Clone GH27649 Report

Search the DGRC for GH27649

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:276
Well:49
Vector:pOT2
Associated Gene/TranscriptRab21-RC
Protein status:GH27649.pep: gold
Preliminary Size:1163
Sequenced Size:1048

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
Lost to the ancients 2009-02-14 I'm sure there was a reason

Clone Sequence Records

GH27649.complete Sequence

1048 bp assembled on 2009-02-14

GenBank Submission: BT058103.1

> GH27649.complete
CCACACTGGCGGTCTCGTAAAAACCTAATCTTTTCGATTACCTCTTGTTT
TTTTTTTGTTTTTCCGTGTCCTCTGAAAACTGATGCGTATCAAGGTAGGA
CACCTAGCTATTGGGAAACCACAATGAGCTCGAGCAGAACGAGGAACGGC
CCCACGCTTAATTTCAAGGCGGTGCTGCTGGGCGAAGGTTGTGTGGGCAA
GACGTCGCTGGTGCTGCGCTACATGGAAGACCGGTTCAATGCCCAGCACC
TAAGCACCCTGCAGGCTTCCTTTGTCAGCCGCAAGATGTCCCTGGAGGAT
GGGAGAAGGGCGCAGTTGAATATTTGGGACACGGCTGGTCAGGAGCGGTT
CCACGCCCTGGGACCCATCTACTATCGCGGCTCCGATGGCGCCCTGCTCG
TCTATGACATAACGGACCGAGACTCGTTCCAGAAGGTCAAATCCTGGGTG
CGGGAGCTCCGGCAAATGCGCGGCACGGAGATTGCCTTAATAATCGTCGG
CAACAAGACTGATTTGGAGGAACAGCGAGCAGTAACGCACGATGAGGCCC
TTCAATATGCGCGCACGGTTGGCGCTCAATATGTAGAAACTTCGGCCAAG
GAGAACGAGGGGGTGGCTGAGCTCTTCGAGCTCCTGACCCAGCTGATGCT
GGAGCAGTTGAGCCAACGGCAACCGGATGCGAGTCCACTTCGCCTCCAGA
ATCCGGATACGGATAACCTTAACAACTCCGATGACTCGGAGGCCCCGGAT
CCCGGAGATCCTGCGGGCCAGCGGTCCTGTTGCGGCATTTAGCCGTTCCC
ATTGTGATAGTAATCATAACTATAAAATAGTAGACCTTTAACCGATGTTG
ATCTTGTGTATATATTATACATAGATAGATATAAATATAAATACGCGTAT
TTTTATTATTCCCTATTATGGATCTTTAAAATCCTCACACATTTTTGTTT
ATTAATAAATATAAATATGTATTTCATTCGATTTTCTTGCCCTTCCTGAG
CGCCCAGTAATAAACAATCTTGTACTTGCAAAAAAAAAAAAAAAAAAA

GH27649.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:23:10
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-RC 1210 Rab21-RC 143..1172 1..1030 5150 100 Plus
Rab21.a 1111 Rab21.a 138..1073 95..1030 4680 100 Plus
Rab21-RA 1077 Rab21-RA 234..1077 186..1029 4220 100 Plus
Rab21-RA 1077 Rab21-RA 1..176 14..189 880 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 23:41:20
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 22408198..22409035 1029..186 4095 99.3 Minus
chrX 22417052 chrX 22409093..22409281 189..1 945 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:11:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 23:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 23012139..23012983 1030..186 4225 100 Minus
X 23542271 X 23013041..23013229 189..1 945 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:40:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 22997231..22998075 1030..186 4225 100 Minus
X 23527363 X 22998133..22998321 189..1 945 100 Minus
Blast to na_te.dros performed on 2019-03-15 23:41:18 has no hits.

GH27649.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 23:42:28 Download gff for GH27649.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 22408198..22409033 188..1029 99 <- Minus
chrX 22409095..22409281 1..187 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:05:38 Download gff for GH27649.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 1..669 124..792 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:34:44 Download gff for GH27649.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 1..669 124..792 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:30:48 Download gff for GH27649.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 1..669 124..792 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:45:48 Download gff for GH27649.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RD 1..669 124..792 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-02-14 15:17:20 Download gff for GH27649.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 31..1059 1..1029 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:34:43 Download gff for GH27649.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 31..1059 1..1029 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:30:48 Download gff for GH27649.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 36..1064 1..1029 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:45:48 Download gff for GH27649.complete
Subject Subject Range Query Range Percent Splice Strand
Rab21-RC 36..1064 1..1029 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:42:28 Download gff for GH27649.complete
Subject Subject Range Query Range Percent Splice Strand
X 23012140..23012981 188..1029 100 <- Minus
X 23013043..23013229 1..187 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:42:28 Download gff for GH27649.complete
Subject Subject Range Query Range Percent Splice Strand
X 23012140..23012981 188..1029 100 <- Minus
X 23013043..23013229 1..187 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 23:42:28 Download gff for GH27649.complete
Subject Subject Range Query Range Percent Splice Strand
X 23012140..23012981 188..1029 100 <- Minus
X 23013043..23013229 1..187 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:30:48 Download gff for GH27649.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 22414879..22415065 1..187 100   Minus
arm_X 22413976..22414817 188..1029 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:08:05 Download gff for GH27649.complete
Subject Subject Range Query Range Percent Splice Strand
X 22997232..22998073 188..1029 100 <- Minus
X 22998135..22998321 1..187 100   Minus

GH27649.hyp Sequence

Translation from 0 to 791

> GH27649.hyp
PHWRSRKNLIFSITSCFFFVFPCPLKTDAYQGRTPSYWETTMSSSRTRNG
PTLNFKAVLLGEGCVGKTSLVLRYMEDRFNAQHLSTLQASFVSRKMSLED
GRRAQLNIWDTAGQERFHALGPIYYRGSDGALLVYDITDRDSFQKVKSWV
RELRQMRGTEIALIIVGNKTDLEEQRAVTHDEALQYARTVGAQYVETSAK
ENEGVAELFELLTQLMLEQLSQRQPDASPLRLQNPDTDNLNNSDDSEAPD
PGDPAGQRSCCGI*

GH27649.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:43:10
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-PC 222 CG17515-PC 1..222 42..263 1141 100 Plus
Rab21-PD 222 CG17515-PD 1..222 42..263 1141 100 Plus
Rab21-PA 189 CG17515-PA 1..189 75..263 974 100 Plus
Rab5-PI 219 CG3664-PI 15..183 40..209 388 44.7 Plus
Rab5-PH 219 CG3664-PH 15..183 40..209 388 44.7 Plus

GH27649.pep Sequence

Translation from 0 to 791

> GH27649.pep
PHWRSRKNLIFSITSCFFFVFPCPLKTDAYQGRTPSYWETTMSSSRTRNG
PTLNFKAVLLGEGCVGKTSLVLRYMEDRFNAQHLSTLQASFVSRKMSLED
GRRAQLNIWDTAGQERFHALGPIYYRGSDGALLVYDITDRDSFQKVKSWV
RELRQMRGTEIALIIVGNKTDLEEQRAVTHDEALQYARTVGAQYVETSAK
ENEGVAELFELLTQLMLEQLSQRQPDASPLRLQNPDTDNLNNSDDSEAPD
PGDPAGQRSCCGI*

GH27649.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 11:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22152-PA 225 GF22152-PA 5..225 45..263 1009 85.5 Plus
Dana\GF15280-PA 219 GF15280-PA 22..183 47..209 397 46 Plus
Dana\GF23429-PA 208 GF23429-PA 1..166 42..209 373 44.6 Plus
Dana\GF11093-PA 220 GF11093-PA 22..194 55..229 366 39.4 Plus
Dana\GF20241-PA 204 GF20241-PA 8..204 53..262 358 34.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 11:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17497-PA 222 GG17497-PA 1..222 42..263 1133 95.9 Plus
Dere\GG24527-PA 219 GG24527-PA 22..183 47..209 397 46 Plus
Dere\GG10272-PA 208 GG10272-PA 1..166 42..209 373 44.6 Plus
Dere\GG22724-PA 220 GG22724-PA 22..194 55..229 365 39.4 Plus
Dere\GG24366-PA 214 GG24366-PA 12..194 55..234 347 39.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 11:13:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12858-PA 229 GH12858-PA 1..229 42..263 862 73.4 Plus
Dgri\GH13785-PA 216 GH13785-PA 4..182 34..209 400 43.9 Plus
Dgri\GH10191-PA 208 GH10191-PA 1..166 42..209 373 44.6 Plus
Dgri\GH24197-PA 220 GH24197-PA 22..194 55..229 366 39.4 Plus
Dgri\GH20651-PA 259 GH20651-PA 7..195 56..246 355 37.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:01
Subject Length Description Subject Range Query Range Score Percent Strand
Rab21-PC 222 CG17515-PC 1..222 42..263 1141 100 Plus
Rab21-PD 222 CG17515-PD 1..222 42..263 1141 100 Plus
Rab21-PA 189 CG17515-PA 1..189 75..263 974 100 Plus
Rab5-PI 219 CG3664-PI 15..183 40..209 388 44.7 Plus
Rab5-PH 219 CG3664-PH 15..183 40..209 388 44.7 Plus
Rab5-PG 219 CG3664-PG 15..183 40..209 388 44.7 Plus
Rab5-PE 219 CG3664-PE 15..183 40..209 388 44.7 Plus
Rab5-PC 219 CG3664-PC 15..183 40..209 388 44.7 Plus
Rab5-PD 219 CG3664-PD 15..183 40..209 388 44.7 Plus
Rab5-PF 219 CG3664-PF 15..183 40..209 388 44.7 Plus
Rab5-PB 219 CG3664-PB 15..183 40..209 388 44.7 Plus
Rab5-PA 219 CG3664-PA 15..183 40..209 388 44.7 Plus
Rab6-PB 208 CG6601-PB 2..166 44..209 363 44 Plus
Rab6-PA 208 CG6601-PA 2..166 44..209 363 44 Plus
Rab3-PB 220 CG7576-PB 22..194 55..229 357 39.4 Plus
Rab3-PA 220 CG7576-PA 22..194 55..229 357 39.4 Plus
Rab11-PA 214 CG5771-PA 12..194 55..234 344 39.1 Plus
Rab11-PB 214 CG5771-PB 12..194 55..234 344 39.1 Plus
Rab1-PA 205 CG3320-PA 12..165 55..209 339 41.3 Plus
Rab10-PA 204 CG17060-PA 8..203 53..261 338 34 Plus
Rab8-PC 207 CG8287-PC 9..182 55..229 335 37.7 Plus
Rab8-PA 207 CG8287-PA 9..182 55..229 335 37.7 Plus
Rab35-PB 201 CG9575-PB 9..200 55..260 331 34 Plus
Rab35-PD 201 CG9575-PD 9..200 55..260 331 34 Plus
Rab35-PA 201 CG9575-PA 9..200 55..260 331 34 Plus
Rab19-PB 219 CG7062-PP3-RB 22..191 55..228 326 40.3 Plus
Rab19-PA 219 CG7062-PA 22..191 55..228 326 40.3 Plus
RabX1-PA 261 CG3870-PA 7..195 56..244 325 36.1 Plus
Rab2-PB 213 CG3269-PB 7..173 55..222 324 37.5 Plus
Rab2-PA 213 CG3269-PA 7..173 55..222 324 37.5 Plus
Rab9Fb-PA 214 CG32670-PA 8..214 55..261 324 35 Plus
Rab35-PC 190 CG9575-PC 4..189 61..260 321 34.5 Plus
Rab14-PD 215 CG4212-PD 12..215 55..260 318 35.1 Plus
Rab14-PA 215 CG4212-PA 12..215 55..260 318 35.1 Plus
Rab14-PB 239 CG4212-PB 36..239 55..260 318 35.1 Plus
Rab4-PA 213 CG4921-PA 9..179 55..226 317 39.5 Plus
Rab4-PB 213 CG4921-PB 9..179 55..226 317 39.5 Plus
Rab18-PA 197 CG3129-PA 7..159 56..210 309 42.9 Plus
RabX2-PA 195 CG2885-PA 8..195 55..244 304 33.7 Plus
Rab23-PA 268 CG2108-PA 36..207 53..222 299 37.9 Plus
RabX4-PA 213 CG31118-PA 9..193 55..252 286 31.2 Plus
Rab7-PC 207 CG5915-PC 10..204 56..242 285 36 Plus
Rab7-PB 207 CG5915-PB 10..204 56..242 285 36 Plus
Rab7-PA 207 CG5915-PA 10..204 56..242 285 36 Plus
Rab39-PB 218 CG12156-PB 10..173 55..214 285 37.8 Plus
Rab39-PA 218 CG12156-PA 10..173 55..214 285 37.8 Plus
Rab30-PD 223 CG9100-PD 8..210 55..262 282 33.3 Plus
Rab30-PC 223 CG9100-PC 8..210 55..262 282 33.3 Plus
Rab30-PB 223 CG9100-PB 8..210 55..262 282 33.3 Plus
Rab30-PA 223 CG9100-PA 8..210 55..262 282 33.3 Plus
Rala-PB 197 CG2849-PB 2..182 44..226 277 37 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 11:13:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14949-PA 222 GI14949-PA 1..222 42..263 865 75.8 Plus
Dmoj\GI17188-PA 216 GI17188-PA 4..182 34..209 402 43.9 Plus
Dmoj\GI14260-PA 208 GI14260-PA 1..166 42..209 373 44.6 Plus
Dmoj\GI20173-PA 220 GI20173-PA 22..194 55..229 365 39.4 Plus
Dmoj\GI19016-PA 259 GI19016-PA 7..195 56..246 354 38.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 11:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16463-PA 223 GL16463-PA 1..223 42..263 911 77.3 Plus
Dper\GL19400-PA 218 GL19400-PA 4..182 34..209 397 43.9 Plus
Dper\GL18897-PA 208 GL18897-PA 1..166 42..209 373 44.6 Plus
Dper\GL17187-PA 220 GL17187-PA 22..194 55..229 366 39.4 Plus
Dper\GL21786-PA 214 GL21786-PA 12..194 55..234 347 39.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 11:13:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22589-PA 224 GA22589-PA 1..224 42..263 907 78.1 Plus
Dpse\GA17598-PA 218 GA17598-PA 4..182 34..209 397 43.9 Plus
Dpse\GA19714-PA 208 GA19714-PA 1..166 42..209 373 44.6 Plus
Dpse\GA20450-PA 220 GA20450-PA 22..194 55..229 366 39.4 Plus
Dpse\GA26078-PA 204 GA26078-PA 8..204 53..262 353 33.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 11:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10050-PA 224 GM10050-PA 1..224 42..263 1121 95.1 Plus
Dsec\GM18235-PA 219 GM18235-PA 22..183 47..209 397 46 Plus
Dsec\GM26307-PA 208 GM26307-PA 1..166 42..209 373 44.6 Plus
Dsec\GM20500-PA 220 GM20500-PA 22..194 55..229 365 39.4 Plus
Dsec\GM15065-PA 214 GM15065-PA 12..194 55..234 347 39.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 11:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22429-PA 83 GD22429-PA 1..83 42..124 423 95.2 Plus
Dsim\GD22841-PA 219 GD22841-PA 22..183 47..209 397 46 Plus
Dsim\GD19996-PA 205 GD19996-PA 12..165 55..209 343 41.3 Plus
Dsim\GD19397-PA 198 GD19397-PA 12..186 55..229 339 40.3 Plus
Dsim\GD12244-PA 207 GD12244-PA 9..182 55..229 339 37.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 11:14:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18919-PA 229 GJ18919-PA 1..229 42..263 894 75.5 Plus
Dvir\GJ22226-PA 216 GJ22226-PA 4..182 34..209 399 43.9 Plus
Dvir\GJ20647-PA 208 GJ20647-PA 1..166 42..209 373 44.6 Plus
Dvir\GJ20130-PA 220 GJ20130-PA 22..194 55..229 366 39.4 Plus
Dvir\GJ15815-PA 204 GJ15815-PA 8..204 53..262 355 34.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 11:14:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20025-PA 230 GK20025-PA 1..230 42..263 845 70.5 Plus
Dwil\GK15003-PA 223 GK15003-PA 1..223 42..263 715 63.2 Plus
Dwil\GK14984-PA 220 GK14984-PA 22..183 47..209 398 46 Plus
Dwil\GK21078-PA 208 GK21078-PA 1..166 42..209 373 44.6 Plus
Dwil\GK19661-PA 220 GK19661-PA 22..194 55..229 365 39.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 11:14:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15254-PA 222 GE15254-PA 1..222 42..263 1127 95 Plus
Dyak\GE15124-PA 219 GE15124-PA 22..183 47..209 397 46 Plus
Dyak\GE12402-PA 208 GE12402-PA 1..166 42..209 373 44.6 Plus
Dyak\GE13081-PA 220 GE13081-PA 22..194 55..229 365 39.4 Plus
Dyak\Rab1-PA 205 GE25003-PA 12..165 55..209 343 41.3 Plus