Clone GH27656 Report

Search the DGRC for GH27656

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:276
Well:56
Vector:pOT2
Associated Gene/Transcriptdisco-RA
Protein status:GH27656.pep: gold
Preliminary Size:3406
Sequenced Size:3276

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9908 2001-01-01 Release 2 assignment
CG9908 2002-12-10 Blastp of sequenced clone
CG9908 2003-01-01 Sim4 clustering to Release 3
disco 2008-04-29 Release 5.5 accounting
disco 2008-08-15 Release 5.9 accounting
disco 2008-12-18 5.12 accounting

Clone Sequence Records

GH27656.complete Sequence

3276 bp (3276 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003295

> GH27656.complete
CGACATTCGAAGAAGTGGATCTCTGCTGTCCCTGCTCTCCGCACATCCGC
ATCTTCGTCGCTACTTCGTTTGCCACTCCGCATATTCACATATTCGCATC
CGCATATTCGCGTCCAGTCCACTCTTCTCTCTGCCGCGCGACCCAGTGCA
TAAGTGTGCGTGCATACGAGCGTGTGTGTGTGTGTGTGTGTGTCATCGTC
AACTGTGAACGACCAACTTTTTTAATATCTCAGCAAAATGCAACAAAAAT
AAATGCACCACGGGCATGAAAACAACAACAGCACACAGCTCCAACAGTGA
ATTCTACCATCTGAATTTATCAACTTTTTACGCAACAAAATATCAAAACA
AAACAAAGCGAAAGAAACCCTTTTTTTTAAATCTCAAACCTGTGACAAAG
TGAGAAAATCTAAAACAAAAAAAAAAAACAGCAATAAACCAAAATACAAT
AAAATATCTACAACTCGCTGCTAAATTAGCAAAAGGCACCACCAGTCATC
GCCATCGCCATCGCCAGCGCGACCATAGAAACAAAATCCACCACAGACGA
CATGGAGCACATAATGAATCCGTTCATGTCACCGGCTTATCTGCTGGGCC
ATGGCCCACATTCCCACCAGCATGTGCACTCCCATCTACCGTCACACCCG
CAGCCAAATGCCGCCTCTCCGGCCAGCTCACCCGGCGGATCCAGTGGCTC
TGGATCGGGATCGGCAGCGGGATCGGGCACTGGATCAGGTTCATCCTTAA
AGCCTCGTCGCTGGGGCTCACCGCCCATCAATCTGGCCGGTCAGTTTATC
AATCCAGCCACGGGAAAGAAACGAGTACAGTGCTCCATTTGCTTCAAGAC
CTTCTGCGACAAGGGCGCCCTTAAGATTCACTTTTCGGCCGTGCATCTTC
GCGAGATGCACAAGTGCACGGTGGAGGGCTGCAATATGGTGTTCAGTTCG
AGGCGTTCGAGGAATCGCCATAGCGCCAATCCGAATCCCAAACTCCATTC
GCCACACATCCGGCGCAAGATCTCGCCGCACGATGGCCGCACTGCCCAGC
AGTTTCCGGTTTTCTCGCCCGGAACAGCCGCAGCAGCGGCCGCTGTCGCC
GGACGACTTCCGGTTGCCTTTCCCGGACTTCTGCCACCGCCGCCGCCGCA
TCATGGTCACCATCCGTACGTCATGTTCGGCGGACAGGCGGGTCTACATG
GCTTGGGCCTGCTTTCCACCGGCTGTCAGGATCCCGATTCTGGATCGGTG
GACAATGAACAGGATGCTGATCCCGAAGATGACAACGACTTTGTGTACGT
GGACATGCAGGCCAATAGCTCTAGTCCGGCGGCCTCCAGCGAGGATCAGG
AGGAACACGAACGGGATAATGAGCAGGATGAGGAGATGCACTGCAGCTTG
AGCCTGGCCAGCAGTAGTAGCATTGCCGCCGATGAGGAGCGGGCAGCTGA
CCAGCCATTGGATTTCAGCCTTCACAAGCGTCGCAAGTCGGAGCAGGATC
GGGAACAGGAGCAGGAGCAGGAGCAGGAACGGGAGCGGGAGGCGGAAAAG
GAGCAGGAACAGGATGTGGAATCCGACAAGGAGCACGAACCCGAACAGGA
GCATGAGCTGGAGCGTGAGAAGCGCTCGCCCAGCGATGCCTTCTCCATGG
ATCAGTTGCTGGGCAAGCGTAAGCGTCACGACAGCACCGCCTCCAGCTCC
GCCTGTTCCACGGCAGCCGCCTCCTCCGCCTCTAGTTCCTCCGCCAGCGC
TAGCGCCAATCCACCACAGACGAGCATCAAAATGGATCTGGACCCGGATA
GCGACAGTGCCTACATGACCAGCCGGCGGCAAATGCTCCCACTGCCCGTT
CTGGACCTCGAGGAGCATCATCATCTGCGCCTGCTGCAGACCCAGATGTT
TGCCGCCGCAGCGGCTGCCGCTGCCACCAGCCAGGCACCGCCCACCGCCT
TCCTGCCGGCGGGATCACCCGTGGATCTGGCCAAGGACTCGCCGCCCATG
TGGAGTCTCCTCTCCGAAATGTACCGCTCCATGCTGCTGAAGACACAGCA
CCAGCAATACAACCACCATCACCAGCTGCAGCAGCAACACCAGCAGGAGC
AGCATCATCATCTGACCCTGAGCCACCACCATCAGGAGCAGCACCATCAT
CTGGGTCATCACCACATGGGTCACCACCACCATCATCACCATCAGCACCA
CCAACAGCAGCCGCAACAGCAATCGCCGGCGGCCACGAATGCGCCGATTT
CCGTCTAATGTCCAGACTGCTGATCCATGGCGATGATTTCTAGATGATTT
CCTTAGTCAAATTTGTTTTTATATTTTTTTTTTGTGTGTGAATCGTATTT
TAAGAAGAATACATTTGGTGGCGTGCTGCATTACACAAAAAGGTGGAGCT
TCAGGTGGTGGGGCTGTGCCACAGCTTGACCATTAAATGGCTGGCACTCC
TCCTCAGGCGCGACCCCGCAACACCCGCAACCAATGCCACTAAGTACCCC
ACCCCCCCCTCTGAAAACTGGAATTGCTCCGAAACTAAGCTTTTTCTGCT
CGTACATGTGTTATATGGATTTTTTTTTTTTTTGGAAACCTATGTATAAT
GTATAATGTATACTGTAGTGCGACATCTAAGTGTATAGTATTCAATCCGT
TCCTCAGTGTGAATGTGCAGATGCATGAATGAGAGTGTGTGTGTGTGTGT
GTGTGGGATCCCAGGATCGGATCCAAAAAAAAAAAAAAATTAAAGTCTGT
CATCTGAAAAGCGGGCTGGGCAGTGCAGAAGCGGGGATTTTGGAACGGGT
TCCGTTTCCCTGCCCCCTCTATCGGTGTACAACGAAGTATTGATATTTAT
AACGAAATATATATTATGAATGGCATATATTAAATAGTTTTAAGACAATT
TTTTTCGTAGCCAATAAAACTATATTGTATTGTATAACTTGGATGTACTA
ACACAGCAAGCAAATTCTATTGAAACATATCCCCCCCGTGTGTTAAAAAA
ATAAAAAACCAGAAGAGATTCAATTCAACCAATCCCTAAAGAAAAAAAAT
AAACCCAAAAAAAAAAAAACAAAATTATAAAAATCCATCGCAAAGGTTGA
TAGATCGTAGGTGAACGAAAATGTTATTGCTATCGCAAACGAAAATTCCT
CCCGACGATTGTGTACTGTATTACAACAAGATTTTAAGTTTTTTATTAAC
AAATAAACAACGGCAAAATTGAAGAAACATGTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAA

GH27656.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
disco-RB 3349 disco-RB 116..3348 1..3234 16130 99.9 Plus
disco-RA 3349 disco-RA 116..3348 1..3234 16130 99.9 Plus
disco-r-RA 5034 disco-r-RA 2265..2464 846..1045 625 87.5 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:14:52
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16100369..16103118 3232..484 13495 99.8 Minus
chrX 22417052 chrX 16106021..16106504 486..1 2330 99.6 Minus
chrX 22417052 chrX 16011369..16011622 1045..792 655 83.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:11:03 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:14:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16210596..16213346 3234..484 13755 100 Minus
X 23542271 X 16216250..16216734 486..1 2380 99.8 Minus
X 23542271 X 16121552..16121805 1045..792 655 83.9 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16218694..16221444 3234..484 13755 100 Minus
X 23527363 X 16224348..16224832 486..1 2390 99.7 Minus
X 23527363 X 16129650..16129849 1045..846 625 87.5 Minus
Blast to na_te.dros performed 2019-03-16 16:14:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3280..3394 236..353 141 60.2 Plus
1360 3409 1360 1360 3409bp 3247..3291 2938..2981 123 77.8 Plus
gypsy4 6852 gypsy4 GYPSY4 6852bp 5034..5080 2339..2292 120 75 Minus

GH27656.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:15:53 Download gff for GH27656.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16101557..16102031 1571..2045 99 == Minus
chrX 16102113..16103116 486..1489 100 <- Minus
chrX 16106022..16106504 1..485 91   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:58:59 Download gff for GH27656.complete
Subject Subject Range Query Range Percent Splice Strand
disco-RB 1..1707 552..2258 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:02:23 Download gff for GH27656.complete
Subject Subject Range Query Range Percent Splice Strand
disco-RB 1..1707 552..2258 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:05:57 Download gff for GH27656.complete
Subject Subject Range Query Range Percent Splice Strand
disco-RA 1..1707 552..2258 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:52:45 Download gff for GH27656.complete
Subject Subject Range Query Range Percent Splice Strand
disco-RB 1..1707 552..2258 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:23:49 Download gff for GH27656.complete
Subject Subject Range Query Range Percent Splice Strand
disco-RA 1..1707 552..2258 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:20:30 Download gff for GH27656.complete
Subject Subject Range Query Range Percent Splice Strand
disco-RA 1..3231 1..3232 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:02:23 Download gff for GH27656.complete
Subject Subject Range Query Range Percent Splice Strand
disco-RA 1..3231 1..3232 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:05:57 Download gff for GH27656.complete
Subject Subject Range Query Range Percent Splice Strand
disco-RA 12..3242 1..3232 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:52:45 Download gff for GH27656.complete
Subject Subject Range Query Range Percent Splice Strand
disco-RA 1..3231 1..3232 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:23:49 Download gff for GH27656.complete
Subject Subject Range Query Range Percent Splice Strand
disco-RA 17..3247 1..3232 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:15:53 Download gff for GH27656.complete
Subject Subject Range Query Range Percent Splice Strand
X 16210598..16213344 486..3232 100 <- Minus
X 16216251..16216734 1..485 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:15:53 Download gff for GH27656.complete
Subject Subject Range Query Range Percent Splice Strand
X 16210598..16213344 486..3232 100 <- Minus
X 16216251..16216734 1..485 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:15:53 Download gff for GH27656.complete
Subject Subject Range Query Range Percent Splice Strand
X 16210598..16213344 486..3232 100 <- Minus
X 16216251..16216734 1..485 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:05:57 Download gff for GH27656.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16104631..16107377 486..3232 100 <- Minus
arm_X 16110284..16110767 1..485 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:24:48 Download gff for GH27656.complete
Subject Subject Range Query Range Percent Splice Strand
X 16218696..16221442 486..3232 100 <- Minus
X 16224349..16224832 1..485 99   Minus

GH27656.pep Sequence

Translation from 551 to 2257

> GH27656.pep
MEHIMNPFMSPAYLLGHGPHSHQHVHSHLPSHPQPNAASPASSPGGSSGS
GSGSAAGSGTGSGSSLKPRRWGSPPINLAGQFINPATGKKRVQCSICFKT
FCDKGALKIHFSAVHLREMHKCTVEGCNMVFSSRRSRNRHSANPNPKLHS
PHIRRKISPHDGRTAQQFPVFSPGTAAAAAAVAGRLPVAFPGLLPPPPPH
HGHHPYVMFGGQAGLHGLGLLSTGCQDPDSGSVDNEQDADPEDDNDFVYV
DMQANSSSPAASSEDQEEHERDNEQDEEMHCSLSLASSSSIAADEERAAD
QPLDFSLHKRRKSEQDREQEQEQEQEREREAEKEQEQDVESDKEHEPEQE
HELEREKRSPSDAFSMDQLLGKRKRHDSTASSSACSTAAASSASSSSASA
SANPPQTSIKMDLDPDSDSAYMTSRRQMLPLPVLDLEEHHHLRLLQTQMF
AAAAAAAATSQAPPTAFLPAGSPVDLAKDSPPMWSLLSEMYRSMLLKTQH
QQYNHHHQLQQQHQQEQHHHLTLSHHHQEQHHHLGHHHMGHHHHHHHQHH
QQQPQQQSPAATNAPISV*

GH27656.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:31:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17143-PA 523 GF17143-PA 1..523 1..568 1109 57.7 Plus
Dana\GF17175-PA 577 GF17175-PA 362..509 62..214 469 68.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:31:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19342-PA 635 GG19342-PA 63..635 1..568 2861 96 Plus
Dere\GG19344-PA 1341 GG19344-PA 450..580 69..201 465 71.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:31:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12158-PA 644 GH12158-PA 1..440 1..392 739 50.4 Plus
Dgri\GH12161-PA 1456 GH12161-PA 502..658 55..201 478 64.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
disco-PB 568 CG9908-PB 1..568 1..568 3050 100 Plus
disco-PA 568 CG9908-PA 1..568 1..568 3050 100 Plus
disco-r-PD 1311 CG32577-PD 432..855 43..517 602 34.4 Plus
disco-r-PC 1311 CG32577-PC 432..855 43..517 602 34.4 Plus
disco-r-PB 1311 CG32577-PB 432..855 43..517 602 34.4 Plus
disco-r-PA 1311 CG32577-PA 432..855 43..517 602 34.4 Plus
CG30389-PD 980 CG30389-PD 598..907 251..556 200 22.4 Plus
CG30389-PC 980 CG30389-PC 598..907 251..556 200 22.4 Plus
CG30389-PA 980 CG30389-PA 598..907 251..556 200 22.4 Plus
CG30389-PF 1009 CG30389-PF 598..907 251..556 200 22.4 Plus
CG30389-PE 1037 CG30389-PE 655..964 251..556 200 22.4 Plus
Camta-PE 1842 CG42332-PE 73..208 439..558 195 36 Plus
Camta-PD 1881 CG42332-PD 73..208 439..558 195 36 Plus
CG11122-PA 3539 CG11122-PA 2876..3060 380..565 182 28.9 Plus
sd-PQ 625 CG8544-PQ 196..304 451..557 168 41 Plus
cpo-PP 841 CG43738-PP 644..833 384..553 168 27.8 Plus
ct-PD 2165 CG11387-PD 343..739 222..561 168 22.5 Plus
sd-PQ 625 CG8544-PQ 161..301 423..557 166 36.2 Plus
SoxN-PB 761 CG18024-PB 368..745 200..541 166 22.2 Plus
CG31122-PA 642 CG31122-PA 499..635 392..557 165 30.1 Plus
srp-PB 1249 CG3992-PB 208..461 315..564 162 25.4 Plus
srp-PA 1264 CG3992-PA 208..461 315..564 162 25.4 Plus
Pdp1-PJ 633 CG17888-PJ 142..195 499..559 157 52.5 Plus
Pdp1-PD 647 CG17888-PD 142..195 499..559 157 52.5 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:31:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI10902-PA 623 GI10902-PA 1..446 1..420 785 53 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:31:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA22115-PA 565 GA22115-PA 1..514 1..498 854 50.7 Plus
Dpse\GA24985-PA 1375 GA24985-PA 520..659 69..213 469 69.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:31:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12971-PA 603 GM12971-PA 53..603 1..568 2797 94.8 Plus
Dsec\GM12974-PA 851 GM12974-PA 438..568 69..201 465 71.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:31:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18548-PA 599 GJ18548-PA 1..569 1..498 828 47 Plus
Dvir\GJ18554-PA 1353 GJ18554-PA 441..623 41..219 479 58.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:31:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25665-PA 596 GK25665-PA 1..565 1..498 923 53.5 Plus
Dwil\GK25666-PA 1324 GK25666-PA 479..610 69..204 457 70.8 Plus
Dwil\GK25666-PA 1324 GK25666-PA 401..609 28..201 411 52.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:32:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15986-PA 638 GE15986-PA 57..566 1..498 1731 92.9 Plus
Dyak\GE15991-PA 1269 GE15991-PA 398..533 64..201 469 71.2 Plus

GH27656.hyp Sequence

Translation from 551 to 2257

> GH27656.hyp
MEHIMNPFMSPAYLLGHGPHSHQHVHSHLPSHPQPNAASPASSPGGSSGS
GSGSAAGSGTGSGSSLKPRRWGSPPINLAGQFINPATGKKRVQCSICFKT
FCDKGALKIHFSAVHLREMHKCTVEGCNMVFSSRRSRNRHSANPNPKLHS
PHIRRKISPHDGRTAQQFPVFSPGTAAAAAAVAGRLPVAFPGLLPPPPPH
HGHHPYVMFGGQAGLHGLGLLSTGCQDPDSGSVDNEQDADPEDDNDFVYV
DMQANSSSPAASSEDQEEHERDNEQDEEMHCSLSLASSSSIAADEERAAD
QPLDFSLHKRRKSEQDREQEQEQEQEREREAEKEQEQDVESDKEHEPEQE
HELEREKRSPSDAFSMDQLLGKRKRHDSTASSSACSTAAASSASSSSASA
SANPPQTSIKMDLDPDSDSAYMTSRRQMLPLPVLDLEEHHHLRLLQTQMF
AAAAAAAATSQAPPTAFLPAGSPVDLAKDSPPMWSLLSEMYRSMLLKTQH
QQYNHHHQLQQQHQQEQHHHLTLSHHHQEQHHHLGHHHMGHHHHHHHQHH
QQQPQQQSPAATNAPISV*

GH27656.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:43:26
Subject Length Description Subject Range Query Range Score Percent Strand
disco-PB 568 CG9908-PB 1..568 1..568 3050 100 Plus
disco-PA 568 CG9908-PA 1..568 1..568 3050 100 Plus
disco-r-PD 1311 CG32577-PD 432..855 43..517 602 34.4 Plus
disco-r-PC 1311 CG32577-PC 432..855 43..517 602 34.4 Plus
disco-r-PB 1311 CG32577-PB 432..855 43..517 602 34.4 Plus