BDGP Sequence Production Resources |
Search the DGRC for GH28550
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 285 |
Well: | 50 |
Vector: | pOT2 |
Associated Gene/Transcript | DOR-RA |
Protein status: | GH28550.pep: gold |
Preliminary Size: | 2055 |
Sequenced Size: | 2068 |
Gene | Date | Evidence |
---|---|---|
CG11347 | 2001-01-01 | Release 2 assignment |
CG11347 | 2002-05-15 | Blastp of sequenced clone |
CG11347 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11347 | 2008-04-29 | Release 5.5 accounting |
CG11347 | 2008-08-15 | Release 5.9 accounting |
CG11347 | 2008-12-18 | 5.12 accounting |
2068 bp (2068 high quality bases) assembled on 2002-05-15
GenBank Submission: AY118829
> GH28550.complete TCGTTGTTGCTAGCATACGTCACGGAGTTCCTGTAGCGCTGCTCTTCTCC GCACTCTCACCCCCGTCAGTTAAGCAAAAACGGAAGTAATCAGCACAAAA AACAATAAGCACGCCAATTAAAAAACATTTCGAAAACTGTGTAAAAAGCC TTGCTGGTGCAAATTATTGCAGAGAATACGGGTAGATTCCGACACCGATC GATCAATAAACTCCGCGCAGCAACTTCTACGCTACGAAGAAAGAGAAACA GAACAAGACAAGAGAACAGCGTACAAACAAGTAACATAAACAAATACAAA AAGAATTAAATAAAAGACTGAGCAACGTTCAAGCAAATCCAAGGAACAAA ACCAACAGCAACATAAGCAATCTCCCACAAATCGTCTCTCTAACTGTGAA ACTAGGCCCACAAAAATCCGAGTGGAAAAGCGCATCTTTGATCTCAGCAA CCCCGCAACCAAGAAGCAATAAAAAGAAAGAGCCAGCGCACTTTACCGCC GGATCAGCCGCATTAACCTTGTATAATGTTAAGCAGCCTCGCCTCGTATC TCTTTGGATCAGCTACATCCGATTCCATTAGCCAAGAAGCCAATCCCGCC CAGAACCGAACGAACGCCTCGAACGCGAACTCTAGCTCGAGTCCCGGCCC GACCAGCGATCCCGCTGCAGGCGATGTAATTGAGGTCACCTCCTCGACGC CCTCGGTAGCGGGCAGCAGTCGTGGGGCGGTGCGCGCCTCCAACGGCAAG CGGGGCAAGAACAGGCGTGGCAAGCAGCAGCGGACCAACCAGCAGCAGCG GAAACAACAGCCAGCGATCACCAAATTGCTGACGCCCTCCGGCGAGATCG TCGACGAGGACTTCGACGAGGACGAATGGTACATTGTGGAGAAGGAAGAC GAGGAGGACGACTCCCTGCCACGCAGCGACTCCGAGGAGGAGCTCTCCGT GGTGGAGGTGTCGCAGCCGCGGGGCGGTTCCAACAACGCCTCCTCTCCAA TGGTGACCGTGGCCACTGGCACGGCGTTCAACTGCCGCCGCCGGCAGGGC GTCAACTCGTGTTCCCTGTACAGTGGGCCCCGGCCGCAGCAGCAACGCAA CTATCTGCAACGCTCGCGCGTCTCCCGGCCGCTGAGCATCAGCACCCTCA GCCCGCCCAGAAGTGTGCCCGCCCTGGGGGCCGGCGATCATGACACGCTG ACCCAGTCGCTGTACGTGGCCTCGCCGAGCGGCAGCGACCAGGGTCAGGA TCACGGCCAGGGTGCTAACGTGCTGATGGAGGAGTCCTGCATGTCCGTTT ATCATAGTATTAGGTCCACCCAGGAGGGAACCGATAGTTTTGTTAATCTT GATCTCGGGGTGTCGACGGAGGTGCCGCAGCAGCGGGAGGAGCCCGAGCC GGAGGCTGAGCCGCAGGATCAGCGCCAGGCTCTCCAGGAGCAGCAACGTG CCCCCAACGCTCGCTTCGATAGCCATGCGGCCGTACAGTTGAAGCAGCAG ACGCTGGCTCGTCAGAGTCAGAAGAGCAAGAACAAGAAGGAGCACCAGCA GCTCTGCCGCAGTGCCATCAAGCGGGCCAACAAGGTGCGCGACTTCCAGG CCAAGGCCAACCGCCCGCGCCGCTCGGAGATGCAGCACTGCAAGCTGGTC AGCGGCGCCAACAACAACCGCAGCAAGTGCTGCTACTAGGCGGCCACCAC CCACGCCACCCACAACCACCCAACACCAACACCACCACCATGCCTCCAGC GCTCGAGGAGCCGACGGAGCCGTAGGAGGAGCATTACAATCATGGCAGGC GACGCGATTTTAATTAGTATTTTAACCTTACCCCCAGATGAAACGAGAGA AAATTCGCAAAAAAAGGAAAAATGCCACAAAAATATCAAAAATCTAGCAG CTACAAGAAACGCATATGTTTAATTAACTAAACTTAACAAATACTTGTGT AAAAACGAAAAAGAAAAGCAACAAAAAAATTTAACTATCTGTGTAAATGC GTAGGTTTTAACGTTTGCCGTTTCAATTTCAAAACTTATATGAAAAATAC CAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11347.e | 2885 | CG11347.e | 360..2422 | 1..2063 | 10315 | 100 | Plus |
CG11347.b | 2678 | CG11347.b | 153..2215 | 1..2063 | 10315 | 100 | Plus |
CG11347.a | 2093 | CG11347.a | 17..1541 | 1..1525 | 7625 | 100 | Plus |
CG11347.a | 2093 | CG11347.a | 1565..2093 | 1523..2051 | 2645 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 4417206..4417884 | 220..898 | 3365 | 99.7 | Plus |
chr3L | 24539361 | chr3L | 4419124..4419652 | 1523..2051 | 2645 | 100 | Plus |
chr3L | 24539361 | chr3L | 4418166..4418558 | 897..1289 | 1905 | 99 | Plus |
chr3L | 24539361 | chr3L | 4418814..4419049 | 1289..1524 | 1180 | 100 | Plus |
chr3L | 24539361 | chr3L | 4406595..4406817 | 1..223 | 1100 | 99.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 4417816..4418494 | 220..898 | 3380 | 99.9 | Plus |
3L | 28110227 | 3L | 4419738..4420278 | 1523..2063 | 2705 | 100 | Plus |
3L | 28110227 | 3L | 4418780..4419172 | 897..1289 | 1965 | 100 | Plus |
3L | 28110227 | 3L | 4419428..4419663 | 1289..1524 | 1180 | 100 | Plus |
3L | 28110227 | 3L | 4407162..4407384 | 1..223 | 1115 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 4417816..4418494 | 220..898 | 3380 | 99.8 | Plus |
3L | 28103327 | 3L | 4419738..4420278 | 1523..2063 | 2705 | 100 | Plus |
3L | 28103327 | 3L | 4418780..4419172 | 897..1289 | 1965 | 100 | Plus |
3L | 28103327 | 3L | 4419428..4419663 | 1289..1524 | 1180 | 100 | Plus |
3L | 28103327 | 3L | 4407162..4407384 | 1..223 | 1115 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Tv1 | 6868 | Dvir\Tv1 6868bp Derived from AF056940 (Rel. 62, Last updated, Version 4). | 5960..6086 | 1926..2051 | 145 | 60.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1503..1598 | 733..829 | 131 | 63.6 | Plus |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 5003..5123 | 255..371 | 127 | 59.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 4418168..4418558 | 899..1289 | 98 | -> | Plus |
chr3L | 4418815..4419049 | 1290..1524 | 100 | -> | Plus |
chr3L | 4406595..4406817 | 1..223 | 99 | -> | Plus |
chr3L | 4417210..4417884 | 224..898 | 99 | -> | Plus |
chr3L | 4419126..4419652 | 1525..2051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11347-RA | 1..1164 | 526..1689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11347-RA | 1..1164 | 526..1689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DOR-RB | 1..1164 | 526..1689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11347-RA | 1..1164 | 526..1689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DOR-RB | 1..1164 | 526..1689 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11347-RD | 18..2068 | 1..2051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11347-RD | 18..2068 | 1..2051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DOR-RD | 18..2068 | 1..2051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11347-RD | 18..2068 | 1..2051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
DOR-RD | 18..2068 | 1..2051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4407162..4407384 | 1..223 | 100 | -> | Plus |
3L | 4417820..4418494 | 224..898 | 100 | -> | Plus |
3L | 4418782..4419172 | 899..1289 | 100 | -> | Plus |
3L | 4419429..4419663 | 1290..1524 | 100 | -> | Plus |
3L | 4419740..4420266 | 1525..2051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4407162..4407384 | 1..223 | 100 | -> | Plus |
3L | 4417820..4418494 | 224..898 | 100 | -> | Plus |
3L | 4418782..4419172 | 899..1289 | 100 | -> | Plus |
3L | 4419429..4419663 | 1290..1524 | 100 | -> | Plus |
3L | 4419740..4420266 | 1525..2051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4407162..4407384 | 1..223 | 100 | -> | Plus |
3L | 4417820..4418494 | 224..898 | 100 | -> | Plus |
3L | 4418782..4419172 | 899..1289 | 100 | -> | Plus |
3L | 4419429..4419663 | 1290..1524 | 100 | -> | Plus |
3L | 4419740..4420266 | 1525..2051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 4418782..4419172 | 899..1289 | 100 | -> | Plus |
arm_3L | 4419429..4419663 | 1290..1524 | 100 | -> | Plus |
arm_3L | 4407162..4407384 | 1..223 | 100 | -> | Plus |
arm_3L | 4417820..4418494 | 224..898 | 100 | -> | Plus |
arm_3L | 4419740..4420266 | 1525..2051 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4407162..4407384 | 1..223 | 100 | -> | Plus |
3L | 4417820..4418494 | 224..898 | 100 | -> | Plus |
3L | 4418782..4419172 | 899..1289 | 100 | -> | Plus |
3L | 4419429..4419663 | 1290..1524 | 100 | -> | Plus |
3L | 4419740..4420266 | 1525..2051 | 100 | Plus |
Translation from 525 to 1688
> GH28550.pep MLSSLASYLFGSATSDSISQEANPAQNRTNASNANSSSSPGPTSDPAAGD VIEVTSSTPSVAGSSRGAVRASNGKRGKNRRGKQQRTNQQQRKQQPAITK LLTPSGEIVDEDFDEDEWYIVEKEDEEDDSLPRSDSEEELSVVEVSQPRG GSNNASSPMVTVATGTAFNCRRRQGVNSCSLYSGPRPQQQRNYLQRSRVS RPLSISTLSPPRSVPALGAGDHDTLTQSLYVASPSGSDQGQDHGQGANVL MEESCMSVYHSIRSTQEGTDSFVNLDLGVSTEVPQQREEPEPEAEPQDQR QALQEQQRAPNARFDSHAAVQLKQQTLARQSQKSKNKKEHQQLCRSAIKR ANKVRDFQAKANRPRRSEMQHCKLVSGANNNRSKCCY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF25070-PA | 387 | GF25070-PA | 1..387 | 1..387 | 1326 | 75.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG15227-PA | 392 | GG15227-PA | 1..392 | 1..387 | 1631 | 88.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15680-PA | 462 | GH15680-PA | 1..462 | 1..386 | 780 | 46.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
DOR-PE | 387 | CG11347-PE | 1..387 | 1..387 | 1980 | 100 | Plus |
DOR-PA | 387 | CG11347-PA | 1..387 | 1..387 | 1980 | 100 | Plus |
DOR-PB | 387 | CG11347-PB | 1..387 | 1..387 | 1980 | 100 | Plus |
DOR-PD | 387 | CG11347-PD | 1..387 | 1..387 | 1980 | 100 | Plus |
DOR-PH | 417 | CG11347-PH | 1..417 | 1..387 | 1929 | 92.6 | Plus |
DOR-PG | 417 | CG11347-PG | 1..417 | 1..387 | 1929 | 92.6 | Plus |
DOR-PC | 273 | CG11347-PC | 8..273 | 122..387 | 1354 | 98.5 | Plus |
DOR-PF | 229 | CG11347-PF | 1..229 | 159..387 | 1188 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12726-PA | 414 | GI12726-PA | 1..414 | 2..386 | 831 | 50.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17895-PA | 429 | GL17895-PA | 1..429 | 1..387 | 1051 | 61.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10936-PA | 421 | GA10936-PA | 1..421 | 1..387 | 1091 | 64.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14658-PA | 387 | GM14658-PA | 1..387 | 1..387 | 1931 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13843-PA | 387 | GD13843-PA | 1..387 | 1..387 | 1968 | 97.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12713-PA | 422 | GJ12713-PA | 1..422 | 1..386 | 877 | 53.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16581-PA | 300 | GK16581-PA | 169..300 | 256..387 | 485 | 73 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21446-PA | 376 | GE21446-PA | 1..376 | 1..387 | 1582 | 83 | Plus |
Translation from 525 to 1688
> GH28550.hyp MLSSLASYLFGSATSDSISQEANPAQNRTNASNANSSSSPGPTSDPAAGD VIEVTSSTPSVAGSSRGAVRASNGKRGKNRRGKQQRTNQQQRKQQPAITK LLTPSGEIVDEDFDEDEWYIVEKEDEEDDSLPRSDSEEELSVVEVSQPRG GSNNASSPMVTVATGTAFNCRRRQGVNSCSLYSGPRPQQQRNYLQRSRVS RPLSISTLSPPRSVPALGAGDHDTLTQSLYVASPSGSDQGQDHGQGANVL MEESCMSVYHSIRSTQEGTDSFVNLDLGVSTEVPQQREEPEPEAEPQDQR QALQEQQRAPNARFDSHAAVQLKQQTLARQSQKSKNKKEHQQLCRSAIKR ANKVRDFQAKANRPRRSEMQHCKLVSGANNNRSKCCY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
DOR-PE | 387 | CG11347-PE | 1..387 | 1..387 | 1980 | 100 | Plus |
DOR-PA | 387 | CG11347-PA | 1..387 | 1..387 | 1980 | 100 | Plus |
DOR-PB | 387 | CG11347-PB | 1..387 | 1..387 | 1980 | 100 | Plus |
DOR-PD | 387 | CG11347-PD | 1..387 | 1..387 | 1980 | 100 | Plus |
DOR-PH | 417 | CG11347-PH | 1..417 | 1..387 | 1929 | 92.6 | Plus |