Clone GH27756 Report

Search the DGRC for GH27756

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:277
Well:56
Vector:pOT2
Associated Gene/TranscriptCG4955-RA
Protein status:GH27756.pep: gold
Preliminary Size:1855
Sequenced Size:1822

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4955 2001-01-01 Release 2 assignment
CG4955 2001-07-04 Blastp of sequenced clone
CG4955 2003-01-01 Sim4 clustering to Release 3
CG4955 2008-04-29 Release 5.5 accounting
CG4955 2008-08-15 Release 5.9 accounting
CG4955 2008-12-18 5.12 accounting

Clone Sequence Records

GH27756.complete Sequence

1822 bp (1822 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051627

> GH27756.complete
TGTAGACCCAGAAATCGATAGTGTATACTTTAGACCTTTACAGCTTGCCA
CTTCTCCTCCAGTTGGACCAAGATCAGAATGGAGAGGCGAAGACCCCGAA
AGTCCTCGCGTAAATACGTGTGCTCCAAATCAAACTCTTCAGTTGGAGGA
GGAGTAGAGGAAGACAGTGGCTCATCATTGCCTGCCACCGCCAAAGCGTT
ACTCCTCCAGCCGGACGGTAATAAAGCACCAACCATGACATCCCTTCTGG
GCGAACGACTCAGAAGAGTTTCTCGCATCGCAAGAGCTCCGCACAGCCTA
CAAGTTACCGAAAATCCAGAAGAAGGTGGAGCACCAATCGTACCACTAAG
AGAATCCGGCGCATCGGAAGTGTCAGAAGTAAATCCGGGGGTTATGGTCA
TTCCGGAGTCGGCCAGTCCCCGGGGATCGGCGGTGCATGGACAACACGCT
AGCTTGGTCTTCAGTGCTGAAGCCAGGGATTCGGACAGTACGCGGATATC
GGAGGAAATGGTGGAAGTGTTCCAAACCTCTTCGGCGAGAACCACATCCA
ATGAGCCCGCAGGGGGCAATCTGCGCTTTGAAACCACTCCCGTGGCTGTA
AGCGAAAGTATGGTTGGCAATATAAACTTCTCCCCGAACGCCATCTACGA
TCAGAACAGGTATAGCAGCATGATGTCCAACGGGGATTACAATAATGGCA
ACAGGGGTGAGAGTGAGAGGAGCGTGGGAGCCTGCCACCATGGTTGGGCG
GCGCGACAACAACAAGTTGCCGCTGGACCTGCCGGCAGAGACACCCTGGG
ATTCGCCATCAGTCTGGGCGCCGCTAATTTGGGCCAGAACCGATGCAGTC
TGGGCGTTGCATGCGATGAGGACTGTGGCTATGGAACTGGCTGTGATTTT
GGATGCGGTCAGGCCCATGGCGTTGATCCCGGAAGCTTTCTAGGTCCGGG
AACCATGGGAACTGGTCCATTAATATTGACAACGGGATCAGGAGGCCCAC
CTGTACAGAGCGCCCTACGAGGAGCTCAAGGTGGCGGCTATAAGCAAGTT
GGCGCCGGGCAGCGGGGAACTTTTGGAACAGATTTCGGAAGTGAGCAGCT
TAACTTCTTCATTACCTTCCTATTGGAGGTCCTCGGTGTTTTAGTTTTTT
TTGCCATCTGCACGATAACATTTTGGATTACTCTGGGCTACCATGTTGTC
CAGTTGCTGGTGGACCTGAAGAACGCCGATCGCAACATTCAGGTGGCGGT
GGCCATTGTGTTCGGGCTGCTGCTCGTTGCGTTTGCCATATCGCAGGTGA
CCAACCTCAGTGGTTCCTGCTGTCATTCACGGGATCGAGCCCGTTCCAGA
ACCAAAGGTGGTGGCATTGGCTTCTTTCACAGATCCACCAAGCCAAAGAC
CAAGAGCTGTGCATCCAAAACCAAGACCTGTGCTCATAAGCCGAAGATTA
AGAAGGCAGCCACTTGTGGACCCAGCCTGGGCTTTCACACGCACCGCAAA
ACGAGGTATACGGATTGCGAGGGACGGGCAATTTTCTTGAGCTCGAGACG
ATATGCTATTCCGACTGAGATGAAACAACCACCCACCATTGTGCTCTGGA
TGCGCGACACACTGGTTCGCATGTTGCAGTAACCACCAACGAAGCCCCAC
GTTGGGCGCCAATAATACTTAAACTGACTTAAGACTGCGAAACTATACGT
ATTGCCTGGAAACACGAACCATTCGATCATTTGCAAAAATTTCAATTTGA
ATAAACTTTAAAAAAAAACTTTTGTAGGTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAA

GH27756.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4955-RA 1866 CG4955-RA 60..1839 1..1780 8870 99.8 Plus
CG4955.a 1726 CG4955.a 598..1723 655..1780 5600 99.8 Plus
CG4955.a 1726 CG4955.a 1..597 1..597 2985 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 12:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16971045..16972189 1..1145 5710 99.9 Plus
chrX 22417052 chrX 16972262..16972895 1146..1779 3140 99.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:11:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 12:37:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 17081506..17082650 1..1145 5725 100 Plus
X 23542271 X 17082723..17083357 1146..1780 3145 99.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 17089604..17090748 1..1145 5725 100 Plus
X 23527363 X 17090821..17091455 1146..1780 3145 99.6 Plus
Blast to na_te.dros performed on 2019-03-15 12:37:56 has no hits.

GH27756.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 12:38:45 Download gff for GH27756.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16971045..16972189 1..1145 99 -> Plus
chrX 16972262..16972895 1146..1779 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:59:08 Download gff for GH27756.complete
Subject Subject Range Query Range Percent Splice Strand
CG4955-RA 1..1554 79..1632 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:23:19 Download gff for GH27756.complete
Subject Subject Range Query Range Percent Splice Strand
CG4955-RA 1..1554 79..1632 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:47:56 Download gff for GH27756.complete
Subject Subject Range Query Range Percent Splice Strand
CG4955-RA 1..1554 79..1632 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:56:03 Download gff for GH27756.complete
Subject Subject Range Query Range Percent Splice Strand
CG4955-RA 1..1554 79..1632 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:06:47 Download gff for GH27756.complete
Subject Subject Range Query Range Percent Splice Strand
CG4955-RA 1..1554 79..1632 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:20:56 Download gff for GH27756.complete
Subject Subject Range Query Range Percent Splice Strand
CG4955-RA 1..1779 1..1779 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:23:19 Download gff for GH27756.complete
Subject Subject Range Query Range Percent Splice Strand
CG4955-RA 1..1779 1..1779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:47:56 Download gff for GH27756.complete
Subject Subject Range Query Range Percent Splice Strand
CG4955-RA 1..1779 1..1779 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:56:03 Download gff for GH27756.complete
Subject Subject Range Query Range Percent Splice Strand
CG4955-RA 1..1779 1..1779 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:06:47 Download gff for GH27756.complete
Subject Subject Range Query Range Percent Splice Strand
CG4955-RA 60..1838 1..1779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:38:45 Download gff for GH27756.complete
Subject Subject Range Query Range Percent Splice Strand
X 17081506..17082650 1..1145 100 -> Plus
X 17082723..17083356 1146..1779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:38:45 Download gff for GH27756.complete
Subject Subject Range Query Range Percent Splice Strand
X 17081506..17082650 1..1145 100 -> Plus
X 17082723..17083356 1146..1779 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 12:38:45 Download gff for GH27756.complete
Subject Subject Range Query Range Percent Splice Strand
X 17081506..17082650 1..1145 100 -> Plus
X 17082723..17083356 1146..1779 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:47:56 Download gff for GH27756.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16975539..16976683 1..1145 100 -> Plus
arm_X 16976756..16977389 1146..1779 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:33:48 Download gff for GH27756.complete
Subject Subject Range Query Range Percent Splice Strand
X 17089604..17090748 1..1145 100 -> Plus
X 17090821..17091454 1146..1779 99   Plus

GH27756.hyp Sequence

Translation from 78 to 1631

> GH27756.hyp
MERRRPRKSSRKYVCSKSNSSVGGGVEEDSGSSLPATAKALLLQPDGNKA
PTMTSLLGERLRRVSRIARAPHSLQVTENPEEGGAPIVPLRESGASEVSE
VNPGVMVIPESASPRGSAVHGQHASLVFSAEARDSDSTRISEEMVEVFQT
SSARTTSNEPAGGNLRFETTPVAVSESMVGNINFSPNAIYDQNRYSSMMS
NGDYNNGNRGESERSVGACHHGWAARQQQVAAGPAGRDTLGFAISLGAAN
LGQNRCSLGVACDEDCGYGTGCDFGCGQAHGVDPGSFLGPGTMGTGPLIL
TTGSGGPPVQSALRGAQGGGYKQVGAGQRGTFGTDFGSEQLNFFITFLLE
VLGVLVFFAICTITFWITLGYHVVQLLVDLKNADRNIQVAVAIVFGLLLV
AFAISQVTNLSGSCCHSRDRARSRTKGGGIGFFHRSTKPKTKSCASKTKT
CAHKPKIKKAATCGPSLGFHTHRKTRYTDCEGRAIFLSSRRYAIPTEMKQ
PPTIVLWMRDTLVRMLQ*

GH27756.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:44:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4955-PA 517 CG4955-PA 1..517 1..517 2695 100 Plus

GH27756.pep Sequence

Translation from 78 to 1631

> GH27756.pep
MERRRPRKSSRKYVCSKSNSSVGGGVEEDSGSSLPATAKALLLQPDGNKA
PTMTSLLGERLRRVSRIARAPHSLQVTENPEEGGAPIVPLRESGASEVSE
VNPGVMVIPESASPRGSAVHGQHASLVFSAEARDSDSTRISEEMVEVFQT
SSARTTSNEPAGGNLRFETTPVAVSESMVGNINFSPNAIYDQNRYSSMMS
NGDYNNGNRGESERSVGACHHGWAARQQQVAAGPAGRDTLGFAISLGAAN
LGQNRCSLGVACDEDCGYGTGCDFGCGQAHGVDPGSFLGPGTMGTGPLIL
TTGSGGPPVQSALRGAQGGGYKQVGAGQRGTFGTDFGSEQLNFFITFLLE
VLGVLVFFAICTITFWITLGYHVVQLLVDLKNADRNIQVAVAIVFGLLLV
AFAISQVTNLSGSCCHSRDRARSRTKGGGIGFFHRSTKPKTKSCASKTKT
CAHKPKIKKAATCGPSLGFHTHRKTRYTDCEGRAIFLSSRRYAIPTEMKQ
PPTIVLWMRDTLVRMLQ*

GH27756.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21741-PA 455 GF21741-PA 263..455 336..517 599 63.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:02:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19095-PA 513 GG19095-PA 1..513 1..517 2123 80.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17622-PA 284 GH17622-PA 111..281 338..516 315 40.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4955-PA 517 CG4955-PA 1..517 1..517 2695 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14797-PA 409 GI14797-PA 221..402 338..512 382 45.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18276-PA 459 GL18276-PA 236..457 336..516 387 38.6 Plus
Dper\GL15823-PA 515 GL15823-PA 285..513 336..516 357 33.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18552-PA 442 GA18552-PA 223..440 336..516 400 39.9 Plus
Dpse\GA26092-PA 515 GA26092-PA 285..513 336..516 347 33.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13483-PA 509 GM13483-PA 1..509 1..517 2239 85 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:02:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17326-PA 491 GD17326-PA 1..490 1..494 2251 89.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:02:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19462-PA 317 GJ19462-PA 46..310 236..512 451 39.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15481-PA 505 GK15481-PA 196..504 236..517 527 40.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17641-PA 509 GE17641-PA 1..509 1..517 1940 75.9 Plus