Clone GH28477 Report

Search the DGRC for GH28477

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:284
Well:77
Vector:pOT2
Associated Gene/TranscriptCG6550-RA
Protein status:GH28477.pep: gold
Preliminary Size:1819
Sequenced Size:1772

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6550 2001-01-01 Release 2 assignment
CG6550 2001-07-04 Blastp of sequenced clone
CG6550 2003-01-01 Sim4 clustering to Release 3
CG6550 2008-04-29 Release 5.5 accounting
CG6550 2008-08-15 Release 5.9 accounting
CG6550 2008-12-18 5.12 accounting

Clone Sequence Records

GH28477.complete Sequence

1772 bp (1772 high quality bases) assembled on 2001-07-04

GenBank Submission: AY051634

> GH28477.complete
CTGGAAGTGCGGCACATGTGTTTTGGCATAGAATCTAAAACAAGGAGAAG
GAAAAACAATGTACCACCTTGGACAGGATCTGCCAGGCAACGATGTGGAT
GATATAGAGGATCTGATATCCGCCGATGATGTCAAGCCGCGTGAGCGCTA
CGAAAACAAAAAAACCGTTACGGTTCGGGCCAAGAAACGATCCCAAATTC
GACTTGAATCTCAAGAGGAGGAGGAAAAGCCGAAGCCCACGATCCACGAG
AGTGTCATACCCGGCACCCAGAAAGTTTTTGTGAAAACATGGGGCTGCGC
CCACAACAATTCGGACTCGGAGTACATGGCCGGGCAGTTGGCTGCCTACG
GATATAGATTGAGTGGAAAGGAGGAGGCGGATCTGTGGCTGCTCAATAGC
TGCACGGTTAAGAATCCTTCGGAGGACACTTTCCGCAACGAGATTGAGTC
GGGAATGCGAAATGGCAAGCACGTCGTGGTTGCCGGTTGCGTTCCCCAGG
GAGCTCCCAAATCGGACTATCTGAACGGTCTTTCCGTAATCGGTGTCCAG
CAAATCGACCGAGTGGTGGAGGTCGTTGAAGAGACCCTCAAGGGTCACAG
TGTCCAGCTGTTGCAAAACAAAAAGAAGGTCCATGGTCGGCGGGTAGCTG
GAGCACCACTCTCATTACCCAAAGTCCGCAAAAATCCATTAATAGAAATC
ATATCCATCAACTCTGGATGCCTAAATCAATGTACCTACTGCAAGACTAA
ACACGCCCGCGGTGACTTGGCCAGCTATCCCCCGGAGGAGGTTGTAGAGC
GCGCCCGCCAATCGTTTGCTGAAGGCTGCTGCGAGATCTGGCTTACTTCC
GAGGATACAGGAGCTTATGGTCGAGATATTGGAAGCTCATTGCCGGAATT
GCTCTGGCAACTGGTGGAAGTGATCCCCGAGCACTGCATGTTGCGTGTAG
GCATGACCAATCCACCGTATATACTGGAGCATCTCGAGGAAGTGGCCAAC
GTCTTGCAGCACCCGAGAGTCTACTCCTTTTTACATGTTCCTGTACAGAG
TGGTAGTGACTCTGTGCTGGGCGAGATGAAACGAGAGTACTGTCGGCAGG
ACTTTGAGCACGTTGTGGATTTCTTAAGGGAACGAGTTCCCGGTGTCACG
ATTGCCACGGATATAATTTGTGGTTTCCCAACAGAGACAGAAGACGATTT
CGAGGAGACGATGACCCTTTGCGCCAAATATCGCTTTCCCAGTCTGTTCA
TCAATCAGTTCTTCCCTCGTCCGGGCACACCAGCTGCTAAGATGGATCGC
ATCCCCGCAAACCTGGTGAAGAAACGAACTAAACGTCTCACGGATCTCTT
CTACAGCTATGAACCCTATGCGGACAGAGTGGGTGAAATATACACCGTCT
TGGTCACAGAAGTTTCACACGACAAGCTCCATTACGTGGGCCACAACAAG
AGCTACGAGCAAGTACTGCTGCCCATGCGGGATAACCTTCTTGGTACTCG
TGTCCATGTGCGAATTACCAGTGCGAGCAAGTTTAGCATGGTGGGAGAAA
TTTTAGACGACGAACGCGATTGGACGAGGTGTGCAAAAAATCAGGAGTTA
CCAAACGTTCAAGTGCAAACCAGGAGTCGGGAAAGACTAATCCAACGCTA
TTTTGGCATCGCTTTGGTGTTGGGAAGTCTTGCTTTCCTCATACAGCTTG
TAGTTCGACTCTTATAGCCACATCAATAAAACATCTCGTTCCAAATTCAT
AAAAAAAAAAAAAAAAAAAAAA

GH28477.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6550-RA 1922 CG6550-RA 134..1885 1..1752 8760 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:48:56
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 13313496..13314543 1048..1 5240 100 Minus
chr2R 21145070 chr2R 13312734..13313437 1750..1047 3520 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:12:07 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17426432..17427479 1048..1 5240 100 Minus
2R 25286936 2R 17425668..17426373 1752..1047 3530 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 17427631..17428678 1048..1 5240 100 Minus
2R 25260384 2R 17426867..17427572 1752..1047 3530 100 Minus
Blast to na_te.dros performed on 2019-03-15 16:48:55 has no hits.

GH28477.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:50:05 Download gff for GH28477.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 13312734..13313435 1049..1750 100 <- Minus
chr2R 13313496..13314543 1..1048 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:59:46 Download gff for GH28477.complete
Subject Subject Range Query Range Percent Splice Strand
CG6550-RA 1..1659 59..1717 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:23:14 Download gff for GH28477.complete
Subject Subject Range Query Range Percent Splice Strand
CG6550-RA 1..1659 59..1717 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:22:49 Download gff for GH28477.complete
Subject Subject Range Query Range Percent Splice Strand
CG6550-RA 1..1659 59..1717 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:55:58 Download gff for GH28477.complete
Subject Subject Range Query Range Percent Splice Strand
CG6550-RA 1..1659 59..1717 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:18:00 Download gff for GH28477.complete
Subject Subject Range Query Range Percent Splice Strand
CG6550-RA 1..1659 59..1717 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:20:49 Download gff for GH28477.complete
Subject Subject Range Query Range Percent Splice Strand
CG6550-RA 1..1750 1..1750 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:23:14 Download gff for GH28477.complete
Subject Subject Range Query Range Percent Splice Strand
CG6550-RA 1..1750 1..1750 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:22:49 Download gff for GH28477.complete
Subject Subject Range Query Range Percent Splice Strand
CG6550-RA 33..1782 1..1750 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:55:58 Download gff for GH28477.complete
Subject Subject Range Query Range Percent Splice Strand
CG6550-RA 1..1750 1..1750 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:18:00 Download gff for GH28477.complete
Subject Subject Range Query Range Percent Splice Strand
CG6550-RA 33..1782 1..1750 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:50:05 Download gff for GH28477.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17426432..17427479 1..1048 100   Minus
2R 17425670..17426371 1049..1750 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:50:05 Download gff for GH28477.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17426432..17427479 1..1048 100   Minus
2R 17425670..17426371 1049..1750 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:50:05 Download gff for GH28477.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17426432..17427479 1..1048 100   Minus
2R 17425670..17426371 1049..1750 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:22:49 Download gff for GH28477.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13313175..13313876 1049..1750 100 <- Minus
arm_2R 13313937..13314984 1..1048 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:33:43 Download gff for GH28477.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17426869..17427570 1049..1750 100 <- Minus
2R 17427631..17428678 1..1048 100   Minus

GH28477.pep Sequence

Translation from 58 to 1716

> GH28477.pep
MYHLGQDLPGNDVDDIEDLISADDVKPRERYENKKTVTVRAKKRSQIRLE
SQEEEEKPKPTIHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYR
LSGKEEADLWLLNSCTVKNPSEDTFRNEIESGMRNGKHVVVAGCVPQGAP
KSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAP
LSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEVVERAR
QSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPEHCMLRVGMT
NPPYILEHLEEVANVLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRQDFE
HVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQ
FFPRPGTPAAKMDRIPANLVKKRTKRLTDLFYSYEPYADRVGEIYTVLVT
EVSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEILD
DERDWTRCAKNQELPNVQVQTRSRERLIQRYFGIALVLGSLAFLIQLVVR
LL*

GH28477.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 21:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11786-PA 557 GF11786-PA 1..547 1..542 2700 91.2 Plus
Dana\GF17521-PA 577 GF17521-PA 94..530 71..472 322 25 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 21:01:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22199-PA 557 GG22199-PA 1..553 1..552 2855 96 Plus
Dere\GG17285-PA 586 GG17285-PA 92..535 71..475 326 24.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 21:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20489-PA 554 GH20489-PA 6..543 7..543 2512 86.1 Plus
Dgri\GH23519-PA 214 GH23519-PA 1..203 340..543 881 79.9 Plus
Dgri\GH19109-PA 647 GH19109-PA 158..595 71..472 295 24.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG6550-PA 552 CG6550-PA 1..552 1..552 2896 100 Plus
CG6345-PA 583 CG6345-PA 62..529 42..472 339 23.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 21:01:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21033-PA 554 GI21033-PA 6..552 7..552 2466 85.3 Plus
Dmoj\GI23564-PA 588 GI23564-PA 101..537 71..472 300 23.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 21:01:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10666-PA 553 GL10666-PA 1..553 1..552 2610 89.4 Plus
Dper\GL23830-PA 589 GL23830-PA 98..535 71..475 324 24.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 21:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19679-PA 553 GA19679-PA 1..553 1..552 2611 89.2 Plus
Dpse\GA19527-PA 589 GA19527-PA 98..535 71..475 328 25.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 21:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM19985-PA 556 GM19985-PA 1..552 1..552 2872 96.4 Plus
Dsec\GM26169-PA 583 GM26169-PA 66..529 48..472 319 24.6 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 21:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD25482-PA 556 GD25482-PA 1..552 1..552 2883 96.7 Plus
Dsim\GD20720-PA 583 GD20720-PA 66..529 48..472 323 24.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 21:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21959-PA 553 GJ21959-PA 6..551 7..552 2530 85.3 Plus
Dvir\GJ23539-PA 189 GJ23539-PA 1..94 340..431 149 31.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 21:01:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17257-PA 570 GK17257-PA 4..562 6..552 2468 82.9 Plus
Dwil\GK11551-PA 576 GK11551-PA 88..524 71..472 325 24.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 21:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14196-PA 552 GE14196-PA 1..552 1..552 2799 95.8 Plus
Dyak\GE24685-PA 583 GE24685-PA 66..532 48..475 334 24.9 Plus

GH28477.hyp Sequence

Translation from 58 to 1716

> GH28477.hyp
MYHLGQDLPGNDVDDIEDLISADDVKPRERYENKKTVTVRAKKRSQIRLE
SQEEEEKPKPTIHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYR
LSGKEEADLWLLNSCTVKNPSEDTFRNEIESGMRNGKHVVVAGCVPQGAP
KSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAP
LSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEVVERAR
QSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPEHCMLRVGMT
NPPYILEHLEEVANVLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRQDFE
HVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQ
FFPRPGTPAAKMDRIPANLVKKRTKRLTDLFYSYEPYADRVGEIYTVLVT
EVSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEILD
DERDWTRCAKNQELPNVQVQTRSRERLIQRYFGIALVLGSLAFLIQLVVR
LL*

GH28477.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6550-PA 552 CG6550-PA 1..552 1..552 2896 100 Plus
CG6345-PA 583 CG6345-PA 62..529 42..472 339 23.2 Plus