Clone GH28366 Report

Search the DGRC for GH28366

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:283
Well:66
Vector:pOT2
Associated Gene/TranscriptCG8248-RA
Protein status:GH28366.pep: validated full length
Preliminary Size:1184
Sequenced Size:1047

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8248 2001-01-01 Release 2 assignment
CG8248 2001-10-10 Blastp of sequenced clone
CG8248 2003-01-01 Sim4 clustering to Release 3
CG8248 2008-04-29 Release 5.5 accounting
CG8248 2008-08-15 Release 5.9 accounting
CG8248 2008-12-18 5.12 accounting

Clone Sequence Records

GH28366.complete Sequence

1047 bp (1047 high quality bases) assembled on 2001-10-10

GenBank Submission: AY060814

> GH28366.complete
CAAACACCGAAAAGCAAGTGCCGTGAGTAGGGACACGGATACAAATAACC
ATCATGTGGTGCCGCTGGGGATCCTCGTGGTGCTCTGCACTGTGTATCTC
ATGGTAGCCGGGATGCAGCGCAACTACAGGCACTATTTTAAGCCGGGCGT
GGCTGCCTTCGACCTGCACCATGCCCAGCCGGAAGCCATGGCCGACGCCG
AATTGGATGTCGCCGCTCCAGATGCATCGTGCCAGAGGTTGGACGTTTTC
GGAAAGGAATCCAATCGGAATCAGGCAGTTTCAAGAAGATCCCAAGGCAG
GCCCACGAAGAGAACCAAAAACGGCACTGGAAATGGGGTCAGCAAGCAAC
CTCGTCGTTTGATAAAGTCCCCGGAGGGGCACAAGAAGAAGGAAGTTGGC
AAGAAGAGTAACACAGCGGAGCCCATTATTTACCTGTTCGCCCTTGTGTT
TGTCTATCTGCTTCTGAAGGCCGCCTCGGACATCAACCAGCACTACAAGT
CGCAGAACAAAGGGGACAAGCGACTGCGCCGGTGCTCGCTGCAATCTTAT
GCCCAGATCCACAAGCAGGATCGCCGGTCATCAAAAGGTATTTCACCAAA
ATCTTTGCCAAAGTTTTAGCTCGCTGGGGGCCAGGTGCCTAGCCTATTAC
ACCGTGTTAACGAGGGATCAAGTGAATTGTTATCCTATAAATCTAAATGT
ATCTACCACTATGTACTGAACTAGCCAATCTTCTCTACTCTAAAGCACCA
GTTTTCTGACTTTTTCGGAAAATGTATTGTTGTGTATTGTGTATCTCTCG
TCTGTCCTCAATCTCTATACATCTATACATCTGTACATCGCACTTTTCGG
GCTCGATTATGCGTTTGATATCTGTGTTTTTGAACGACCTCCACTGTTTA
CCTCCTCTTCACCTATCTGTGAAACTGTACTGAATCCGAATATAAGGTTG
TACATACTCGAATGTATATTACTGTCCTAAGTGTACGTAATCCTAAAATA
AATCAATTACTATGTGCTTTCCTGTGATCAAAAAAAAAAAAAAAAAA

GH28366.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:58:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG8248-RA 1473 CG8248-RA 443..1473 1..1031 5155 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:30:07
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 4806491..4807018 1029..502 2640 100 Minus
chr2R 21145070 chr2R 4807075..4807576 502..1 2510 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:12:02 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8918938..8919467 1031..502 2650 100 Minus
2R 25286936 2R 8919524..8920025 502..1 2510 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 8920137..8920666 1031..502 2650 100 Minus
2R 25260384 2R 8920723..8921224 502..1 2510 100 Minus
Blast to na_te.dros performed on 2019-03-15 21:30:05 has no hits.

GH28366.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:30:48 Download gff for GH28366.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 4806491..4807017 503..1029 100 <- Minus
chr2R 4807075..4807576 1..502 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:59:42 Download gff for GH28366.complete
Subject Subject Range Query Range Percent Splice Strand
CG8248-RA 66..684 1..619 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:58:00 Download gff for GH28366.complete
Subject Subject Range Query Range Percent Splice Strand
CG8248-RA 66..684 1..619 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:50:33 Download gff for GH28366.complete
Subject Subject Range Query Range Percent Splice Strand
CG8248-RA 66..684 1..619 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:41:04 Download gff for GH28366.complete
Subject Subject Range Query Range Percent Splice Strand
CG8248-RA 66..684 1..619 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:44 Download gff for GH28366.complete
Subject Subject Range Query Range Percent Splice Strand
CG8248-RA 66..684 1..619 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:12:19 Download gff for GH28366.complete
Subject Subject Range Query Range Percent Splice Strand
CG8248-RA 342..1370 1..1029 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:58:00 Download gff for GH28366.complete
Subject Subject Range Query Range Percent Splice Strand
CG8248-RA 342..1370 1..1029 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:50:33 Download gff for GH28366.complete
Subject Subject Range Query Range Percent Splice Strand
CG8248-RA 344..1372 1..1029 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:41:04 Download gff for GH28366.complete
Subject Subject Range Query Range Percent Splice Strand
CG8248-RA 342..1370 1..1029 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:44 Download gff for GH28366.complete
Subject Subject Range Query Range Percent Splice Strand
CG8248-RA 344..1372 1..1029 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:48 Download gff for GH28366.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8918940..8919466 503..1029 100 <- Minus
2R 8919524..8920025 1..502 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:48 Download gff for GH28366.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8918940..8919466 503..1029 100 <- Minus
2R 8919524..8920025 1..502 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:30:48 Download gff for GH28366.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8918940..8919466 503..1029 100 <- Minus
2R 8919524..8920025 1..502 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:50:33 Download gff for GH28366.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4807029..4807530 1..502 100   Minus
arm_2R 4806445..4806971 503..1029 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 18:24:12 Download gff for GH28366.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8920723..8921224 1..502 100   Minus
2R 8920139..8920665 503..1029 100 <- Minus

GH28366.hyp Sequence

Translation from 0 to 618

> GH28366.hyp
KHRKASAVSRDTDTNNHHVVPLGILVVLCTVYLMVAGMQRNYRHYFKPGV
AAFDLHHAQPEAMADAELDVAAPDASCQRLDVFGKESNRNQAVSRRSQGR
PTKRTKNGTGNGVSKQPRRLIKSPEGHKKKEVGKKSNTAEPIIYLFALVF
VYLLLKAASDINQHYKSQNKGDKRLRRCSLQSYAQIHKQDRRSSKGISPK
SLPKF*

GH28366.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:48:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG8248-PA 227 CG8248-PA 23..227 1..205 1063 100 Plus
CG8248-PB 226 CG8248-PB 23..226 1..205 1046 99.5 Plus

GH28366.pep Sequence

Translation from 100 to 618

> GH28366.pep
MVAGMQRNYRHYFKPGVAAFDLHHAQPEAMADAELDVAAPDASCQRLDVF
GKESNRNQAVSRRSQGRPTKRTKNGTGNGVSKQPRRLIKSPEGHKKKEVG
KKSNTAEPIIYLFALVFVYLLLKAASDINQHYKSQNKGDKRLRRCSLQSY
AQIHKQDRRSSKGISPKSLPKF*

GH28366.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:55:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12991-PA 349 GF12991-PA 49..211 1..162 509 62.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG10608-PA 232 GG10608-PA 55..232 1..172 780 85 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22685-PA 335 GH22685-PA 43..200 1..162 339 50.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8248-PA 227 CG8248-PA 56..227 1..172 891 100 Plus
CG8248-PB 226 CG8248-PB 56..226 1..172 874 99.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20613-PA 174 GI20613-PA 1..174 1..172 390 52.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10406-PA 225 GL10406-PA 45..225 1..172 531 60.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:55:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20928-PB 355 GA20928-PB 45..219 1..162 475 57.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20653-PA 226 GM20653-PA 56..226 1..172 821 91.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:55:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10127-PA 226 GD10127-PA 56..226 1..172 851 93.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21053-PA 178 GJ21053-PA 1..178 1..172 374 48.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:55:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10753-PA 322 GK10753-PA 46..197 3..162 347 49.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:55:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22711-PA 231 GE22711-PA 55..231 1..172 713 80 Plus