Clone GH27792 Report

Search the DGRC for GH27792

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:277
Well:92
Vector:pOT2
Associated Gene/TranscriptCG2865-RA
Protein status:GH27792.pep: gold
Preliminary Size:1535
Sequenced Size:1452

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2865 2001-09-19 Blastp of sequenced clone
CG2865 2003-01-01 Sim4 clustering to Release 3
CG2865 2008-04-29 Release 5.5 accounting
CG2865 2008-08-15 Release 5.9 accounting
CG2865 2008-12-18 5.12 accounting

Clone Sequence Records

GH27792.complete Sequence

1452 bp (1452 high quality bases) assembled on 2001-09-19

GenBank Submission: AY058474

> GH27792.complete
AGAAAACCACATAAACAAGCCAGCAAACAAGGCACACACTTGCTTGAAAA
ACGCACAATGACCTTGCCCACAAACACACACGCATCTGCAAACGACGGCG
GCAGCGGCAACAACAACCACAGCAATATCAGCAGTAACAACAGCAGCAGC
AGCGACGAAGACTCAGACATGTTTGGACCACCCCGCTGCTCCCCGCCCAT
CGGCTATCACCATCACCGTTCCCGTGTGCCCATGATCTCGCCAAAGCTGC
GGCAGCGCGAGGAGCGCAAGCGGATCCTCCAGCTCTGCGCCCACAAGATG
GAGAGGATCAAGGACTCGGAGGCGAACCTGCGGCGCAGCGTCTGCATCAA
CAACACCTACTGCCGCCTGAATGACGAACTGCGGCGCGAGAAGCAGATGC
GCTACCTCCAGAATCTGCCCAGAACCAGCGACAGCGGCGCAAGCACCGAA
CTGGCGCGTGAGAATCTCTTCCAGCCGAACATGGACGACGCCAAGCCGGC
CGGCAATAGCACTAGCAATAATATCAACGCCAACGGCAAGCCTTCATCCT
CTTTTGGCGATGCCTTTGGCTCCTCAAACGGATCATCGTCGGGTCGCGGC
GGAATTTGCTCCCTGGAGAATCAACCGCCCGAGCGTCAGCAGTTGGGGAC
GCCCGCTGGTGCCTCCGCTCCCGAGGCGGCCAATTCGGCGCCCCTTTCCG
TTTCGGGCTCGGCATCGGAACGCGTGAATAACCGAAAACGCCACCTGTCC
AGCTGCAACTTGGTCAACGATCTGGAAATACTGGACAGGGAGCTGAGCGC
CATCAATGCACCCATGCTGCTAATCGATCCAGAGATTACCCAAGGAGCCG
AACAGCTGGAGAAGGCCGCCTTGTCCGCCAGCAGGAAGAGATTGAGGAGC
AATAGCGGCAGCGAGGACGAAAGTGATCGCCTGGTGCGCGAGGCTCTGTC
CCAGTTCTACATACCGCCACAGCGCCTCATCTCCGCCATTGAGGAGTGTC
CCCTGGATGTGGTTGGCTTGGGTATGGGAATGAATGTGAATGTGAATGTG
GGAGGAATTAGTGGAATCGGTGGCATCGGAGGAGCTGCAGGCGCTGGCGT
CGAAATGCCCGGAGGCAAACGGATGAAGCTGAATGACCATCACCATCTCA
ATCACCATCACCATTTGCACCATCATCTGGAGCTGGTCGATTTCGACATG
AACCAAAACCAAAAGGATTTCGAGGTGATCATGGACGCCTTGAGGCTGGG
AACGGCGACACCGCCGAGCGGCGCCAGCAGCGATTCTTGCGGACAGGCGG
CGATGATGAGCGAGTCGGCCAGCGTGTTCCACAATCTGGTGGTCACCTCG
TTGGAGACATGAAAGTACCAGTGAATCCCCGAGCAGCAGACAAAGATTAA
AATGTTTAGATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AA

GH27792.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG2865.e 3202 CG2865.e 708..2122 1..1415 7075 100 Plus
CG2865.f 5311 CG2865.f 708..2122 1..1415 7075 100 Plus
CG2865.p 3124 CG2865.p 708..2122 1..1415 7075 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 10:22:16
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 2175473..2176467 1414..420 4960 99.9 Minus
chrX 22417052 chrX 2186280..2186701 422..1 2110 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:11:21 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 10:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2281525..2282520 1415..420 4980 100 Minus
X 23542271 X 2292325..2292746 422..1 2110 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 2289623..2290618 1415..420 4980 100 Minus
X 23527363 X 2300423..2300844 422..1 2110 100 Minus
Blast to na_te.dros performed 2019-03-16 10:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6713..6860 8..156 210 64.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2337..2430 68..162 202 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6809 69..153 199 74.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2302..2382 78..156 193 72.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2424..2527 68..169 191 66.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6726..6788 91..153 189 77.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6811..6887 82..156 182 72.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2305..2358 100..153 180 81.5 Plus
roo 9092 roo DM_ROO 9092bp 1077..1139 91..153 180 76.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2397..2475 83..162 172 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2698..2832 14..150 166 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..6821 68..153 164 68.1 Plus
roo 9092 roo DM_ROO 9092bp 1096..1168 101..172 164 71.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1482..1571 73..158 162 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1501..1587 61..150 162 68.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2788..2856 91..156 158 72.5 Plus
roo 9092 roo DM_ROO 9092bp 1040..1126 71..158 158 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2382..2439 99..156 155 74.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2602..2666 91..158 153 72.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6767 108..153 149 80.4 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 972..1040 108..177 149 70 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2789..2856 82..150 144 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2733..2823 69..156 141 64.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6839..6920 71..156 141 66.3 Plus
TART-A 13424 TART-A 13424bp 911..1003 127..223 141 64.9 Plus
TART-A 13424 TART-A 13424bp 12089..12181 127..223 141 64.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2581..2648 93..158 137 71 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3239..3369 92..215 134 59.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2346 122..162 124 78 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2897..2938 107..148 120 76.2 Plus
roo 9092 roo DM_ROO 9092bp 1061..1093 120..152 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6746 125..153 118 89.7 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 122..199 83..155 116 66.7 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9152..9229 83..155 116 66.7 Plus
Doc3-element 4740 Doc3-element DOC3 4740bp 530..615 107..192 114 62.1 Plus

GH27792.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 10:23:16 Download gff for GH27792.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 2186280..2186548 154..422 100 == Minus
chrX 2186612..2186701 1..90 100   Minus
chrX 2175473..2176464 423..1414 95 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:01:25 Download gff for GH27792.complete
Subject Subject Range Query Range Percent Splice Strand
CG2865-RA 1..1305 58..1362 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:04:40 Download gff for GH27792.complete
Subject Subject Range Query Range Percent Splice Strand
CG2865-RA 1..1305 58..1362 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 10:00:27 Download gff for GH27792.complete
Subject Subject Range Query Range Percent Splice Strand
CG2865-RA 1..1305 58..1362 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:35:19 Download gff for GH27792.complete
Subject Subject Range Query Range Percent Splice Strand
CG2865-RA 1..1305 58..1362 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:08 Download gff for GH27792.complete
Subject Subject Range Query Range Percent Splice Strand
CG2865-RA 1..1305 58..1362 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:01:24 Download gff for GH27792.complete
Subject Subject Range Query Range Percent Splice Strand
CG2865-RA 1..1414 1..1414 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:04:40 Download gff for GH27792.complete
Subject Subject Range Query Range Percent Splice Strand
CG2865-RA 1..1414 1..1414 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:27 Download gff for GH27792.complete
Subject Subject Range Query Range Percent Splice Strand
CG2865-RA 666..2079 1..1414 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:35:19 Download gff for GH27792.complete
Subject Subject Range Query Range Percent Splice Strand
CG2865-RA 1..1414 1..1414 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:08 Download gff for GH27792.complete
Subject Subject Range Query Range Percent Splice Strand
CG2865-RA 666..2079 1..1414 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:23:16 Download gff for GH27792.complete
Subject Subject Range Query Range Percent Splice Strand
X 2281526..2282517 423..1414 100 <- Minus
X 2292325..2292746 1..422 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:23:16 Download gff for GH27792.complete
Subject Subject Range Query Range Percent Splice Strand
X 2281526..2282517 423..1414 100 <- Minus
X 2292325..2292746 1..422 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 10:23:16 Download gff for GH27792.complete
Subject Subject Range Query Range Percent Splice Strand
X 2281526..2282517 423..1414 100 <- Minus
X 2292325..2292746 1..422 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:27 Download gff for GH27792.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2175559..2176550 423..1414 100 <- Minus
arm_X 2186358..2186779 1..422 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:12:17 Download gff for GH27792.complete
Subject Subject Range Query Range Percent Splice Strand
X 2289624..2290615 423..1414 100 <- Minus
X 2300423..2300844 1..422 100   Minus

GH27792.hyp Sequence

Translation from 0 to 1361

> GH27792.hyp
RKPHKQASKQGTHLLEKRTMTLPTNTHASANDGGSGNNNHSNISSNNSSS
SDEDSDMFGPPRCSPPIGYHHHRSRVPMISPKLRQREERKRILQLCAHKM
ERIKDSEANLRRSVCINNTYCRLNDELRREKQMRYLQNLPRTSDSGASTE
LARENLFQPNMDDAKPAGNSTSNNINANGKPSSSFGDAFGSSNGSSSGRG
GICSLENQPPERQQLGTPAGASAPEAANSAPLSVSGSASERVNNRKRHLS
SCNLVNDLEILDRELSAINAPMLLIDPEITQGAEQLEKAALSASRKRLRS
NSGSEDESDRLVREALSQFYIPPQRLISAIEECPLDVVGLGMGMNVNVNV
GGISGIGGIGGAAGAGVEMPGGKRMKLNDHHHLNHHHHLHHHLELVDFDM
NQNQKDFEVIMDALRLGTATPPSGASSDSCGQAAMMSESASVFHNLVVTS
LET*

GH27792.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG2865-PB 434 CG2865-PB 1..434 20..453 2252 100 Plus
CG2865-PA 434 CG2865-PA 1..434 20..453 2252 100 Plus

GH27792.pep Sequence

Translation from 57 to 1361

> GH27792.pep
MTLPTNTHASANDGGSGNNNHSNISSNNSSSSDEDSDMFGPPRCSPPIGY
HHHRSRVPMISPKLRQREERKRILQLCAHKMERIKDSEANLRRSVCINNT
YCRLNDELRREKQMRYLQNLPRTSDSGASTELARENLFQPNMDDAKPAGN
STSNNINANGKPSSSFGDAFGSSNGSSSGRGGICSLENQPPERQQLGTPA
GASAPEAANSAPLSVSGSASERVNNRKRHLSSCNLVNDLEILDRELSAIN
APMLLIDPEITQGAEQLEKAALSASRKRLRSNSGSEDESDRLVREALSQF
YIPPQRLISAIEECPLDVVGLGMGMNVNVNVGGISGIGGIGGAAGAGVEM
PGGKRMKLNDHHHLNHHHHLHHHLELVDFDMNQNQKDFEVIMDALRLGTA
TPPSGASSDSCGQAAMMSESASVFHNLVVTSLET*

GH27792.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21960-PA 118 GF21960-PA 1..116 1..122 485 82.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG12624-PA 450 GG12624-PA 1..450 1..434 1751 89.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24251-PA 416 GH24251-PA 22..416 33..434 1128 63.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:23:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG2865-PB 434 CG2865-PB 1..434 1..434 2252 100 Plus
CG2865-PA 434 CG2865-PA 1..434 1..434 2252 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21445-PA 435 GI21445-PA 1..435 1..434 1230 63.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:50:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13382-PA 440 GL13382-PA 1..440 1..434 1242 62.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15493-PA 443 GA15493-PA 1..443 1..434 1235 61.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:50:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18890-PA 122 GM18890-PA 1..122 1..122 650 98.4 Plus
Dsec\GM18891-PA 108 GM18891-PA 1..108 327..434 557 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16372-PA 430 GD16372-PA 1..430 1..434 1475 70.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:50:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16466-PA 406 GJ16466-PA 1..406 1..434 1267 63.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:50:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10297-PA 532 GK10297-PA 287..532 226..434 606 62.5 Plus
Dwil\GK10297-PA 532 GK10297-PA 1..143 1..147 559 76.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16954-PA 439 GE16954-PA 1..439 1..434 1763 91.4 Plus