Clone GH28067 Report

Search the DGRC for GH28067

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:280
Well:67
Vector:pOT2
Associated Gene/Transcriptblanks-RA
Protein status:GH28067.pep: gold
Sequenced Size:1294

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10630 2004-02-02 Blastp of sequenced clone
CG10630 2008-04-29 Release 5.5 accounting
CG10630 2008-08-15 Release 5.9 accounting
CG10630 2008-12-18 5.12 accounting

Clone Sequence Records

GH28067.complete Sequence

1294 bp assembled on 2006-11-09

GenBank Submission: BT011547

> GH28067.complete
ACAGTACAAAAGTTTTGTGGAAGCGGAGCTAATTTGTGTTTTAAAAGTTT
TGTAAAGGCGGAGCTAATTTGTGTTTTAAATAATGGAAGCAAAGCAATTG
TTGGCTGAAAGTTGTGCAAAGGTGGACATCTTAGAGATGAAGAAGGCATT
GATCCCAAATCCTTCTGCCGAAGAGGATGCAGTTGCTGTAATTCCGCTCG
CAGATAATTTGAAGAAAACTGCTATGGGCGGGGAAAATAAAAGCGATGAG
AAGGGAACTGTTTCTTCTGAGCCAAAGGCTCTCAGTGATCAAATCACATC
TTCTATGCGTGTTACCAAAAACAAAATCGCCGATGATAAATCTTCTGACG
TTATCACTGATGACGCAACCAATGGCCGTAAGAAGCAAAAGAAAAATAAA
AAGGCAAAAATTCGCCCGTTGACCATGCCCGTGACCTCCAAGGATGCCCT
TATGGTTTTGAATGAGTTAAAGGGCGTGACAGTCGACAATATGCAAATAA
AACGAGACCACGAGGGAAAGATTATGGCTCGCGTTGTTGTTAACTCAAAG
AAATACGAAGCCGAGGGTTCTTCAGTAAACTCTGCAAGGAATGCAGCTTG
CGAGAAGGCACTGCAGGAAATCCTAACCACCAAAATGAAAGCTGTGTTGG
ACGGGCCAGGAAAGAGCTTGGAAAGCGATGAGGATGATATACTCGAAAAG
ATGGCCTCTTATGCCATTCACAAACTTGGTGAGGAATGGAAGACCGATGA
TATTGATGTCGCAACCCTGTATAATGACTTGAAGAACAAGCAGACGTCTG
TTGTCGAGCCAAAGAAGCCGTTGCCCGAAACATGGAAGAATATGCACCCT
TGCATGGTTCTTAACTATATGCGCCCCCAGTGCACCTTTATAGTTTCAGG
TGGCACTGGTACAAACCAGAATAATACTTTCTCCATGAGCGTCTGTGTGG
ACAACTGCGAGTTTAATGCTGAAGGGCCATCCAAGAAGGCAGCCCGTTAC
AAACTATCCGCTTTAGTTTGTAACAAACTATTTGGAACCGACTATCCACA
AAAATAAACGAAAACATCACATGATTCTGGGCACCCGGTAGTACTTTAAA
ACGTATTAGCGGCATTCCCCACAAACTACACGAAATACTGACTTGAAGAA
AAAAAAAAAAAATAATACATTGCAACAAATAACACTTTTCATTGAATTAA
TTTGTATCGTAAATAAAACGAATAAAACTTAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

GH28067.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10630-RA 1303 CG10630-RA 64..1296 1..1233 6165 100 Plus
CG12493-RA 1172 CG12493-RA 378..765 411..798 1265 88.4 Plus
CG12493-RA 1172 CG12493-RA 886..1097 928..1138 495 83 Plus
CG12493-RA 1172 CG12493-RA 781..878 820..917 220 81.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 5490134..5491160 1230..202 4745 97.9 Minus
chr3L 24539361 chr3L 4751892..4752589 1117..411 1705 83.7 Minus
chr3L 24539361 chr3L 5491331..5491533 203..1 1015 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:11:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 5497530..5498561 1233..202 5160 100 Minus
3L 28110227 3L 4752490..4753187 1117..411 1705 83.7 Minus
3L 28110227 3L 5498728..5498930 203..1 1015 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:06:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 5490630..5491661 1233..202 5160 100 Minus
3L 28103327 3L 4752800..4753187 798..411 1265 88.4 Minus
3L 28103327 3L 5491828..5492030 203..1 1015 100 Minus
3L 28103327 3L 4752468..4752679 1138..928 495 83 Minus
3L 28103327 3L 4752687..4752784 917..820 220 81.6 Minus
Blast to na_te.dros performed 2019-03-15 16:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
Stalker2 7672 Stalker2 STALKER2 7672bp 1455..1537 1147..1230 129 64.7 Plus
HMS-Beagle2 7220 HMS-Beagle2 Beagle2 7220bp 1749..1790 1141..1182 111 73.8 Plus

GH28067.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:10:05 Download gff for GH28067.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 5490134..5491158 204..1230 97 <- Minus
chr3L 5491331..5491533 1..203 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:59:33 Download gff for GH28067.complete
Subject Subject Range Query Range Percent Splice Strand
CG10630-RA 1..975 83..1057 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:20:02 Download gff for GH28067.complete
Subject Subject Range Query Range Percent Splice Strand
CG10630-RA 1..975 83..1057 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:53:26 Download gff for GH28067.complete
Subject Subject Range Query Range Percent Splice Strand
blanks-RA 1..975 83..1057 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:36:54 Download gff for GH28067.complete
Subject Subject Range Query Range Percent Splice Strand
CG10630-RA 1..975 83..1057 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:27:36 Download gff for GH28067.complete
Subject Subject Range Query Range Percent Splice Strand
blanks-RA 1..975 83..1057 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 17:48:20 Download gff for GH28067.complete
Subject Subject Range Query Range Percent Splice Strand
CG10630-RA 1..1230 1..1230 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:20:02 Download gff for GH28067.complete
Subject Subject Range Query Range Percent Splice Strand
CG10630-RA 29..1258 1..1230 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:26 Download gff for GH28067.complete
Subject Subject Range Query Range Percent Splice Strand
blanks-RA 29..1258 1..1230 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 15:36:54 Download gff for GH28067.complete
Subject Subject Range Query Range Percent Splice Strand
CG10630-RA 1..1230 1..1230 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:27:36 Download gff for GH28067.complete
Subject Subject Range Query Range Percent Splice Strand
blanks-RA 29..1258 1..1230 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:05 Download gff for GH28067.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5497533..5498559 204..1230 100 <- Minus
3L 5498728..5498930 1..203 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:05 Download gff for GH28067.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5497533..5498559 204..1230 100 <- Minus
3L 5498728..5498930 1..203 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:10:05 Download gff for GH28067.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5497533..5498559 204..1230 100 <- Minus
3L 5498728..5498930 1..203 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:26 Download gff for GH28067.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 5490633..5491659 204..1230 100 <- Minus
arm_3L 5491828..5492030 1..203 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 12:49:10 Download gff for GH28067.complete
Subject Subject Range Query Range Percent Splice Strand
3L 5490633..5491659 204..1230 100 <- Minus
3L 5491828..5492030 1..203 100   Minus

GH28067.pep Sequence

Translation from 82 to 1056

> GH28067.pep
MEAKQLLAESCAKVDILEMKKALIPNPSAEEDAVAVIPLADNLKKTAMGG
ENKSDEKGTVSSEPKALSDQITSSMRVTKNKIADDKSSDVITDDATNGRK
KQKKNKKAKIRPLTMPVTSKDALMVLNELKGVTVDNMQIKRDHEGKIMAR
VVVNSKKYEAEGSSVNSARNAACEKALQEILTTKMKAVLDGPGKSLESDE
DDILEKMASYAIHKLGEEWKTDDIDVATLYNDLKNKQTSVVEPKKPLPET
WKNMHPCMVLNYMRPQCTFIVSGGTGTNQNNTFSMSVCVDNCEFNAEGPS
KKAARYKLSALVCNKLFGTDYPQK*

GH28067.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 00:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10760-PA 296 GF10760-PA 79..294 113..321 212 28.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 00:39:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14132-PA 310 GG14132-PA 1..309 19..322 753 50 Plus
Dere\GG17525-PA 395 GG17525-PA 141..389 100..321 344 33.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 00:39:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH17808-PA 279 GH17808-PA 28..275 100..321 342 34.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:28:03
Subject Length Description Subject Range Query Range Score Percent Strand
blanks-PA 324 CG10630-PA 1..324 1..324 1659 100 Plus
CG12493-PA 296 CG12493-PA 5..295 18..323 795 56.4 Plus
CG12493-PB 293 CG12493-PB 5..292 18..323 791 56.4 Plus
DIP1-PH 309 CG17686-PH 7..303 55..321 353 31 Plus
DIP1-PI 378 CG17686-PI 76..372 55..321 353 31 Plus
DIP1-PG 378 CG17686-PG 76..372 55..321 353 31 Plus
DIP1-PE 378 CG17686-PE 76..372 55..321 353 31 Plus
DIP1-PF 394 CG17686-PF 92..388 55..321 353 31 Plus
DIP1-PC 395 CG17686-PC 93..389 55..321 353 31 Plus
DIP1-PB 409 CG17686-PB 107..403 55..321 353 31 Plus
DIP1-PD 410 CG17686-PD 108..404 55..321 353 31 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 00:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14602-PA 338 GI14602-PA 75..333 100..321 322 32.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 00:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13431-PA 392 GL13431-PA 136..387 100..321 339 36.2 Plus
Dper\GL27226-PA 244 GL27226-PA 4..240 120..321 253 32.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 00:39:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14612-PA 392 GA14612-PA 136..387 100..321 340 36.2 Plus
Dpse\GA26778-PA 311 GA26778-PA 186..307 199..321 161 34.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 00:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13918-PA 332 GM13918-PA 1..332 19..324 934 59.2 Plus
Dsec\GM13952-PA 300 GM13952-PA 4..299 13..323 813 56.2 Plus
Dsec\GM19637-PA 364 GM19637-PA 112..358 100..321 342 34.9 Plus
Dsec\GM13527-PA 400 GM13527-PA 148..394 100..321 340 34.9 Plus
Dsec\GM13531-PA 392 GM13531-PA 140..386 100..321 337 34.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 00:39:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13198-PA 257 GD13198-PA 1..257 82..324 908 68.9 Plus
Dsim\GD13235-PA 304 GD13235-PA 4..303 9..323 825 56 Plus
Dsim\GD24670-PA 400 GD24670-PA 148..394 100..321 344 35.3 Plus
Dsim\GD15489-PA 380 GD15489-PA 155..374 100..321 308 33.6 Plus
Dsim\GD24430-PA 110 GD24430-PA 20..104 242..321 183 41.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 00:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ19010-PA 375 GJ19010-PA 127..370 100..321 354 35.7 Plus
Dvir\GJ10989-PA 199 GJ10989-PA 4..197 120..321 284 35.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 00:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25242-PA 412 GK25242-PA 128..407 100..321 334 32.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 00:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20559-PA 404 GE20559-PA 40..403 6..323 728 46.3 Plus
Dyak\GE15285-PA 392 GE15285-PA 143..386 100..321 360 36.9 Plus

GH28067.hyp Sequence

Translation from 82 to 1056

> GH28067.hyp
MEAKQLLAESCAKVDILEMKKALIPNPSAEEDAVAVIPLADNLKKTAMGG
ENKSDEKGTVSSEPKALSDQITSSMRVTKNKIADDKSSDVITDDATNGRK
KQKKNKKAKIRPLTMPVTSKDALMVLNELKGVTVDNMQIKRDHEGKIMAR
VVVNSKKYEAEGSSVNSARNAACEKALQEILTTKMKAVLDGPGKSLESDE
DDILEKMASYAIHKLGEEWKTDDIDVATLYNDLKNKQTSVVEPKKPLPET
WKNMHPCMVLNYMRPQCTFIVSGGTGTNQNNTFSMSVCVDNCEFNAEGPS
KKAARYKLSALVCNKLFGTDYPQK*

GH28067.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:47:28
Subject Length Description Subject Range Query Range Score Percent Strand
blanks-PA 324 CG10630-PA 1..324 1..324 1659 100 Plus
CG12493-PA 296 CG12493-PA 5..295 18..323 795 56.4 Plus
CG12493-PB 293 CG12493-PB 5..292 18..323 791 56.4 Plus
DIP1-PH 309 CG17686-PH 7..303 55..321 353 31 Plus
DIP1-PI 378 CG17686-PI 76..372 55..321 353 31 Plus