Clone GH28550 Report

Search the DGRC for GH28550

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:285
Well:50
Vector:pOT2
Associated Gene/TranscriptDOR-RA
Protein status:GH28550.pep: gold
Preliminary Size:2055
Sequenced Size:2068

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11347 2001-01-01 Release 2 assignment
CG11347 2002-05-15 Blastp of sequenced clone
CG11347 2003-01-01 Sim4 clustering to Release 3
CG11347 2008-04-29 Release 5.5 accounting
CG11347 2008-08-15 Release 5.9 accounting
CG11347 2008-12-18 5.12 accounting

Clone Sequence Records

GH28550.complete Sequence

2068 bp (2068 high quality bases) assembled on 2002-05-15

GenBank Submission: AY118829

> GH28550.complete
TCGTTGTTGCTAGCATACGTCACGGAGTTCCTGTAGCGCTGCTCTTCTCC
GCACTCTCACCCCCGTCAGTTAAGCAAAAACGGAAGTAATCAGCACAAAA
AACAATAAGCACGCCAATTAAAAAACATTTCGAAAACTGTGTAAAAAGCC
TTGCTGGTGCAAATTATTGCAGAGAATACGGGTAGATTCCGACACCGATC
GATCAATAAACTCCGCGCAGCAACTTCTACGCTACGAAGAAAGAGAAACA
GAACAAGACAAGAGAACAGCGTACAAACAAGTAACATAAACAAATACAAA
AAGAATTAAATAAAAGACTGAGCAACGTTCAAGCAAATCCAAGGAACAAA
ACCAACAGCAACATAAGCAATCTCCCACAAATCGTCTCTCTAACTGTGAA
ACTAGGCCCACAAAAATCCGAGTGGAAAAGCGCATCTTTGATCTCAGCAA
CCCCGCAACCAAGAAGCAATAAAAAGAAAGAGCCAGCGCACTTTACCGCC
GGATCAGCCGCATTAACCTTGTATAATGTTAAGCAGCCTCGCCTCGTATC
TCTTTGGATCAGCTACATCCGATTCCATTAGCCAAGAAGCCAATCCCGCC
CAGAACCGAACGAACGCCTCGAACGCGAACTCTAGCTCGAGTCCCGGCCC
GACCAGCGATCCCGCTGCAGGCGATGTAATTGAGGTCACCTCCTCGACGC
CCTCGGTAGCGGGCAGCAGTCGTGGGGCGGTGCGCGCCTCCAACGGCAAG
CGGGGCAAGAACAGGCGTGGCAAGCAGCAGCGGACCAACCAGCAGCAGCG
GAAACAACAGCCAGCGATCACCAAATTGCTGACGCCCTCCGGCGAGATCG
TCGACGAGGACTTCGACGAGGACGAATGGTACATTGTGGAGAAGGAAGAC
GAGGAGGACGACTCCCTGCCACGCAGCGACTCCGAGGAGGAGCTCTCCGT
GGTGGAGGTGTCGCAGCCGCGGGGCGGTTCCAACAACGCCTCCTCTCCAA
TGGTGACCGTGGCCACTGGCACGGCGTTCAACTGCCGCCGCCGGCAGGGC
GTCAACTCGTGTTCCCTGTACAGTGGGCCCCGGCCGCAGCAGCAACGCAA
CTATCTGCAACGCTCGCGCGTCTCCCGGCCGCTGAGCATCAGCACCCTCA
GCCCGCCCAGAAGTGTGCCCGCCCTGGGGGCCGGCGATCATGACACGCTG
ACCCAGTCGCTGTACGTGGCCTCGCCGAGCGGCAGCGACCAGGGTCAGGA
TCACGGCCAGGGTGCTAACGTGCTGATGGAGGAGTCCTGCATGTCCGTTT
ATCATAGTATTAGGTCCACCCAGGAGGGAACCGATAGTTTTGTTAATCTT
GATCTCGGGGTGTCGACGGAGGTGCCGCAGCAGCGGGAGGAGCCCGAGCC
GGAGGCTGAGCCGCAGGATCAGCGCCAGGCTCTCCAGGAGCAGCAACGTG
CCCCCAACGCTCGCTTCGATAGCCATGCGGCCGTACAGTTGAAGCAGCAG
ACGCTGGCTCGTCAGAGTCAGAAGAGCAAGAACAAGAAGGAGCACCAGCA
GCTCTGCCGCAGTGCCATCAAGCGGGCCAACAAGGTGCGCGACTTCCAGG
CCAAGGCCAACCGCCCGCGCCGCTCGGAGATGCAGCACTGCAAGCTGGTC
AGCGGCGCCAACAACAACCGCAGCAAGTGCTGCTACTAGGCGGCCACCAC
CCACGCCACCCACAACCACCCAACACCAACACCACCACCATGCCTCCAGC
GCTCGAGGAGCCGACGGAGCCGTAGGAGGAGCATTACAATCATGGCAGGC
GACGCGATTTTAATTAGTATTTTAACCTTACCCCCAGATGAAACGAGAGA
AAATTCGCAAAAAAAGGAAAAATGCCACAAAAATATCAAAAATCTAGCAG
CTACAAGAAACGCATATGTTTAATTAACTAAACTTAACAAATACTTGTGT
AAAAACGAAAAAGAAAAGCAACAAAAAAATTTAACTATCTGTGTAAATGC
GTAGGTTTTAACGTTTGCCGTTTCAATTTCAAAACTTATATGAAAAATAC
CAAAAAAAAAAAAAAAAA

GH28550.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11347.e 2885 CG11347.e 360..2422 1..2063 10315 100 Plus
CG11347.b 2678 CG11347.b 153..2215 1..2063 10315 100 Plus
CG11347.a 2093 CG11347.a 17..1541 1..1525 7625 100 Plus
CG11347.a 2093 CG11347.a 1565..2093 1523..2051 2645 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 21:31:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4417206..4417884 220..898 3365 99.7 Plus
chr3L 24539361 chr3L 4419124..4419652 1523..2051 2645 100 Plus
chr3L 24539361 chr3L 4418166..4418558 897..1289 1905 99 Plus
chr3L 24539361 chr3L 4418814..4419049 1289..1524 1180 100 Plus
chr3L 24539361 chr3L 4406595..4406817 1..223 1100 99.6 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:12:12 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 21:31:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4417816..4418494 220..898 3380 99.9 Plus
3L 28110227 3L 4419738..4420278 1523..2063 2705 100 Plus
3L 28110227 3L 4418780..4419172 897..1289 1965 100 Plus
3L 28110227 3L 4419428..4419663 1289..1524 1180 100 Plus
3L 28110227 3L 4407162..4407384 1..223 1115 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4417816..4418494 220..898 3380 99.8 Plus
3L 28103327 3L 4419738..4420278 1523..2063 2705 100 Plus
3L 28103327 3L 4418780..4419172 897..1289 1965 100 Plus
3L 28103327 3L 4419428..4419663 1289..1524 1180 100 Plus
3L 28103327 3L 4407162..4407384 1..223 1115 100 Plus
Blast to na_te.dros performed 2019-03-15 21:31:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tv1 6868 Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). 5960..6086 1926..2051 145 60.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1503..1598 733..829 131 63.6 Plus
HeT-A 6083 HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). 5003..5123 255..371 127 59.8 Plus

GH28550.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 21:32:16 Download gff for GH28550.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4418168..4418558 899..1289 98 -> Plus
chr3L 4418815..4419049 1290..1524 100 -> Plus
chr3L 4406595..4406817 1..223 99 -> Plus
chr3L 4417210..4417884 224..898 99 -> Plus
chr3L 4419126..4419652 1525..2051 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:42:28 Download gff for GH28550.complete
Subject Subject Range Query Range Percent Splice Strand
CG11347-RA 1..1164 526..1689 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:51:45 Download gff for GH28550.complete
Subject Subject Range Query Range Percent Splice Strand
CG11347-RA 1..1164 526..1689 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 05:51:21 Download gff for GH28550.complete
Subject Subject Range Query Range Percent Splice Strand
DOR-RB 1..1164 526..1689 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:44:21 Download gff for GH28550.complete
Subject Subject Range Query Range Percent Splice Strand
CG11347-RA 1..1164 526..1689 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:56:24 Download gff for GH28550.complete
Subject Subject Range Query Range Percent Splice Strand
DOR-RB 1..1164 526..1689 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:42:28 Download gff for GH28550.complete
Subject Subject Range Query Range Percent Splice Strand
CG11347-RD 18..2068 1..2051 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:51:45 Download gff for GH28550.complete
Subject Subject Range Query Range Percent Splice Strand
CG11347-RD 18..2068 1..2051 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:51:21 Download gff for GH28550.complete
Subject Subject Range Query Range Percent Splice Strand
DOR-RD 18..2068 1..2051 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:44:22 Download gff for GH28550.complete
Subject Subject Range Query Range Percent Splice Strand
CG11347-RD 18..2068 1..2051 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:24 Download gff for GH28550.complete
Subject Subject Range Query Range Percent Splice Strand
DOR-RD 18..2068 1..2051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:32:16 Download gff for GH28550.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4407162..4407384 1..223 100 -> Plus
3L 4417820..4418494 224..898 100 -> Plus
3L 4418782..4419172 899..1289 100 -> Plus
3L 4419429..4419663 1290..1524 100 -> Plus
3L 4419740..4420266 1525..2051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:32:16 Download gff for GH28550.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4407162..4407384 1..223 100 -> Plus
3L 4417820..4418494 224..898 100 -> Plus
3L 4418782..4419172 899..1289 100 -> Plus
3L 4419429..4419663 1290..1524 100 -> Plus
3L 4419740..4420266 1525..2051 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 21:32:16 Download gff for GH28550.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4407162..4407384 1..223 100 -> Plus
3L 4417820..4418494 224..898 100 -> Plus
3L 4418782..4419172 899..1289 100 -> Plus
3L 4419429..4419663 1290..1524 100 -> Plus
3L 4419740..4420266 1525..2051 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:51:21 Download gff for GH28550.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4418782..4419172 899..1289 100 -> Plus
arm_3L 4419429..4419663 1290..1524 100 -> Plus
arm_3L 4407162..4407384 1..223 100 -> Plus
arm_3L 4417820..4418494 224..898 100 -> Plus
arm_3L 4419740..4420266 1525..2051 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:16:43 Download gff for GH28550.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4407162..4407384 1..223 100 -> Plus
3L 4417820..4418494 224..898 100 -> Plus
3L 4418782..4419172 899..1289 100 -> Plus
3L 4419429..4419663 1290..1524 100 -> Plus
3L 4419740..4420266 1525..2051 100   Plus

GH28550.pep Sequence

Translation from 525 to 1688

> GH28550.pep
MLSSLASYLFGSATSDSISQEANPAQNRTNASNANSSSSPGPTSDPAAGD
VIEVTSSTPSVAGSSRGAVRASNGKRGKNRRGKQQRTNQQQRKQQPAITK
LLTPSGEIVDEDFDEDEWYIVEKEDEEDDSLPRSDSEEELSVVEVSQPRG
GSNNASSPMVTVATGTAFNCRRRQGVNSCSLYSGPRPQQQRNYLQRSRVS
RPLSISTLSPPRSVPALGAGDHDTLTQSLYVASPSGSDQGQDHGQGANVL
MEESCMSVYHSIRSTQEGTDSFVNLDLGVSTEVPQQREEPEPEAEPQDQR
QALQEQQRAPNARFDSHAAVQLKQQTLARQSQKSKNKKEHQQLCRSAIKR
ANKVRDFQAKANRPRRSEMQHCKLVSGANNNRSKCCY*

GH28550.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25070-PA 387 GF25070-PA 1..387 1..387 1326 75.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15227-PA 392 GG15227-PA 1..392 1..387 1631 88.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15680-PA 462 GH15680-PA 1..462 1..386 780 46.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:31:49
Subject Length Description Subject Range Query Range Score Percent Strand
DOR-PE 387 CG11347-PE 1..387 1..387 1980 100 Plus
DOR-PA 387 CG11347-PA 1..387 1..387 1980 100 Plus
DOR-PB 387 CG11347-PB 1..387 1..387 1980 100 Plus
DOR-PD 387 CG11347-PD 1..387 1..387 1980 100 Plus
DOR-PH 417 CG11347-PH 1..417 1..387 1929 92.6 Plus
DOR-PG 417 CG11347-PG 1..417 1..387 1929 92.6 Plus
DOR-PC 273 CG11347-PC 8..273 122..387 1354 98.5 Plus
DOR-PF 229 CG11347-PF 1..229 159..387 1188 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:47:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12726-PA 414 GI12726-PA 1..414 2..386 831 50.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:47:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17895-PA 429 GL17895-PA 1..429 1..387 1051 61.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10936-PA 421 GA10936-PA 1..421 1..387 1091 64.1 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14658-PA 387 GM14658-PA 1..387 1..387 1931 95.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:47:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13843-PA 387 GD13843-PA 1..387 1..387 1968 97.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:47:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12713-PA 422 GJ12713-PA 1..422 1..386 877 53.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16581-PA 300 GK16581-PA 169..300 256..387 485 73 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:47:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21446-PA 376 GE21446-PA 1..376 1..387 1582 83 Plus

GH28550.hyp Sequence

Translation from 525 to 1688

> GH28550.hyp
MLSSLASYLFGSATSDSISQEANPAQNRTNASNANSSSSPGPTSDPAAGD
VIEVTSSTPSVAGSSRGAVRASNGKRGKNRRGKQQRTNQQQRKQQPAITK
LLTPSGEIVDEDFDEDEWYIVEKEDEEDDSLPRSDSEEELSVVEVSQPRG
GSNNASSPMVTVATGTAFNCRRRQGVNSCSLYSGPRPQQQRNYLQRSRVS
RPLSISTLSPPRSVPALGAGDHDTLTQSLYVASPSGSDQGQDHGQGANVL
MEESCMSVYHSIRSTQEGTDSFVNLDLGVSTEVPQQREEPEPEAEPQDQR
QALQEQQRAPNARFDSHAAVQLKQQTLARQSQKSKNKKEHQQLCRSAIKR
ANKVRDFQAKANRPRRSEMQHCKLVSGANNNRSKCCY*

GH28550.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:49:07
Subject Length Description Subject Range Query Range Score Percent Strand
DOR-PE 387 CG11347-PE 1..387 1..387 1980 100 Plus
DOR-PA 387 CG11347-PA 1..387 1..387 1980 100 Plus
DOR-PB 387 CG11347-PB 1..387 1..387 1980 100 Plus
DOR-PD 387 CG11347-PD 1..387 1..387 1980 100 Plus
DOR-PH 417 CG11347-PH 1..417 1..387 1929 92.6 Plus