233636..25235198 216..1778 100 <- Minus
3R 25235262..25235476 1..215 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:05:50 Download gff for GH27496.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21059358..21060920 216..1778 100 <- Minus
arm_3R 21060984..21061198 1..215 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:12:30 Download gff for GH27496.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24974467..24976029 216..1778 100 <- Minus
3R 24976093..24976307 1..215 100   Minus

GH27496.hyp Sequence

Translation from 79 to 1368

> GH27496.hyp
MSGKQVVILLGSVLILGCLQVAAATETDNKTNDFVATDEWQTIAEGQAIP
RGLHVRINLQTGLKEAKLLDESERGTSLQSQPDDQNARESHDDNEPLALD
YKPDIIEESIRRVKEQKKSYAELRKAYKEFQKNFRTDGELIVQLIDQFRN
FSRTPLESEMRSKLDCLENLEYLLHQIDNALMFIDNGGLDDVLLPIVVND
TSTSLRVSAMRVLGSLASNNPKAQIKVFEKNFGSHLAQILTSSGNVGEIS
AALHAFGALLRKFPLAQQRVLSTSGTQALIKVLQSPDVELRSKAKVVTLI
SDLVLEKRSVLDVSKDDPEASSTMAQYVLLDFESWLKTPGYCAAVDTVLT
KEFLLLLEQPEVVEQFATALETTEDMCTSTWSQSSGLRHALLTVRNRYAN
STDEYRLEVSQILAKLCERLFNKPKHTEL*

GH27496.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10420-PA 429 CG10420-PA 1..429 1..429 2146 100 Plus

GH27496.pep Sequence

Translation from 79 to 1368

> GH27496.pep
MSGKQVVILLGSVLILGCLQVAAATETDNKTNDFVATDEWQTIAEGQAIP
RGLHVRINLQTGLKEAKLLDESERGTSLQSQPDDQNARESHDDNEPLALD
YKPDIIEESIRRVKEQKKSYAELRKAYKEFQKNFRTDGELIVQLIDQFRN
FSRTPLESEMRSKLDCLENLEYLLHQIDNALMFIDNGGLDDVLLPIVVND
TSTSLRVSAMRVLGSLASNNPKAQIKVFEKNFGSHLAQILTSSGNVGEIS
AALHAFGALLRKFPLAQQRVLSTSGTQALIKVLQSPDVELRSKAKVVTLI
SDLVLEKRSVLDVSKDDPEASSTMAQYVLLDFESWLKTPGYCAAVDTVLT
KEFLLLLEQPEVVEQFATALETTEDMCTSTWSQSSGLRHALLTVRNRYAN
STDEYRLEVSQILAKLCERLFNKPKHTEL*

GH27496.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17435-PA 424 GF17435-PA 1..424 1..429 1867 80 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:49:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12274-PA 429 GG12274-PA 1..429 1..429 2107 92.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14615-PA 425 GH14615-PA 1..425 1..429 1512 66.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
Sil1-PA 429 CG10420-PA 1..429 1..429 2146 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:49:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23669-PA 421 GI23669-PA 10..421 10..429 1532 69.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12619-PA 422 GL12619-PA 1..422 1..429 1619 72.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10307-PA 422 GA10307-PA 1..422 1..429 1609 72.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17740-PA 429 GM17740-PA 1..429 1..429 2214 97 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18223-PA 429 GD18223-PA 1..429 1..429 2228 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:49:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23229-PA 424 GJ23229-PA 6..424 6..429 1592 71.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:49:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13840-PA 418 GK13840-PA 4..418 14..429 1564 71.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:49:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10724-PA 428 GE10724-PA 1..428 1..429 2095 92.1 Plus