Clone GH28534 Report

Search the DGRC for GH28534

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:285
Well:34
Vector:pOT2
Associated Gene/TranscriptTina-1-RB
Protein status:GH28534.pep: gold
Preliminary Size:1583
Sequenced Size:1437

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG2803 2001-01-01 Release 2 assignment
CG2803 2001-07-04 Blastp of sequenced clone
CG2803 2003-01-01 Sim4 clustering to Release 3
Tina-1 2008-04-29 Release 5.5 accounting
Tina-1 2008-08-15 Release 5.9 accounting
Tina-1 2008-12-18 5.12 accounting

Clone Sequence Records

GH28534.complete Sequence

1437 bp (1437 high quality bases) assembled on 2001-07-04

GenBank Submission: AY060353

> GH28534.complete
GGAACTAAATTTAAGGCATTTTAAGTTATCCGATCCATCGGAGGGTTATC
AGATAGTTTATTGGAATTTTTAAGATATCTACATATGTATGAGTGTGAGC
TGATGCCTGTTCTGGGTTATGTAAGCGGATTCGCCAAGATGCTTTGATGC
AACCGTTTGATGACATTGATTTAAGGCCGCTTGCGTGTGTTATCCATTTA
CTGCAATGATTAAACCGATTTAAGCAATTATTAATGTGCCAATTACATGT
GTACAGATAGCGAGTGTCTCCATACATATGTACCTGTGGAGGCGTAACTG
CTGCGCAGTTTGTGAGGCACGCACTCAGCCCCAAAAATACGAAACAGCTA
CGTACATATATTAGCAACAATAACAGACTTTAAGAATAAACGTGTGAATG
CACGAAACCGGTTGAGCCATCCCATTCTCGCCCAAAAAGCGGTTCAGCTG
AGAATCTCGCCAAACACCGAGACGTTTCGTGAACCTTATCAATAACTTGC
GGGGGCTAGCCAGTGGAAAGTGTTCGGATCCCTGATCCCTGATAAGCCAC
GGCGATCGATTGATACCAGTAGAGCAAACTCTCACAAGATACCACCAGTT
TATCAGATCTCTAACCTAACCCTACTTATCTGTCTTTACGCCACACCCAC
CTCTCACGCACTCCACAGAAAGTCTCCTCCGCCTTGAGCAAGCTCTTCGT
GTACGGCGCCCTCAAGTACGGACAGCCCAGCAACTCAATCCTGGCCAGCT
CTGGCAACGGCTTCGCTAAGTTCTGGTGCAAGGCGACCACCACCCAAAAG
CTGCCGCTAGTGATCGCCACCCGCTACAACATTCCCTTCCTGCTGAACAA
GCCCGGAGTGGGATATTACGTAACAGGGGAGATCTACGAGGTGGACGATC
GAATGCTGAATTCCCTGGACAACCTGGAGGATTGCGAGGAGATCTACACT
CGCGAGATGCACGATATGAACATTGGCGTTGGAGAAGGAACCGTTCCATG
CTGGGTGTACCTGCTGCAGAAGTACCCGGAGAACCTACTTAGTCTGCGCT
ACTTGTCCAGCTACGAGAACTCAACCACCCATCCATACATTATGCGCCAT
CGCCGCACCCACAAGCATCCGGCCCAGGACGACCTCACCTACGAGGCCCA
GAACTAATAACGTGGGTTGTGGTGTCGCCCGTTTGTTTGGATGTTCTCTG
GATAGCCTGGCCACTAATCTTATGTTACCGTAGTTGCATTTTAAGACCGT
ACTTGCAGACGCAGATGTACTGATCGATATATACCCGTATATATGGGCAA
ACGATATAAACTGATACATATGTACCATACGCATTATTTAGGTTTTAGCA
AACGTAGTCTGTAATTTGATAGTTTTCGACAAACAAAGCAAATAAACTGA
AGCAATTTAAAATAAAATAAAAAAAAAAAAAAAAAAA

GH28534.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
Tina-1.a 1759 Tina-1.a 297..1718 1..1422 7110 100 Plus
Tina-1-RB 1607 Tina-1-RB 145..1566 1..1422 7110 100 Plus
Tina-1-RA 1044 Tina-1-RA 248..1003 667..1422 3780 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 06:42:08
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 20827076..20828063 988..1 4895 99.7 Minus
chr2R 21145070 chr2R 20826579..20827009 1418..988 2125 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:12:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 06:42:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24941122..24942109 988..1 4940 100 Minus
2R 25286936 2R 24940621..24941055 1422..988 2175 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:55:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 24942321..24943308 988..1 4940 100 Minus
2R 25260384 2R 24941820..24942254 1422..988 2175 100 Minus
Blast to na_te.dros performed on 2019-03-16 06:42:07 has no hits.

GH28534.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 06:42:44 Download gff for GH28534.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 20826579..20827008 989..1418 99 <- Minus
chr2R 20827076..20828063 1..988 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:59:49 Download gff for GH28534.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 7..504 659..1157 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:23:16 Download gff for GH28534.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 7..504 659..1157 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:44:56 Download gff for GH28534.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 7..504 659..1157 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:56:01 Download gff for GH28534.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 7..504 659..1157 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:19:57 Download gff for GH28534.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RA 7..504 659..1157 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:20:53 Download gff for GH28534.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RB 1..1418 1..1418 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:23:16 Download gff for GH28534.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RB 1..1418 1..1418 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:44:56 Download gff for GH28534.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RB 12..1429 1..1418 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:56:01 Download gff for GH28534.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RB 1..1418 1..1418 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:19:57 Download gff for GH28534.complete
Subject Subject Range Query Range Percent Splice Strand
Tina-1-RB 12..1429 1..1418 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:42:44 Download gff for GH28534.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24940625..24941054 989..1418 100 <- Minus
2R 24941122..24942109 1..988 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:42:44 Download gff for GH28534.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24940625..24941054 989..1418 100 <- Minus
2R 24941122..24942109 1..988 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 06:42:44 Download gff for GH28534.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24940625..24941054 989..1418 100 <- Minus
2R 24941122..24942109 1..988 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:44:56 Download gff for GH28534.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20828148..20828577 989..1418 100 <- Minus
arm_2R 20828645..20829632 1..988 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:33:45 Download gff for GH28534.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24941842..24942271 989..1418 100 <- Minus
2R 24942339..24943326 1..988 100   Minus

GH28534.hyp Sequence

Translation from 902 to 1156

> GH28534.hyp
MLNSLDNLEDCEEIYTREMHDMNIGVGEGTVPCWVYLLQKYPENLLSLRY
LSSYENSTTHPYIMRHRRTHKHPAQDDLTYEAQN*

GH28534.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:49:03
Subject Length Description Subject Range Query Range Score Percent Strand
Tina-1-PB 84 CG2803-PB 1..84 1..84 462 100 Plus
Tina-1-PA 167 CG2803-PA 84..167 1..84 462 100 Plus
CG2811-PA 157 CG2811-PA 81..157 1..80 139 38.8 Plus

GH28534.pep Sequence

Translation from 902 to 1156

> GH28534.pep
MLNSLDNLEDCEEIYTREMHDMNIGVGEGTVPCWVYLLQKYPENLLSLRY
LSSYENSTTHPYIMRHRRTHKHPAQDDLTYEAQN*

GH28534.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11524-PA 167 GF11524-PA 84..167 1..84 415 90.5 Plus
Dana\GF11525-PA 153 GF11525-PA 77..153 1..80 149 41.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19875-PA 167 GG19875-PA 84..167 1..84 459 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22048-PA 167 GH22048-PA 84..167 1..84 381 78.6 Plus
Dgri\GH22049-PA 156 GH22049-PA 78..156 1..80 137 38.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:57
Subject Length Description Subject Range Query Range Score Percent Strand
Tina-1-PB 84 CG2803-PB 1..84 1..84 462 100 Plus
Tina-1-PA 167 CG2803-PA 84..167 1..84 462 100 Plus
CG2811-PA 157 CG2811-PA 81..157 1..80 139 38.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19134-PA 168 GI19134-PA 84..165 1..82 412 90.2 Plus
Dmoj\GI19135-PA 156 GI19135-PA 78..156 1..80 139 38.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10895-PA 167 GL10895-PA 84..167 1..84 425 90.5 Plus
Dper\GL10896-PA 153 GL10896-PA 75..153 1..80 135 36.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA15466-PA 167 GA15466-PA 84..167 1..84 425 90.5 Plus
Dpse\GA15469-PA 153 GA15469-PA 75..153 1..80 139 37.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM11776-PA 167 GM11776-PA 84..167 1..84 456 98.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24906-PA 167 GD24906-PA 84..167 1..84 459 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22267-PA 168 GJ22267-PA 84..168 1..84 410 89.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20729-PA 168 GK20729-PA 84..165 1..82 412 91.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11399-PA 167 GE11399-PA 84..167 1..84 452 98.8 Plus