Clone GH27568 Report

Search the DGRC for GH27568

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:275
Well:68
Vector:pOT2
Associated Gene/Transcriptl(1)G0469-RA
Protein status:GH27568.pep: gold
Preliminary Size:1770
Sequenced Size:1642

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11595 2001-01-01 Release 2 assignment
CG12482 2001-01-01 Release 2 assignment
CG32597 2002-06-07 Blastp of sequenced clone
CG32597 2003-01-01 Sim4 clustering to Release 3
l(1)G0469 2008-04-29 Release 5.5 accounting
l(1)G0469 2008-08-15 Release 5.9 accounting
l(1)G0469 2008-12-18 5.12 accounting

Clone Sequence Records

GH27568.complete Sequence

1642 bp (1642 high quality bases) assembled on 2002-06-07

GenBank Submission: AY119552

> GH27568.complete
AAGAAGCAGCAGCAGCGAATCGAAGCGTAAAAAAAAAAAACAGAGCAAAT
TGAAAGAAGCACAGAACAAAACACAACACAACAAATTTAAATAAAATCCA
ACGCAAACAGCGAGAGAAAAGTTATTCCGGAAAACGCGCGGAAAAGTGCA
TTTCGAATTTCATTAATTTTTTTTCGAGTGAAAGTTGGGCGCTTCAGGCC
CAACAACGCCCACAATGAACCGTTCGAACAGCTTTGTCAGCTCGCTGAAA
TGGTGGCCACTGCAGGGTCACAACAACCAACCGGTGGCGCCACCTGCCAG
CGGTTACTCCCAATCGGCGCCCAGCTCGCCCACCTCCAATTGGCCACCGC
CACTGCAGCAGCATCAGAATCCCACAACCGGCACCGCCCACCGCCTACTG
CCGCCCAGCGGGCAAAAGAATGGAATTGCTGGCGGCACCGTGGGCGCCAC
ATTCGGCAGCAGTGTGGCAGTGCAAAAGCTGCGCGAATCCAAGTGGTTCA
AGCCCGAGGAGCAGCGCATCTTTTGCGCCGTCGTCGAGTGCGGTTTCGTG
GTCGAGATCCGCAGCAGCGCCGCAGCCGAGGCGGCCGCAGCTAACGCAGC
AGCAGCGGCCGCAGCAGCCGACACCGGTGACAACGACCTCGACGTGGACG
CTCTGGAGGAGCTCGACTGCCCACTGACCAACCACCCATCGCCGCCGCAT
CGCAATCACAGCCATAGTCACAGCCAAATCCAAAACCAATCCCAGCGGCT
GGTCATCCCGCGCAACGGTAGCAGTTTCCTGGAGACGCAGGACGAGAATG
AGACGCCTGTCGCCTCTTGGTATGGAATCGTGCTCTGCAAGGTGGCCAAA
GACAATAAACCCAAGCCGGAGACCATTGAGATATATTCGGTGAAAATCCG
TGAGAATGGTACATACAAGTTGATCAAGATGCAATTGGCGGATATTTGGA
GTCACGGATGGGAGCTGCGTATCAATAACTTTGCCGACAAGGAAAAGGTG
CCGCACAACGAGAAGGATATTCGCAATCAGGTGTCGGTGGCGCGCAAAGC
CAAACAGAGTCTGTGGAACAATAATAAGCATTTTGTGTACTGGTGCCGCT
ACGGAAGTCGTCAGCAGGATCTGCGAAAGCGACAGGTAACGACGAGTGCC
AATCACGTGCTGCTGCACCTGATCAATTGATAAGTCGAGCCGAGTCAGCC
GGAGTCCAATAAATGGACGTGGAGAAAATGAAATGAGAAATAGGAGCGTT
TGAAGCGCCGACACTGAAACCCATCCTTTTTCCTGCTCCTGCTCCTGCTA
CTGCACCATACCACCACCTTAATCCGCCACCCAAAAACTGTGCATTGATT
GCAGCAAAAAGACCGAAAAAAAACCCAAAGCAATGTAAAAACATGAAAAA
CCACACATCATACCGACCAAGTCATCATACATACTCAAAACTCTAGTACG
CAACGTGGACTAAAAACGTCAAAAACGAACTGAGGGAACCGGAAAAAAAG
AACCATTAACTTTTTCTAGGGCCCCGACCTATGCATCTATCTATGCACCC
ATCATTCAACTACCGATTCACGCTTGCTTTGCTCATACAAAAAAAAAAAA
AAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAAAAAAA

GH27568.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:51:38
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0469.c 2383 l(1)G0469.c 269..1862 1..1594 7970 100 Plus
l(1)G0469.d 2418 l(1)G0469.d 611..2204 1..1594 7970 100 Plus
l(1)G0469.a 3070 l(1)G0469.a 269..1862 1..1594 7970 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 14100985..14101838 851..1 4125 99.4 Minus
chrX 22417052 chrX 14096458..14097030 1594..1029 2525 96.5 Minus
chrX 22417052 chrX 14097156..14097339 1033..850 905 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:10:55 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:14:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 14210434..14211284 851..1 4255 100 Minus
X 23542271 X 14205903..14206468 1594..1029 2830 100 Minus
X 23542271 X 14206594..14206777 1033..850 920 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 14218532..14219382 851..1 4255 100 Minus
X 23527363 X 14214001..14214566 1594..1029 2830 100 Minus
X 23527363 X 14214692..14214875 1033..850 920 100 Minus
Blast to na_te.dros performed 2019-03-16 16:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
GATE 8507 GATE DME010298 8507bp Derived from AJ010298 (e1315889) (Rel. 56, Last updated, Version 1). 2346..2448 76..176 113 59.2 Plus

GH27568.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:15:42 Download gff for GH27568.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 14100985..14101217 619..851 100 == Minus
chrX 14096464..14096684 1368..1588 100 <- Minus
chrX 14096696..14097028 1031..1367 97 <- Minus
chrX 14097159..14097337 852..1030 99 <- Minus
chrX 14101276..14101734 102..560 99 -> Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:58:56 Download gff for GH27568.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RA 1..966 215..1180 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:28:05 Download gff for GH27568.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RA 1..966 215..1180 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:05:32 Download gff for GH27568.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RA 1..966 215..1180 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:18:34 Download gff for GH27568.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RA 1..966 215..1180 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:23:30 Download gff for GH27568.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RA 1..966 215..1180 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:56:57 Download gff for GH27568.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RA 172..1759 1..1588 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:28:05 Download gff for GH27568.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RA 172..1759 1..1588 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:05:32 Download gff for GH27568.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RD 174..1761 1..1588 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:18:34 Download gff for GH27568.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RA 172..1759 1..1588 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:23:30 Download gff for GH27568.complete
Subject Subject Range Query Range Percent Splice Strand
l(1)G0469-RD 174..1761 1..1588 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:15:42 Download gff for GH27568.complete
Subject Subject Range Query Range Percent Splice Strand
X 14205909..14206466 1031..1588 100 <- Minus
X 14206597..14206775 852..1030 100 <- Minus
X 14210434..14211284 1..851 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:15:42 Download gff for GH27568.complete
Subject Subject Range Query Range Percent Splice Strand
X 14205909..14206466 1031..1588 100 <- Minus
X 14206597..14206775 852..1030 100 <- Minus
X 14210434..14211284 1..851 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:15:42 Download gff for GH27568.complete
Subject Subject Range Query Range Percent Splice Strand
X 14205909..14206466 1031..1588 100 <- Minus
X 14206597..14206775 852..1030 100 <- Minus
X 14210434..14211284 1..851 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:05:32 Download gff for GH27568.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 14099942..14100499 1031..1588 100 <- Minus
arm_X 14100630..14100808 852..1030 100 <- Minus
arm_X 14104467..14105317 1..851 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:51:58 Download gff for GH27568.complete
Subject Subject Range Query Range Percent Splice Strand
X 14214007..14214564 1031..1588 100 <- Minus
X 14214695..14214873 852..1030 100 <- Minus
X 14218532..14219382 1..851 100   Minus

GH27568.hyp Sequence

Translation from 214 to 1179

> GH27568.hyp
MNRSNSFVSSLKWWPLQGHNNQPVAPPASGYSQSAPSSPTSNWPPPLQQH
QNPTTGTAHRLLPPSGQKNGIAGGTVGATFGSSVAVQKLRESKWFKPEEQ
RIFCAVVECGFVVEIRSSAAAEAAAANAAAAAAAADTGDNDLDVDALEEL
DCPLTNHPSPPHRNHSHSHSQIQNQSQRLVIPRNGSSFLETQDENETPVA
SWYGIVLCKVAKDNKPKPETIEIYSVKIRENGTYKLIKMQLADIWSHGWE
LRINNFADKEKVPHNEKDIRNQVSVARKAKQSLWNNNKHFVYWCRYGSRQ
QDLRKRQVTTSANHVLLHLIN*

GH27568.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:42:55
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0469-PD 321 CG32597-PD 1..321 1..321 1718 100 Plus
l(1)G0469-PA 321 CG32597-PA 1..321 1..321 1718 100 Plus
l(1)G0469-PC 338 CG32597-PC 1..309 1..309 1650 99.4 Plus

GH27568.pep Sequence

Translation from 214 to 1179

> GH27568.pep
MNRSNSFVSSLKWWPLQGHNNQPVAPPASGYSQSAPSSPTSNWPPPLQQH
QNPTTGTAHRLLPPSGQKNGIAGGTVGATFGSSVAVQKLRESKWFKPEEQ
RIFCAVVECGFVVEIRSSAAAEAAAANAAAAAAAADTGDNDLDVDALEEL
DCPLTNHPSPPHRNHSHSHSQIQNQSQRLVIPRNGSSFLETQDENETPVA
SWYGIVLCKVAKDNKPKPETIEIYSVKIRENGTYKLIKMQLADIWSHGWE
LRINNFADKEKVPHNEKDIRNQVSVARKAKQSLWNNNKHFVYWCRYGSRQ
QDLRKRQVTTSANHVLLHLIN*

GH27568.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF15991-PA 327 GF15991-PA 1..298 1..309 1038 75.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19469-PA 340 GG19469-PA 1..311 1..309 1329 90.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12456-PA 298 GH12456-PA 1..298 1..321 1067 71.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:15:13
Subject Length Description Subject Range Query Range Score Percent Strand
l(1)G0469-PD 321 CG32597-PD 1..321 1..321 1718 100 Plus
l(1)G0469-PA 321 CG32597-PA 1..321 1..321 1718 100 Plus
l(1)G0469-PC 338 CG32597-PC 1..309 1..309 1650 99.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15053-PA 313 GI15053-PA 1..284 1..309 1031 71.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:42:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13005-PA 293 GL13005-PA 1..293 1..321 723 56.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:42:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA25812-PA 293 GA25812-PA 1..293 1..321 1083 71.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM17566-PA 153 GM17566-PA 101..153 269..321 266 92.5 Plus
Dsec\GM17566-PA 153 GM17566-PA 1..62 1..59 265 83.9 Plus
Dsec\GM17566-PA 153 GM17566-PA 42..104 153..213 223 73 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24512-PA 304 GD24512-PA 1..279 1..278 1399 95 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:42:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14707-PA 311 GJ14707-PA 1..282 1..309 1036 73.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25177-PA 315 GK25177-PA 1..315 1..321 1074 73.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:42:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16123-PA 346 GE16123-PA 1..317 1..309 1574 94 Plus