Clone GH28353 Report

Search the DGRC for GH28353

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:283
Well:53
Vector:pOT2
Associated Gene/TranscriptCG7206-RA
Protein status:GH28353.pep: wuzgold
Preliminary Size:1711
Sequenced Size:1631

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG7206 2001-01-01 Release 2 assignment
CG7206 2001-07-04 Blastp of sequenced clone
CG7206 2003-01-01 Sim4 clustering to Release 3
CG7206 2008-04-29 Release 5.5 accounting
CG7206 2008-08-15 Release 5.9 accounting
CG7206 2008-12-18 5.12 accounting

Clone Sequence Records

GH28353.complete Sequence

1631 bp (1631 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051633

> GH28353.complete
ATTGAAATACAAAATAAATGAGTACTTCCTAGAAATCAAATGTTAAAGAA
CACAATATGTCGCTCGGTGGAGAAAGTAAGCACACGCCAAAGTCTTCCAA
TCTGAGGCCGTTGGACGACGACCAGCTGGTTAGGATCATCAGCACGCCAC
GTCCGTCAAATGGAGTGAGCCAGCATCCCGCCCAGGACCGCCTCAAGCGC
CTGCAGGGCCAACTAAAGCGGGTGCAGGACAACGAGAAGGAGCAGGGGAC
CACCAAGCGGATCACCCACAGTTCCTCCGCATCTCGTCGATCAAGTGCGT
CCACATCTACGCCCCAGCGACTCCTGAAGTTTCCGCCTAAGGTGGCGATG
AATGCCTGGGAAAAGCCAAAAGCCCTGGTCGATGCCAATCGCCTGAAGGC
GGGACGTACCCAAACTGGTGAGTGCCCGGTGCATATAGTTACTCATATCC
CATGTTCTCCTTATCGTCTCCCTAGCCTACCAGCGTCTCATGCTGTTAAG
AGCTTCGCTGCAGCAGAAGCAGCTATATGAGGAGCGCAACAACAATATTG
TGGCCAAGATCAACGAAGAGGTGATAGAAAAACAACCAGAAGCCTGCAAC
ATCACAAATCCAAGTGCATTTGATGGCTCGACGGCCAGCGATATGGAGGT
CGAGCCCATGGAATGGCAGGAGTCTATTGAAGAGGAGGCGGCACAGAATG
ATCAGGATGAGGCTAAGAAAGGGGACGACACTCTATTGATGCTGCCGGCG
GAGTCCATTGAAGAGGAGGCGCCACAGAAAGGTCAGGATGAGGCTAAGGA
AGAGGACGACACTATATTGATGCTGCAGGCGGCCGATGCCGAGGAGCTGC
CCCCAAGGCTTGAGGATTACATGTACTTTGTGCTGGACACCAACGTCCTC
ATACACAACCACAAGTTCGTGGAGAGACTGACCGATGTGGTGCTGCCGGG
CACGGTGGGCAGCATGCTGTACCTTCCGTACATAGTAATCAAAGAGCTGG
ACAAGCTAAAGAGCAAGTACCAGTCGGACTGCCTGCAGCGTGTGATTGCC
ATGCGAGCAATACGCTTTTTGAACACCAAGTTCGACGAAAGCTTTCAAAT
ACAAGCTCAATCCGCTTTGGAGGAGGCGGATCACCTGATCAAGATCGACT
GCCCGGATGACAGCATTTTGAATTGCTGCCTGCAGCTGCAGGCGCAGGTT
CCCCACATGATCCTGCTCACCAACGACGCGAACCTTCGGCTCAAGGCCAA
TGCCTCCAACATTCAGGTCTCCTGTCGCTCTGATCTGATGTCCACCTATG
TGGATGAGTTCGCTGGCTTCGGCGATTAACTCGATGCCGTCCGAGCTCCC
ACCTTACATTTAGTATACGAAAGACTGTGACTGCGTTTGTGATACGGGAT
CGGGTGGCGGGCGAAAGGGATCGACCAGTCAAGCAAGATGCACCGCGGCA
TACATGAAGTACAATGAATCTTTATACCCACAAACATCATCTAGCATACA
TTCAGAGGAAGGCCACTGACGACGTGTTCACCCAAGACTAAAAACTTGCA
CATATTAGAAGATCAGATTTGACTGCCATTTGCTACGTATAATAAAGTTT
GTTTCTGGATATAAAAAAAAAAAAAAAAAAA

GH28353.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG7206-RA 1850 CG7206-RA 59..1671 1..1613 8065 100 Plus
CG7206-RB 1780 CG7206-RB 463..1601 475..1613 5695 100 Plus
CG7206-RB 1780 CG7206-RB 47..463 1..417 2085 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 17978620..17979563 1105..162 4720 100 Minus
chrX 22417052 chrX 17978050..17978558 1612..1104 2545 100 Minus
chrX 22417052 chrX 17979641..17979803 163..1 815 100 Minus
chrX 22417052 chrX 17978893..17978975 751..669 295 90.4 Minus
chrX 22417052 chrX 17978974..17979056 832..750 295 90.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:12:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18089295..18090238 1105..162 4720 100 Minus
X 23542271 X 18088724..18089233 1613..1104 2550 100 Minus
X 23542271 X 18090316..18090478 163..1 815 100 Minus
X 23542271 X 18089568..18089650 751..669 295 90.4 Minus
X 23542271 X 18089649..18089731 832..750 295 90.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 18097393..18098336 1105..162 4720 100 Minus
X 23527363 X 18096822..18097331 1613..1104 2550 100 Minus
X 23527363 X 18098414..18098576 163..1 815 100 Minus
Blast to na_te.dros performed on 2019-03-15 15:20:15 has no hits.

GH28353.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:21:17 Download gff for GH28353.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 17978050..17978556 1106..1612 100 <- Minus
chrX 17978620..17979562 163..1105 100 <- Minus
chrX 17979642..17979803 1..162 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:59:41 Download gff for GH28353.complete
Subject Subject Range Query Range Percent Splice Strand
CG7206-RB 1..358 57..414 100 == Plus
CG7206-RB 359..1215 472..1329 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:23:24 Download gff for GH28353.complete
Subject Subject Range Query Range Percent Splice Strand
CG7206-RB 359..1215 472..1329 99   Plus
CG7206-RB 1..358 57..414 100 == Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:24:29 Download gff for GH28353.complete
Subject Subject Range Query Range Percent Splice Strand
CG7206-RB 1..358 57..414 100 == Plus
CG7206-RB 359..1215 472..1329 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:56:09 Download gff for GH28353.complete
Subject Subject Range Query Range Percent Splice Strand
CG7206-RB 1..358 57..414 100 == Plus
CG7206-RB 359..1215 472..1329 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:02:38 Download gff for GH28353.complete
Subject Subject Range Query Range Percent Splice Strand
CG7206-RB 1..358 57..414 100 == Plus
CG7206-RB 359..1215 472..1329 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:21:03 Download gff for GH28353.complete
Subject Subject Range Query Range Percent Splice Strand
CG7206-RA 32..1643 1..1612 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:23:24 Download gff for GH28353.complete
Subject Subject Range Query Range Percent Splice Strand
CG7206-RA 32..1643 1..1612 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:24:29 Download gff for GH28353.complete
Subject Subject Range Query Range Percent Splice Strand
CG7206-RC 32..1643 1..1612 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:56:09 Download gff for GH28353.complete
Subject Subject Range Query Range Percent Splice Strand
CG7206-RA 32..1643 1..1612 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:02:38 Download gff for GH28353.complete
Subject Subject Range Query Range Percent Splice Strand
CG7206-RC 32..1643 1..1612 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:21:17 Download gff for GH28353.complete
Subject Subject Range Query Range Percent Splice Strand
X 18088725..18089231 1106..1612 100 <- Minus
X 18089295..18090237 163..1105 100 <- Minus
X 18090317..18090478 1..162 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:21:17 Download gff for GH28353.complete
Subject Subject Range Query Range Percent Splice Strand
X 18088725..18089231 1106..1612 100 <- Minus
X 18089295..18090237 163..1105 100 <- Minus
X 18090317..18090478 1..162 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:21:17 Download gff for GH28353.complete
Subject Subject Range Query Range Percent Splice Strand
X 18088725..18089231 1106..1612 100 <- Minus
X 18089295..18090237 163..1105 100 <- Minus
X 18090317..18090478 1..162 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:24:29 Download gff for GH28353.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17984350..17984511 1..162 100   Minus
arm_X 17982758..17983264 1106..1612 100 <- Minus
arm_X 17983328..17984270 163..1105 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:33:54 Download gff for GH28353.complete
Subject Subject Range Query Range Percent Splice Strand
X 18097393..18098335 163..1105 100 <- Minus
X 18096823..18097329 1106..1612 100 <- Minus
X 18098415..18098576 1..162 100   Minus

GH28353.hyp Sequence

Translation from 489 to 1328

> GH28353.hyp
MLLRASLQQKQLYEERNNNIVAKINEEVIEKQPEACNITNPSAFDGSTAS
DMEVEPMEWQESIEEEAAQNDQDEAKKGDDTLLMLPAESIEEEAPQKGQD
EAKEEDDTILMLQAADAEELPPRLEDYMYFVLDTNVLIHNHKFVERLTDV
VLPGTVGSMLYLPYIVIKELDKLKSKYQSDCLQRVIAMRAIRFLNTKFDE
SFQIQAQSALEEADHLIKIDCPDDSILNCCLQLQAQVPHMILLTNDANLR
LKANASNIQVSCRSDLMSTYVDEFAGFGD*

GH28353.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:48:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7206-PB 404 CG7206-PB 126..404 1..279 1424 100 Plus

GH28353.pep Sequence

Translation from 489 to 1328

> GH28353.pep
MLLRASLQQKQLYEERNNNIVAKINEEVIEKQPEACNITNPSAFDGSTAS
DMEVEPMEWQESIEEEAAQNDQDEAKKGDDTLLMLPAESIEEEAPQKGQD
EAKEEDDTILMLQAADAEELPPRLEDYMYFVLDTNVLIHNHKFVERLTDV
VLPGTVGSMLYLPYIVIKELDKLKSKYQSDCLQRVIAMRAIRFLNTKFDE
SFQIQAQSALEEADHLIKIDCPDDSILNCCLQLQAQVPHMILLTNDANLR
LKANASNIQVSCRSDLMSTYVDEFAGFGD*

GH28353.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF19523-PA 389 GF19523-PA 155..387 2..277 693 51.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:05:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG18144-PA 401 GG18144-PA 152..401 3..279 978 68.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15334-PA 516 GH15334-PA 352..511 115..274 551 63.7 Plus
Dgri\GH22729-PA 168 GH22729-PA 1..130 128..261 377 59.7 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG7206-PB 404 CG7206-PB 126..404 1..279 1424 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15928-PA 411 GI15928-PA 227..408 97..278 566 59.3 Plus
Dmoj\GI18514-PA 319 GI18514-PA 157..295 126..268 389 58 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:05:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL24396-PA 450 GL24396-PA 220..449 3..277 616 49.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA23614-PA 527 GA23614-PA 297..526 3..277 614 48.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:05:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22837-PA 403 GM22837-PA 126..403 1..279 1307 89.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ16833-PA 458 GJ16833-PA 199..453 3..274 615 51.8 Plus
Dvir\GJ21376-PA 205 GJ21376-PA 43..181 126..268 395 58 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25857-PA 400 GK25857-PA 223..398 105..274 554 61.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:05:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15554-PA 403 GE15554-PA 154..403 3..279 939 68.2 Plus