Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
GH27691.complete Sequence
2341 bp (2341 high quality bases) assembled on 2003-01-15
GenBank Submission: AY075352
> GH27691.complete
TGGTAGCGTCTGGTGTGGCGAGCCAACAAAAGGCTGGCAGAGCGGCCAAC
ACCGGACCCGGCCCGAAACTGAATCCGGGTCCGGGTCTGGGTCCGTGTCC
GTGTCCGGGTTGGTTTCGCAGCATCTACGGCATCACGGCTGCCAATTGAG
CGGAGTTTGGGTCTCAATTTGACGCGTAGCCAGCCAAGAAGAGTGGCCGG
CCAACAACAAAAACAGGTGACGCAGGATGTGGCCAACTGAGTAGGGAGAT
GGCGGAAGAGCAGGAGGCGCAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AAACGCAGCACACTTTTTTGGCCACGGTCCGCGTTTGATTAGCCAACTCA
AACATCAGGGCCAAGATCAGGGCAATTGACAGCTCTGCTCCCTCAGTTTC
TGCTTCCGCTTGGCACACAGTCACAGAGACACACATTGCCTTATGGCCAC
TGGACGATGGACCACAGTGGAGCCTGGGCAGTACGCAACACCTGACGCTG
CCCGCCAGGATACTCCCGTTCGTCTCGATCATACAGCAAATAAGAAACAT
TAAATAAACAATCAAAGAAACGGAGTATTGCTCCGCAACTGCCAACAACA
TTCAACGACAACCAGTTGCTCTGTGGTGCTAGAAAGTGAGTGTAAACAGT
GTGTGCCTTTGTGAACTGAACTGACCAACGTGCCAAGAACGAAGGGACGA
GGAGGTGGGCACTCTGGCTCGGACCCAAGCGATTTGGCAGGAGCTGATTG
TTTCATCTGGCCAGGCTTAATGAAATAACTCGTCCTGGCCGCGGCTCCAT
GTCAAACGCAGCAGGGCAATCGCCAGCGAAGCCCCAAAGGATAAGCATCG
TCCAGAACATCGGAATCTCCAGCGAAGGATGCACCAAAAACATTATCCAC
AGGACTAAGATGCCAAAGGAAACTTTCAAGATCCGTTTCCAAAACAAAAC
ATAAAATATATTCAATAAAAATGAAGTGGAAATGAAATGATACATAATAA
ATACCCTAATACATAACAGAAACAAAAGCAAGTCACTAAACTTGACTGCA
AATATAATACGATGACACTTAATAGAAACATTGTAATAAAATTGAAAAGA
AGTAGACAAGAATAACCACTCATAAAACTAAAATACCCAGCCTATAACTA
TTTTTCAAATAGTTGGCATAGTGCTTACTATGAACCATAATCGCATATGA
TATAACCAATATTGAGCACTTAATATAGCCCAATATTATATAGACCCAAA
TATGAAATAGTCACAAACAATAGTGCAATACAATACGTTTATAAAACAAC
GTCAAAAGTTTTATAACGAAAATATATTTCTTTATAATGAGCACTTTCGA
ACAACTACATTTAATATAAAATAGCGCGGGAAGTCTTCGGCGTGGTGAAA
GTATAAGGTGTAAGCACAGCTGAGAAGAAAGGAATTTACAAAATCGAAGG
AAGAAGTGAAAGAAGGAGTGAAAAAACATCTAAGCGCGGAAAAGTGCTAC
AAAATGAAGCTGACATCCTAAAGGAAACCTTGTTGGCCAATTGGGGAGGA
GGCCCAGAAGGTCGGGCCGATTTTCCGCTGCAACCGACGAAGGTCTGACC
AACCAATCGCAACGCACAGCGGCGACGAAGCCCGGCCGAATGGGAGCATC
TCGGGCAAACGGAGGGACAGTCAGCCGCCCTGCAATGCATTTCTTTTGGC
AACGAGTCAAGCGGCCTTTCACACACACACACACACACATTAGGATTCCA
TAAGGATACTCTGCCTCGCTCACATGCGCATCGAGTGGTATACGTAATAT
ATCAAGTATACGCCTGTTGGCCGGGCAGAAAGTCTGTGAGTGTGTGCGAA
TGGCCAAACAGAGTGTTGCCAACTGCATTGCCGGGCTGCCAACGACTCAA
CCCCCGACCCGAGGACACCACCCTCCTCCCGGCCAGGAGGCCAACGACGA
GTCCTTTTTGGAGGCAGCGCATTGGCTGCAGGACGACCGGCGACAGGACG
ACCAATCACCAATCAAATCGCGGCTTGTGCGCACTATCACGGCCGTACGA
AGGGCCAAAGGCACGGCATCCAGGACCTCAGCCGGAGACCCCAAGCCGAT
TGTCAATCTCTTAGACATATTATTATGCCAACGTCTCCTATATTATAGTT
CTCTAGTCGTAAGTCACATGCCCAAGCCATCGCCCCAGAACATCGGGGAC
ATGAAACATTAGTTTTATTGATAGAGTTCTTAGTTTCGAGCAGAAGCTAT
ACGATGATGATTTCAAGAATGAGAAAACGGAATAAAAACTGTAAAGCTTC
AGAGCGGAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
GH27691.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 18:25:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31781-RB | 2439 | CG31781-RB | 123..2437 | 1..2315 | 11575 | 100 | Plus |
CG31781-RC | 2533 | CG31781-RC | 1..1506 | 1..1506 | 7530 | 100 | Plus |
CG31781.c | 1573 | CG31781.c | 641..1573 | 1375..2310 | 4610 | 99.6 | Plus |
CG31781-RC | 2533 | CG31781-RC | 1729..2533 | 1506..2310 | 4025 | 100 | Plus |
CG31781.c | 1573 | CG31781.c | 6..640 | 1..635 | 3175 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 16:15:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 16868173..16869669 | 1..1506 | 7345 | 99.3 | Plus |
chr2L | 23010047 | chr2L | 16876157..16876961 | 1506..2310 | 3980 | 99.6 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:11:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 16:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16869492..16870997 | 1..1506 | 7530 | 100 | Plus |
2L | 23513712 | 2L | 16877496..16878305 | 1506..2315 | 4050 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16869492..16870997 | 1..1506 | 7530 | 100 | Plus |
2L | 23513712 | 2L | 16877496..16878305 | 1506..2315 | 4050 | 100 | Plus |
Blast to na_te.dros performed 2019-03-16 16:14:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 1832..1945 | 987..1101 | 122 | 57.4 | Plus |
GH27691.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 16:15:57 Download gff for
GH27691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 16868173..16869669 | 1..1506 | 96 | -> | Plus |
chr2L | 16876158..16876961 | 1507..2310 | 97 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:59:00 Download gff for
GH27691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31781-RB | 1..363 | 1850..2212 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:56:01 Download gff for
GH27691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31781-RC | 1..363 | 1850..2212 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:46:58 Download gff for
GH27691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31781-RB | 1..363 | 1850..2212 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:11:35 Download gff for
GH27691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31781-RB | 6..2315 | 1..2310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:56:01 Download gff for
GH27691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31781-RB | 6..2315 | 1..2310 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:46:58 Download gff for
GH27691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31781-RB | 6..2315 | 1..2310 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:15:57 Download gff for
GH27691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16869492..16870997 | 1..1506 | 100 | -> | Plus |
2L | 16877497..16878300 | 1507..2310 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:15:57 Download gff for
GH27691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16869492..16870997 | 1..1506 | 100 | -> | Plus |
2L | 16877497..16878300 | 1507..2310 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 16:15:57 Download gff for
GH27691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16869492..16870997 | 1..1506 | 100 | -> | Plus |
2L | 16877497..16878300 | 1507..2310 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:06:09 Download gff for
GH27691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16869492..16870997 | 1..1506 | 100 | -> | Plus |
arm_2L | 16877497..16878300 | 1507..2310 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:06:09 Download gff for
GH27691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16869492..16870997 | 1..1506 | 100 | -> | Plus |
arm_2L | 16877497..16878300 | 1507..2310 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:06:09 Download gff for
GH27691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16869492..16870997 | 1..1506 | 100 | -> | Plus |
arm_2L | 16877497..16878300 | 1507..2310 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:18:10 Download gff for
GH27691.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16869492..16870997 | 1..1506 | 100 | -> | Plus |
2L | 16877497..16878300 | 1507..2310 | 100 | | Plus |
GH27691.pep Sequence
Translation from 1849 to 2211
> GH27691.pep
MAKQSVANCIAGLPTTQPPTRGHHPPPGQEANDESFLEAAHWLQDDRRQD
DQSPIKSRLVRTITAVRRAKGTASRTSAGDPKPIVNLLDILLCQRLLYYS
SLVVSHMPKPSPQNIGDMKH*
GH27691.pep Blast Records
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 18:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD24090-PA | 116 | GD24090-PA | 1..116 | 5..120 | 583 | 94.8 | Plus |
GH27691.hyp Sequence
Translation from 1849 to 2211
> GH27691.hyp
MAKQSVANCIAGLPTTQPPTRGHHPPPGQEANDESFLEAAHWLQDDRRQD
DQSPIKSRLVRTITAVRRAKGTASRTSAGDPKPIVNLLDILLCQRLLYYS
SLVVSHMPKPSPQNIGDMKH*
Sequence GH27691.hyp has no blast hits.