Clone GH27858 Report

Search the DGRC for GH27858

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:278
Well:58
Vector:pOT2
Associated Gene/TranscriptCG3345-RA
Protein status:GH27858.pep: gold
Preliminary Size:2311
Sequenced Size:2411

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3345 2001-01-01 Release 2 assignment
CG3345 2001-11-09 Blastp of sequenced clone
CG3345 2003-01-01 Sim4 clustering to Release 3
CG3345 2008-04-29 Release 5.5 accounting
CG3345 2008-08-15 Release 5.9 accounting
CG3345 2008-12-18 5.12 accounting

Clone Sequence Records

GH27858.complete Sequence

2411 bp (2411 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069231

> GH27858.complete
TTAAGCACAAATAATTTAGGCTACTGTAAGTTTAGAGCGACAAGATGATC
GATATTTTGTCGCTGCCGCGGCGAAATAAGGTGTCCGGAAACCCGGCCCT
GCTAAAGATGATCTCCTACAAGACTGGACTACCCATCAACAGTCTACCCG
GATGGGAGCTGATCCCTCTTAATTGCAAGCTGCCAATGCTCAAATGTCCC
GGCAATCAGGTCATATTCTCCAAGAACAAGATCGGACAGGACTTCAAGAG
CGGTAAACAGGAGTTTGAGTGTTCCGTTACCGAACACATCCCGGAGTACA
ATCCGCTACACGACTCCAACCTAAAGACGTTCTACTCCAATGAGCGTAAT
CTGAAGCGGTTGAGGGAAAACGGTGAGATAACGCAGGACAACGATGTAAT
ATGCAATCTGAAGGACTTCAATCAGCATCGCCAGGAGCTGCACAAATCGC
AGTTGTACTACATTTTGCAGGCATACAAGCGGCGCGAGTCGGAGCAATAT
GATCGAATGCTGATCGCCAACGCGGAGTCCATCACAAAAAAGGATCACCA
GAATCTCGCAGCCCGTCACCAGTGCACTGAGGAGGTTCTTGCCAGAAAGA
AACTACAGGAGCAGGAACGCCACGAAAGAAAGGTCCATCTGCTGAATATC
ACATATGAGAAGTTTAAGCGCTTAGAGAACCTGGCCACCATGCAGAATAT
GTTGCTGGAGCACCGCAAGATGCTGACAAACATGCGTGTAGCTGCCCACA
TAAGCATGTGCCAGGATTTGATGAGAAAGCTATTGATCAAACAGAAGAAG
CTCTTCCAGTTCAAAAAGGATCGGTTCAACAAAAACATGCGAATCCTGAG
GAAACAACGGCTGGTAAAGAACACTGAGCACCAGATTCAGTCGTGGAGGA
AGCGACTTGATGAGCGAATTGCTAATCAGCGTAGGATCGAATACCTCCTG
CAGGAGGTGGAAAAAGAGCGAGAGGCGTTTATAGACAGGCACAAGGCTCA
TTACAGAGAAAAGTGGCAACGGATTCAGGACGAGATTAAGGAAAGAGCTC
AAAAGGCCATCACTGCTCGTCAGCCCAAAAGAAAGCGCCGCAAGAAGAAG
AAGTCGACACTTCAGGAACGCAAGCCATCATTCTGCGATGAGTATCAGGC
CACCTTTGAGGGATTGTTAGACAGTGATCTTTGTTACGCCTTGAATGCAG
CCATTGCCATGGAGGGTCAGACCGCTCTCAGCTTCGCACCAGACGACCCC
ATCTATAAGGCGGCACAATATATACTGGACTACATAATTTCTGGTTTAAA
CGACGATCTCAGCGAGGATGAGTGTGCCTTGCAGGTGCTGATCTCGCGCA
TTAAGGATTTTGTCTGCGATGCAAAGAAATATGTGCACTACAAAGCTTAT
CAGATCATTGGATTCGCCAGAGACCACAAAGCCATGGAAGTGCCTCCGTC
GATGGCCAAACAGCCGAAAAACCACTCGCGCGCCTCCCATGTATCATTTA
GCGGTGTAGCCAGCACCATTGGCGTGGGCAGCTACGAGATTCATCCGTTC
GTGGACGTCCGCCCGTGCAGCGAACGTCGGGCCACTCCGGCGGGATCATT
AGCCTCTCTGGTTGTCAGCCAGATCGGCGAACAGGTAATACAGGACAAGG
TGCGCCTGCCGCATCTAAATCGCAACCAGATCGTGTTCATAGAGCACTAC
CTGGTGAAGTTTAAGCGGGATCTATTGGTGGGTCTGGACAAGCTGGTATT
TGCAGCGATTCAGTGCCACTTTGAAAACCGTATGATGGAGGTACGAGAGG
AGCTCCTTCTGCTTGACAGGAACTATTTGTTCGAGCAGATTGCCAGGGGT
ATCCTCAGCTATGCGGTTAATCCGCTCAACTATCAGTCGGTGCTTAAGCT
GGCCGTGAGCGTCCAGTCGTGTGAAATCATCTGGGAGCTGCAGCAGACGA
TGCTCAAGCCAGGCATCGATCCCCGGGGCCAGAATCACCCAGTGTCCTGC
GGCACCGAGCAGGAACGCGAGACCCTGGCTCTCTGCATACCCTAGGATCC
TGTCAAGCAGACAGGGCAAGGAAAATTGATCTTAAAGCAGGATGCCTTAG
CTCTGGCGGGAAGTAGCCCTAAAAATTACTTGTATATTTCGTTTCCGAGG
CACTTACATACTTCAGAGTCCAGGAATATTCATTTTCAATATGATGTCCT
AAATTTATGTACTATGTTTTCTTTTATCGTTTAAAATGCTTCCTTATAAA
TAAGTTGAGTATAACTTTAAAAATCAGACACCTGGATCCTTTAGTTAAAA
ACTCAAAGCTCTTGAGATTTAATCGTAGAAAACCAATAAATTTAGGTAAA
TACACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

GH27858.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3345-RA 2562 CG3345-RA 206..2562 1..2357 11785 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 18:03:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 269491..270639 243..1391 5730 99.9 Plus
chr2L 23010047 chr2L 270694..271659 1392..2357 4830 100 Plus
chr2L 23010047 chr2L 269181..269422 1..242 1195 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:11:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 18:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 269458..270606 243..1391 5745 100 Plus
2L 23513712 2L 270661..271627 1392..2358 4835 100 Plus
2L 23513712 2L 269148..269389 1..242 1210 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:25:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 269458..270606 243..1391 5745 100 Plus
2L 23513712 2L 270661..271627 1392..2358 4835 100 Plus
2L 23513712 2L 269148..269389 1..242 1210 100 Plus
Blast to na_te.dros performed on 2019-03-16 18:03:08 has no hits.

GH27858.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 18:04:19 Download gff for GH27858.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 269181..269422 1..242 99 -> Plus
chr2L 269491..270639 243..1391 99 -> Plus
chr2L 270694..271659 1392..2357 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:59:16 Download gff for GH27858.complete
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 1..2001 45..2045 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:33:11 Download gff for GH27858.complete
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 1..2001 45..2045 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:08:00 Download gff for GH27858.complete
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 1..2001 45..2045 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:48 Download gff for GH27858.complete
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 1..2001 45..2045 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:28:17 Download gff for GH27858.complete
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 1..2001 45..2045 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:12:11 Download gff for GH27858.complete
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 61..2417 1..2357 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:33:11 Download gff for GH27858.complete
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 61..2417 1..2357 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:08:00 Download gff for GH27858.complete
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 61..2417 1..2357 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:48 Download gff for GH27858.complete
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 61..2417 1..2357 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:28:17 Download gff for GH27858.complete
Subject Subject Range Query Range Percent Splice Strand
CG3345-RA 61..2417 1..2357 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:04:19 Download gff for GH27858.complete
Subject Subject Range Query Range Percent Splice Strand
2L 269148..269389 1..242 100 -> Plus
2L 269458..270606 243..1391 100 -> Plus
2L 270661..271626 1392..2357 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:04:19 Download gff for GH27858.complete
Subject Subject Range Query Range Percent Splice Strand
2L 269148..269389 1..242 100 -> Plus
2L 269458..270606 243..1391 100 -> Plus
2L 270661..271626 1392..2357 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 18:04:19 Download gff for GH27858.complete
Subject Subject Range Query Range Percent Splice Strand
2L 269148..269389 1..242 100 -> Plus
2L 269458..270606 243..1391 100 -> Plus
2L 270661..271626 1392..2357 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:08:00 Download gff for GH27858.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 269148..269389 1..242 100 -> Plus
arm_2L 269458..270606 243..1391 100 -> Plus
arm_2L 270661..271626 1392..2357 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:37:33 Download gff for GH27858.complete
Subject Subject Range Query Range Percent Splice Strand
2L 269148..269389 1..242 100 -> Plus
2L 269458..270606 243..1391 100 -> Plus
2L 270661..271626 1392..2357 100   Plus

GH27858.pep Sequence

Translation from 44 to 2044

> GH27858.pep
MIDILSLPRRNKVSGNPALLKMISYKTGLPINSLPGWELIPLNCKLPMLK
CPGNQVIFSKNKIGQDFKSGKQEFECSVTEHIPEYNPLHDSNLKTFYSNE
RNLKRLRENGEITQDNDVICNLKDFNQHRQELHKSQLYYILQAYKRRESE
QYDRMLIANAESITKKDHQNLAARHQCTEEVLARKKLQEQERHERKVHLL
NITYEKFKRLENLATMQNMLLEHRKMLTNMRVAAHISMCQDLMRKLLIKQ
KKLFQFKKDRFNKNMRILRKQRLVKNTEHQIQSWRKRLDERIANQRRIEY
LLQEVEKEREAFIDRHKAHYREKWQRIQDEIKERAQKAITARQPKRKRRK
KKKSTLQERKPSFCDEYQATFEGLLDSDLCYALNAAIAMEGQTALSFAPD
DPIYKAAQYILDYIISGLNDDLSEDECALQVLISRIKDFVCDAKKYVHYK
AYQIIGFARDHKAMEVPPSMAKQPKNHSRASHVSFSGVASTIGVGSYEIH
PFVDVRPCSERRATPAGSLASLVVSQIGEQVIQDKVRLPHLNRNQIVFIE
HYLVKFKRDLLVGLDKLVFAAIQCHFENRMMEVREELLLLDRNYLFEQIA
RGILSYAVNPLNYQSVLKLAVSVQSCEIIWELQQTMLKPGIDPRGQNHPV
SCGTEQERETLALCIP*

GH27858.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21754-PA 672 GF21754-PA 1..672 1..666 3075 87.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24706-PA 667 GG24706-PA 1..667 1..666 3528 98.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11544-PA 668 GH11544-PA 1..666 1..664 2446 70.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3345-PA 666 CG3345-PA 1..666 1..666 3456 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17033-PA 676 GI17033-PA 1..674 1..664 2431 69.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:24:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25917-PA 227 GL25917-PA 8..225 450..664 912 78.4 Plus
Dper\GL15774-PA 184 GL15774-PA 1..152 45..195 668 82.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17393-PA 666 GA17393-PA 1..664 1..664 2692 76.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16727-PA 640 GM16727-PA 1..640 1..666 3412 96.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:24:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23011-PA 666 GD23011-PA 1..666 1..666 3496 97 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ24645-PA 668 GJ24645-PA 1..666 1..664 2524 73.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21096-PA 667 GK21096-PA 1..666 1..665 2823 82.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:24:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16681-PA 667 GE16681-PA 1..667 1..666 3502 97.8 Plus

GH27858.hyp Sequence

Translation from 44 to 2044

> GH27858.hyp
MIDILSLPRRNKVSGNPALLKMISYKTGLPINSLPGWELIPLNCKLPMLK
CPGNQVIFSKNKIGQDFKSGKQEFECSVTEHIPEYNPLHDSNLKTFYSNE
RNLKRLRENGEITQDNDVICNLKDFNQHRQELHKSQLYYILQAYKRRESE
QYDRMLIANAESITKKDHQNLAARHQCTEEVLARKKLQEQERHERKVHLL
NITYEKFKRLENLATMQNMLLEHRKMLTNMRVAAHISMCQDLMRKLLIKQ
KKLFQFKKDRFNKNMRILRKQRLVKNTEHQIQSWRKRLDERIANQRRIEY
LLQEVEKEREAFIDRHKAHYREKWQRIQDEIKERAQKAITARQPKRKRRK
KKKSTLQERKPSFCDEYQATFEGLLDSDLCYALNAAIAMEGQTALSFAPD
DPIYKAAQYILDYIISGLNDDLSEDECALQVLISRIKDFVCDAKKYVHYK
AYQIIGFARDHKAMEVPPSMAKQPKNHSRASHVSFSGVASTIGVGSYEIH
PFVDVRPCSERRATPAGSLASLVVSQIGEQVIQDKVRLPHLNRNQIVFIE
HYLVKFKRDLLVGLDKLVFAAIQCHFENRMMEVREELLLLDRNYLFEQIA
RGILSYAVNPLNYQSVLKLAVSVQSCEIIWELQQTMLKPGIDPRGQNHPV
SCGTEQERETLALCIP*

GH27858.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:45:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3345-PA 666 CG3345-PA 1..666 1..666 3456 100 Plus