BDGP Sequence Production Resources |
Search the DGRC for GH28477
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 284 |
Well: | 77 |
Vector: | pOT2 |
Associated Gene/Transcript | CG6550-RA |
Protein status: | GH28477.pep: gold |
Preliminary Size: | 1819 |
Sequenced Size: | 1772 |
Gene | Date | Evidence |
---|---|---|
CG6550 | 2001-01-01 | Release 2 assignment |
CG6550 | 2001-07-04 | Blastp of sequenced clone |
CG6550 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6550 | 2008-04-29 | Release 5.5 accounting |
CG6550 | 2008-08-15 | Release 5.9 accounting |
CG6550 | 2008-12-18 | 5.12 accounting |
1772 bp (1772 high quality bases) assembled on 2001-07-04
GenBank Submission: AY051634
> GH28477.complete CTGGAAGTGCGGCACATGTGTTTTGGCATAGAATCTAAAACAAGGAGAAG GAAAAACAATGTACCACCTTGGACAGGATCTGCCAGGCAACGATGTGGAT GATATAGAGGATCTGATATCCGCCGATGATGTCAAGCCGCGTGAGCGCTA CGAAAACAAAAAAACCGTTACGGTTCGGGCCAAGAAACGATCCCAAATTC GACTTGAATCTCAAGAGGAGGAGGAAAAGCCGAAGCCCACGATCCACGAG AGTGTCATACCCGGCACCCAGAAAGTTTTTGTGAAAACATGGGGCTGCGC CCACAACAATTCGGACTCGGAGTACATGGCCGGGCAGTTGGCTGCCTACG GATATAGATTGAGTGGAAAGGAGGAGGCGGATCTGTGGCTGCTCAATAGC TGCACGGTTAAGAATCCTTCGGAGGACACTTTCCGCAACGAGATTGAGTC GGGAATGCGAAATGGCAAGCACGTCGTGGTTGCCGGTTGCGTTCCCCAGG GAGCTCCCAAATCGGACTATCTGAACGGTCTTTCCGTAATCGGTGTCCAG CAAATCGACCGAGTGGTGGAGGTCGTTGAAGAGACCCTCAAGGGTCACAG TGTCCAGCTGTTGCAAAACAAAAAGAAGGTCCATGGTCGGCGGGTAGCTG GAGCACCACTCTCATTACCCAAAGTCCGCAAAAATCCATTAATAGAAATC ATATCCATCAACTCTGGATGCCTAAATCAATGTACCTACTGCAAGACTAA ACACGCCCGCGGTGACTTGGCCAGCTATCCCCCGGAGGAGGTTGTAGAGC GCGCCCGCCAATCGTTTGCTGAAGGCTGCTGCGAGATCTGGCTTACTTCC GAGGATACAGGAGCTTATGGTCGAGATATTGGAAGCTCATTGCCGGAATT GCTCTGGCAACTGGTGGAAGTGATCCCCGAGCACTGCATGTTGCGTGTAG GCATGACCAATCCACCGTATATACTGGAGCATCTCGAGGAAGTGGCCAAC GTCTTGCAGCACCCGAGAGTCTACTCCTTTTTACATGTTCCTGTACAGAG TGGTAGTGACTCTGTGCTGGGCGAGATGAAACGAGAGTACTGTCGGCAGG ACTTTGAGCACGTTGTGGATTTCTTAAGGGAACGAGTTCCCGGTGTCACG ATTGCCACGGATATAATTTGTGGTTTCCCAACAGAGACAGAAGACGATTT CGAGGAGACGATGACCCTTTGCGCCAAATATCGCTTTCCCAGTCTGTTCA TCAATCAGTTCTTCCCTCGTCCGGGCACACCAGCTGCTAAGATGGATCGC ATCCCCGCAAACCTGGTGAAGAAACGAACTAAACGTCTCACGGATCTCTT CTACAGCTATGAACCCTATGCGGACAGAGTGGGTGAAATATACACCGTCT TGGTCACAGAAGTTTCACACGACAAGCTCCATTACGTGGGCCACAACAAG AGCTACGAGCAAGTACTGCTGCCCATGCGGGATAACCTTCTTGGTACTCG TGTCCATGTGCGAATTACCAGTGCGAGCAAGTTTAGCATGGTGGGAGAAA TTTTAGACGACGAACGCGATTGGACGAGGTGTGCAAAAAATCAGGAGTTA CCAAACGTTCAAGTGCAAACCAGGAGTCGGGAAAGACTAATCCAACGCTA TTTTGGCATCGCTTTGGTGTTGGGAAGTCTTGCTTTCCTCATACAGCTTG TAGTTCGACTCTTATAGCCACATCAATAAAACATCTCGTTCCAAATTCAT AAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6550-RA | 1922 | CG6550-RA | 134..1885 | 1..1752 | 8760 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 13312734..13313435 | 1049..1750 | 100 | <- | Minus |
chr2R | 13313496..13314543 | 1..1048 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6550-RA | 1..1659 | 59..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6550-RA | 1..1659 | 59..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6550-RA | 1..1659 | 59..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6550-RA | 1..1659 | 59..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6550-RA | 1..1659 | 59..1717 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6550-RA | 1..1750 | 1..1750 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6550-RA | 1..1750 | 1..1750 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6550-RA | 33..1782 | 1..1750 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6550-RA | 1..1750 | 1..1750 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6550-RA | 33..1782 | 1..1750 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17426432..17427479 | 1..1048 | 100 | Minus | |
2R | 17425670..17426371 | 1049..1750 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17426432..17427479 | 1..1048 | 100 | Minus | |
2R | 17425670..17426371 | 1049..1750 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17426432..17427479 | 1..1048 | 100 | Minus | |
2R | 17425670..17426371 | 1049..1750 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 13313175..13313876 | 1049..1750 | 100 | <- | Minus |
arm_2R | 13313937..13314984 | 1..1048 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 17426869..17427570 | 1049..1750 | 100 | <- | Minus |
2R | 17427631..17428678 | 1..1048 | 100 | Minus |
Translation from 58 to 1716
> GH28477.pep MYHLGQDLPGNDVDDIEDLISADDVKPRERYENKKTVTVRAKKRSQIRLE SQEEEEKPKPTIHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYR LSGKEEADLWLLNSCTVKNPSEDTFRNEIESGMRNGKHVVVAGCVPQGAP KSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAP LSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEVVERAR QSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPEHCMLRVGMT NPPYILEHLEEVANVLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRQDFE HVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQ FFPRPGTPAAKMDRIPANLVKKRTKRLTDLFYSYEPYADRVGEIYTVLVT EVSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEILD DERDWTRCAKNQELPNVQVQTRSRERLIQRYFGIALVLGSLAFLIQLVVR LL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11786-PA | 557 | GF11786-PA | 1..547 | 1..542 | 2700 | 91.2 | Plus |
Dana\GF17521-PA | 577 | GF17521-PA | 94..530 | 71..472 | 322 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22199-PA | 557 | GG22199-PA | 1..553 | 1..552 | 2855 | 96 | Plus |
Dere\GG17285-PA | 586 | GG17285-PA | 92..535 | 71..475 | 326 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20489-PA | 554 | GH20489-PA | 6..543 | 7..543 | 2512 | 86.1 | Plus |
Dgri\GH23519-PA | 214 | GH23519-PA | 1..203 | 340..543 | 881 | 79.9 | Plus |
Dgri\GH19109-PA | 647 | GH19109-PA | 158..595 | 71..472 | 295 | 24.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6550-PA | 552 | CG6550-PA | 1..552 | 1..552 | 2896 | 100 | Plus |
CG6345-PA | 583 | CG6345-PA | 62..529 | 42..472 | 339 | 23.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21033-PA | 554 | GI21033-PA | 6..552 | 7..552 | 2466 | 85.3 | Plus |
Dmoj\GI23564-PA | 588 | GI23564-PA | 101..537 | 71..472 | 300 | 23.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10666-PA | 553 | GL10666-PA | 1..553 | 1..552 | 2610 | 89.4 | Plus |
Dper\GL23830-PA | 589 | GL23830-PA | 98..535 | 71..475 | 324 | 24.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19679-PA | 553 | GA19679-PA | 1..553 | 1..552 | 2611 | 89.2 | Plus |
Dpse\GA19527-PA | 589 | GA19527-PA | 98..535 | 71..475 | 328 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM19985-PA | 556 | GM19985-PA | 1..552 | 1..552 | 2872 | 96.4 | Plus |
Dsec\GM26169-PA | 583 | GM26169-PA | 66..529 | 48..472 | 319 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25482-PA | 556 | GD25482-PA | 1..552 | 1..552 | 2883 | 96.7 | Plus |
Dsim\GD20720-PA | 583 | GD20720-PA | 66..529 | 48..472 | 323 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21959-PA | 553 | GJ21959-PA | 6..551 | 7..552 | 2530 | 85.3 | Plus |
Dvir\GJ23539-PA | 189 | GJ23539-PA | 1..94 | 340..431 | 149 | 31.9 | Plus |
Translation from 58 to 1716
> GH28477.hyp MYHLGQDLPGNDVDDIEDLISADDVKPRERYENKKTVTVRAKKRSQIRLE SQEEEEKPKPTIHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYR LSGKEEADLWLLNSCTVKNPSEDTFRNEIESGMRNGKHVVVAGCVPQGAP KSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAP LSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEVVERAR QSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPEHCMLRVGMT NPPYILEHLEEVANVLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRQDFE HVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQ FFPRPGTPAAKMDRIPANLVKKRTKRLTDLFYSYEPYADRVGEIYTVLVT EVSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEILD DERDWTRCAKNQELPNVQVQTRSRERLIQRYFGIALVLGSLAFLIQLVVR LL*