Clone GH27640 Report

Search the DGRC for GH27640

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:276
Well:40
Vector:pOT2
Associated Gene/TranscriptCG8195-RA
Protein status:GH27640.pep: gold
Preliminary Size:2276
Sequenced Size:2285

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8195 2001-01-01 Release 2 assignment
CG8195 2001-09-19 Blastp of sequenced clone
CG8195 2003-01-01 Sim4 clustering to Release 3
CG8195 2008-04-29 Release 5.5 accounting
CG8195 2008-08-15 Release 5.9 accounting
CG8195 2008-12-18 5.12 accounting

Clone Sequence Records

GH27640.complete Sequence

2285 bp (2285 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058472

> GH27640.complete
TCCAGCTGTGCGGATAAAAAATCATAATCAGAATATCAGTATTATAACGC
ACATTACTCCCAAGAGTGTAATCTGAAAACCCACTTGAGTTAAGACAAAT
CCTAGAAAATAGAAAACCATAAATATTGTTTCCGCTCAACAAAACAAACA
CAAAGAAAACAATTGCGGCAGTGGGAAGGAAAAAAGTTCCGCCTTCAAAA
GAGGAATCAAGTGCTAAAATGACTACCTAAAGCCCAAGGTTTATCTGTGT
AAAATTCACGGACCACGGACCTTTTATCACTTTTGAAAGCAGAACCTAAA
GACACCGCAACAATGAAACTAAAACGCTGGCGGCACAAGCGTAAATAGTT
ATTTGTCAACGGATAACCGAAGGAGCAAGACATCCCCCAAAAGGCGGGAA
AAGAAGCTAAGTTCGTTTGGAAAACATTCGAAAAACAGGCGAATAATCAT
GCTAGGTCGCACACAACGTCTCCTGTTGGGCATATCAATACTGGTACTAG
TCGATGTGGTTTGGGTCTCATCCAGTGAGCTGACAAAGTTCCTGTACAAT
GAGGCCAATTTTGACAAGCCCTTCTTCTGCACATACTTCAAAACCTCCAT
GTTCAGCATTTACCTGCTAGTCATCGGTATCCTGGCTCCCTGGAAAGAGT
CATGCGAGCGACAGAATGGAAACTATGCTATGATGGAGCAGAATGCAGAT
GACGAGAATTATTACTCCAATCAGGCTGTTTTGGGAGACCCAACCTATGT
GCCCATCAGATCGCCTCACTTAGGAGCCGGAGGACAATCCAATGGCACCT
CAAACTCCATATCGGGCACCGAAAGCGATGATTCAAGTGTAAGAAGTGTG
CGCTTCAGCAAGATGGCCGAAGTCAGAGAGATGTCTGCCCACGAAGCCAC
CGATGCCTTAATGGCCAGGCTTTCGTATGCCGCCAGCTTGAGAATTAGGC
GCCAAAAGACACACCACAAAACGGCAAAGACTGCGCTACTCTTTTGTCTG
CTCTGGTTTGCGGCCAATTACTTCTTTCAGCTGGCCCTGGAAATGGACGA
GGCGGCCATGATAACACTGGTTAGCTCAACATCGTCATTCTTCATTATCT
GCCTGGCAGCCGTATTTCCCTCGGCAACAGGTGACAAGCTGACTATCACC
AAGGTGATTGCGGTGGCCATGAACATTGGCGGAGTGGTGGCCATCACCAT
GAACGACCTACACGATACCAAGATGACCAGAGGCGTCCTTTTAGCCCTTT
TCAGCGCTTTCTTCTATGCCGCCTATTTGGTTTTCGTGAAGCGAAAAAGC
GATACGGAGGAGAAGGTCGATATACCATTGTTTTTCGGTTTTGTTGGCCT
ATGGAATATGTTGCTTTTATGGCCAATATTCTTTATCCTCCACTTCACCA
AAATAGAAACCTTTGAGCTGCCCAGTCAAGGGCAGTTTGCCCTTCTATTT
TTGAACGGCTTAGTTGGCACTGTGCTGTCGGAGGCTCTTTGGCTGTGGGG
CTGCTTTTTGACATCCTCACTGATTGGCACGCTGGCAATGTCGCTACAGA
TTCCGCTAGCCATCCTGTTCGATGTCCTGCTGAAGAACAAACCGTATTCG
CCGATGTTCTACATGGGCTCGATACCCATCTTTGTGGCCCTGGTGTTCGT
TTCGCTATTGATGCGTAACGACGATTCCGACCCACTGATGAAGCTCTTTA
GGATTGTGTATAGAAAAGTCTGCCGGTGCCATAAGCCAAGCATTGTTAGG
GTCAACGATGACGAACAACAGGAGTCGCTGATAAGCAACAGCGATTAAAC
AATAGCAATAATCACGAATGGAGGCTTTTTGTAAAAGTCGGGCTTCTACA
AACTTTGAATGTTGCTCATTGCAATGCAATCTAAAACTTGGCTGTTTACG
AGTTCGTTTCGAATCGTTCTTAAATCATATTGGGACAAGTCCTGCACAAT
TTCCCTTCGGCCCTGATTTGTGTTTCTCATTTGTGCATTTTTCGTTGGAT
ATTATTGTGTTGCGAACTTACGTACAACTATTTATTATAATCTTACAAGT
GTATTTATTCTCTGTAAATAGCTTTAGATCCCACGAATACCGTTTATCTA
TGTGATAGTCTACAACGTTTTGCTGAACTCCACCTATAATTTATTTCCTC
GGTATTCACACTGCGCTTAGCTGTATAATTGTTGACTTCTCAATACAAGA
TGAAAAAACATATACACATATTGATAACTAATTACAATAAATAAAACTTG
TCTACCGTAAGCTTTAAAAAAAAAAAAAAAAAAAA

GH27640.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG8195-RA 2498 CG8195-RA 14..2282 1..2269 11345 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 17:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11450893..11451499 1339..733 3035 100 Minus
chr2R 21145070 chr2R 11449849..11450367 2265..1747 2595 100 Minus
chr2R 21145070 chr2R 11450422..11450841 1750..1331 2085 99.8 Minus
chr2R 21145070 chr2R 11451874..11452199 538..213 1630 100 Minus
chr2R 21145070 chr2R 11452720..11452938 219..1 1080 99.5 Minus
chr2R 21145070 chr2R 11451673..11451815 679..537 715 100 Minus
chr2R 21145070 chr2R 11451562..11451616 734..680 275 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:10:59 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 17:50:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15563741..15564347 1339..733 3035 100 Minus
2R 25286936 2R 15562693..15563215 2269..1747 2615 100 Minus
2R 25286936 2R 15563270..15563689 1750..1331 2085 99.8 Minus
2R 25286936 2R 15564722..15565047 538..213 1630 100 Minus
2R 25286936 2R 15565568..15565786 219..1 1080 99.5 Minus
2R 25286936 2R 15564521..15564663 679..537 715 100 Minus
2R 25286936 2R 15564410..15564464 734..680 275 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:44:02
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15564940..15565546 1339..733 3035 100 Minus
2R 25260384 2R 15563892..15564414 2269..1747 2615 100 Minus
2R 25260384 2R 15564469..15564888 1750..1331 2085 99.7 Minus
2R 25260384 2R 15565921..15566246 538..213 1630 100 Minus
2R 25260384 2R 15566767..15566985 219..1 1080 99.5 Minus
2R 25260384 2R 15565720..15565862 679..537 715 100 Minus
2R 25260384 2R 15565609..15565663 734..680 275 100 Minus
Blast to na_te.dros performed on 2019-03-15 17:50:57 has no hits.

GH27640.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 17:51:41 Download gff for GH27640.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11449849..11450364 1750..2265 100 <- Minus
chr2R 11450423..11450834 1338..1749 100 <- Minus
chr2R 11450895..11451498 734..1337 100 <- Minus
chr2R 11451563..11451616 680..733 100 <- Minus
chr2R 11451673..11451813 539..679 100 <- Minus
chr2R 11451874..11452198 214..538 100 <- Minus
chr2R 11452726..11452938 1..213 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:58:58 Download gff for GH27640.complete
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 1..1350 449..1798 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:04:52 Download gff for GH27640.complete
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 1..1350 449..1798 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:48:56 Download gff for GH27640.complete
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 1..1350 449..1798 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:35:32 Download gff for GH27640.complete
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 1..1350 449..1798 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:48:59 Download gff for GH27640.complete
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 1..1350 449..1798 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:54:07 Download gff for GH27640.complete
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 1..2265 1..2265 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:04:52 Download gff for GH27640.complete
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 1..2265 1..2265 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:48:56 Download gff for GH27640.complete
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 16..2280 1..2265 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:35:32 Download gff for GH27640.complete
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 1..2265 1..2265 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:48:59 Download gff for GH27640.complete
Subject Subject Range Query Range Percent Splice Strand
CG8195-RA 16..2280 1..2265 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:41 Download gff for GH27640.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15562697..15563212 1750..2265 100 <- Minus
2R 15563271..15563682 1338..1749 100 <- Minus
2R 15563743..15564346 734..1337 100 <- Minus
2R 15564411..15564464 680..733 100 <- Minus
2R 15564521..15564661 539..679 100 <- Minus
2R 15564722..15565046 214..538 100 <- Minus
2R 15565574..15565786 1..213 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:41 Download gff for GH27640.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15562697..15563212 1750..2265 100 <- Minus
2R 15563271..15563682 1338..1749 100 <- Minus
2R 15563743..15564346 734..1337 100 <- Minus
2R 15564411..15564464 680..733 100 <- Minus
2R 15564521..15564661 539..679 100 <- Minus
2R 15564722..15565046 214..538 100 <- Minus
2R 15565574..15565786 1..213 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 17:51:41 Download gff for GH27640.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15562697..15563212 1750..2265 100 <- Minus
2R 15563271..15563682 1338..1749 100 <- Minus
2R 15563743..15564346 734..1337 100 <- Minus
2R 15564411..15564464 680..733 100 <- Minus
2R 15564521..15564661 539..679 100 <- Minus
2R 15564722..15565046 214..538 100 <- Minus
2R 15565574..15565786 1..213 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:48:56 Download gff for GH27640.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11450202..11450717 1750..2265 100 <- Minus
arm_2R 11450776..11451187 1338..1749 100 <- Minus
arm_2R 11451248..11451851 734..1337 100 <- Minus
arm_2R 11451916..11451969 680..733 100 <- Minus
arm_2R 11452026..11452166 539..679 100 <- Minus
arm_2R 11452227..11452551 214..538 100 <- Minus
arm_2R 11453079..11453291 1..213 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:12:32 Download gff for GH27640.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15563896..15564411 1750..2265 100 <- Minus
2R 15564470..15564881 1338..1749 100 <- Minus
2R 15564942..15565545 734..1337 100 <- Minus
2R 15565610..15565663 680..733 100 <- Minus
2R 15565720..15565860 539..679 100 <- Minus
2R 15565921..15566245 214..538 100 <- Minus
2R 15566773..15566985 1..213 100   Minus

GH27640.pep Sequence

Translation from 448 to 1797

> GH27640.pep
MLGRTQRLLLGISILVLVDVVWVSSSELTKFLYNEANFDKPFFCTYFKTS
MFSIYLLVIGILAPWKESCERQNGNYAMMEQNADDENYYSNQAVLGDPTY
VPIRSPHLGAGGQSNGTSNSISGTESDDSSVRSVRFSKMAEVREMSAHEA
TDALMARLSYAASLRIRRQKTHHKTAKTALLFCLLWFAANYFFQLALEMD
EAAMITLVSSTSSFFIICLAAVFPSATGDKLTITKVIAVAMNIGGVVAIT
MNDLHDTKMTRGVLLALFSAFFYAAYLVFVKRKSDTEEKVDIPLFFGFVG
LWNMLLLWPIFFILHFTKIETFELPSQGQFALLFLNGLVGTVLSEALWLW
GCFLTSSLIGTLAMSLQIPLAILFDVLLKNKPYSPMFYMGSIPIFVALVF
VSLLMRNDDSDPLMKLFRIVYRKVCRCHKPSIVRVNDDEQQESLISNSD*

GH27640.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13002-PA 447 GF13002-PA 1..447 1..449 2228 94.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:49:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22346-PA 449 GG22346-PA 1..449 1..449 2368 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20331-PA 444 GH20331-PA 1..444 1..449 1781 76.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:47:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8195-PA 449 CG8195-PA 1..449 1..449 2295 100 Plus
CG42322-PJ 733 CG42322-PJ 305..555 180..432 164 23.4 Plus
CG42322-PI 733 CG42322-PI 305..555 180..432 164 23.4 Plus
CG42322-PN 743 CG42322-PN 305..555 180..432 164 23.4 Plus
CG42322-PD 578 CG31203-PE 305..522 180..401 157 23.3 Plus
CG42322-PM 578 CG42322-PM 305..522 180..401 157 23.3 Plus
CG42322-PL 578 CG42322-PL 305..522 180..401 157 23.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:49:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20002-PA 442 GI20002-PA 1..442 1..449 1832 77.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17316-PA 447 GL17316-PA 1..447 1..449 2154 90.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:49:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20887-PA 447 GA20887-PA 1..447 1..449 2161 90.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20134-PA 449 GM20134-PA 1..449 1..449 2370 98.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25611-PA 587 GD25611-PA 1..331 1..331 1755 99.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21251-PA 442 GJ21251-PA 1..442 1..449 1859 80.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:49:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21427-PA 448 GK21427-PA 1..446 1..448 2004 86.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:49:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14147-PA 451 GE14147-PA 1..451 1..449 2350 98 Plus

GH27640.hyp Sequence

Translation from 448 to 1797

> GH27640.hyp
MLGRTQRLLLGISILVLVDVVWVSSSELTKFLYNEANFDKPFFCTYFKTS
MFSIYLLVIGILAPWKESCERQNGNYAMMEQNADDENYYSNQAVLGDPTY
VPIRSPHLGAGGQSNGTSNSISGTESDDSSVRSVRFSKMAEVREMSAHEA
TDALMARLSYAASLRIRRQKTHHKTAKTALLFCLLWFAANYFFQLALEMD
EAAMITLVSSTSSFFIICLAAVFPSATGDKLTITKVIAVAMNIGGVVAIT
MNDLHDTKMTRGVLLALFSAFFYAAYLVFVKRKSDTEEKVDIPLFFGFVG
LWNMLLLWPIFFILHFTKIETFELPSQGQFALLFLNGLVGTVLSEALWLW
GCFLTSSLIGTLAMSLQIPLAILFDVLLKNKPYSPMFYMGSIPIFVALVF
VSLLMRNDDSDPLMKLFRIVYRKVCRCHKPSIVRVNDDEQQESLISNSD*

GH27640.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:43:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG8195-PA 449 CG8195-PA 1..449 1..449 2295 100 Plus
CG42322-PJ 733 CG42322-PJ 305..555 180..432 164 23.4 Plus
CG42322-PI 733 CG42322-PI 305..555 180..432 164 23.4 Plus
CG42322-PN 743 CG42322-PN 305..555 180..432 164 23.4 Plus
CG42322-PD 578 CG31203-PE 305..522 180..401 157 23.3 Plus