BDGP Sequence Production Resources |
Search the DGRC for GH28004
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 280 |
Well: | 4 |
Vector: | pOT2 |
Associated Gene/Transcript | Capa-RA |
Protein status: | GH28004.pep: gold |
Preliminary Size: | 895 |
Sequenced Size: | 728 |
Gene | Date | Evidence |
---|---|---|
CG15520 | 2001-01-01 | Release 2 assignment |
CG15520 | 2001-11-29 | Blastp of sequenced clone |
CG15520 | 2003-01-01 | Sim4 clustering to Release 3 |
capa | 2008-04-29 | Release 5.5 accounting |
capa | 2008-08-15 | Release 5.9 accounting |
capa | 2008-12-18 | 5.12 accounting |
728 bp (728 high quality bases) assembled on 2001-11-29
GenBank Submission: AY069234
> GH28004.complete TTCCGAGGATAACATCAGACCGAAAAACATATTCGCCAAGCCAGTGTTTC GTCCTAAATAGTCTTGCAAATATGAAATCTATGTTGGTCCACATAGTTCT AGTGATTTTCATAATCGCCGAATTCAGTACAGCTGAGACGGACCACGACA AGAACCGACGAGGTGCCAACATGGGGCTCTATGCCTTCCCGCGCGTTGGT CGCAGCGATCCCAGTCTGGCCAACAGTCTGCGCGACGGATTAGAGGCCGG AGTCCTCGACGGCATTTACGGAGATGCCTCCCAGGAGGATTACAATGAGG CTGATTTCCAAAAGAAAGCCAGTGGTCTGGTGGCCTTCCCACGCGTTGGC CGCGGTGACGCCGAGCTGAGGAAGTGGGCCCACCTTCTGGCTCTGCAACA GGTGCTGGACAAGCGCACGGGACCCAGCGCCTCCTCGGGATTGTGGTTCG GTCCCCGGCTGGGAAAGCGCAGTGTGGACGCCAAGTCGTTTGCGGACATC TCCAAGGGACAGAAGGAACTCAACTAGACACACTGACTCCCCCTTTTGAC ACTCTGAATGTCGTAGATACTTTTGTATATCAAAGAGAACGCTTCTAATT GAATATTGTAACGGGTATACAGCAAATATGTTTTTCGGTCAAATATATAT TATGAATAAGGGCTGGTGAGAGCTTGTAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
capa-RA | 778 | capa-RA | 38..716 | 1..679 | 3395 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 25735411..25735791 | 677..297 | 1845 | 99 | Minus |
chr3R | 27901430 | chr3R | 25735861..25736023 | 297..135 | 815 | 100 | Minus |
chr3R | 27901430 | chr3R | 25736614..25736748 | 135..1 | 675 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 29912989..29913371 | 679..297 | 1915 | 100 | Minus |
3R | 32079331 | 3R | 29913441..29913603 | 297..135 | 815 | 100 | Minus |
3R | 32079331 | 3R | 29914194..29914328 | 135..1 | 675 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 29653820..29654202 | 679..297 | 1915 | 100 | Minus |
3R | 31820162 | 3R | 29654272..29654434 | 297..135 | 815 | 100 | Minus |
3R | 31820162 | 3R | 29655025..29655159 | 135..1 | 675 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 25735411..25735790 | 298..677 | 98 | <- | Minus |
chr3R | 25735861..25736022 | 136..297 | 100 | <- | Minus |
chr3R | 25736614..25736748 | 1..135 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
capa-RA | 1..456 | 72..527 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
capa-RA | 1..456 | 72..527 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
capa-RA | 1..456 | 72..527 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
capa-RA | 1..456 | 72..527 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Capa-RA | 1..456 | 72..527 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
capa-RA | 1..677 | 1..677 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
capa-RA | 1..677 | 1..677 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
capa-RA | 19..695 | 1..677 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
capa-RA | 1..677 | 1..677 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Capa-RA | 19..695 | 1..677 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29912991..29913370 | 298..677 | 100 | <- | Minus |
3R | 29913441..29913602 | 136..297 | 100 | <- | Minus |
3R | 29914194..29914328 | 1..135 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29912991..29913370 | 298..677 | 100 | <- | Minus |
3R | 29913441..29913602 | 136..297 | 100 | <- | Minus |
3R | 29914194..29914328 | 1..135 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29912991..29913370 | 298..677 | 100 | <- | Minus |
3R | 29913441..29913602 | 136..297 | 100 | <- | Minus |
3R | 29914194..29914328 | 1..135 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 25738713..25739092 | 298..677 | 100 | <- | Minus |
arm_3R | 25739163..25739324 | 136..297 | 100 | <- | Minus |
arm_3R | 25739916..25740050 | 1..135 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 29653822..29654201 | 298..677 | 100 | <- | Minus |
3R | 29654272..29654433 | 136..297 | 100 | <- | Minus |
3R | 29655025..29655159 | 1..135 | 100 | Minus |
Translation from 2 to 526
> GH28004.hyp PRITSDRKTYSPSQCFVLNSLANMKSMLVHIVLVIFIIAEFSTAETDHDK NRRGANMGLYAFPRVGRSDPSLANSLRDGLEAGVLDGIYGDASQEDYNEA DFQKKASGLVAFPRVGRGDAELRKWAHLLALQQVLDKRTGPSASSGLWFG PRLGKRSVDAKSFADISKGQKELN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Capa-PA | 151 | CG15520-PA | 1..151 | 24..174 | 771 | 100 | Plus |
Translation from 71 to 526
> GH28004.pep MKSMLVHIVLVIFIIAEFSTAETDHDKNRRGANMGLYAFPRVGRSDPSLA NSLRDGLEAGVLDGIYGDASQEDYNEADFQKKASGLVAFPRVGRGDAELR KWAHLLALQQVLDKRTGPSASSGLWFGPRLGKRSVDAKSFADISKGQKEL N*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16224-PA | 153 | GF16224-PA | 8..153 | 3..151 | 630 | 81.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11989-PA | 151 | GG11989-PA | 1..151 | 1..151 | 761 | 96 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16817-PA | 158 | GH16817-PA | 1..157 | 1..150 | 466 | 60.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Capa-PA | 151 | CG15520-PA | 1..151 | 1..151 | 771 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI10449-PA | 155 | GI10449-PA | 1..154 | 1..150 | 499 | 63.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13502-PA | 155 | GL13502-PA | 10..155 | 5..151 | 640 | 81.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13779-PA | 155 | GA13779-PA | 10..155 | 5..151 | 640 | 81.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12207-PA | 151 | GM12207-PA | 1..151 | 1..151 | 776 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17586-PA | 151 | GD17586-PA | 1..151 | 1..151 | 779 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10666-PA | 154 | GJ10666-PA | 1..153 | 1..150 | 477 | 63.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14094-PA | 154 | GK14094-PA | 10..154 | 5..151 | 497 | 66.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10414-PA | 151 | GE10414-PA | 1..151 | 1..151 | 775 | 98 | Plus |