Clone GH28577 Report

Search the DGRC for GH28577

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:285
Well:77
Vector:pOT2
Associated Gene/Transcriptigl-RB
Protein status:GH28577.pep: gold
Preliminary Size:1987
Sequenced Size:1910

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18285 2001-01-01 Release 2 assignment
CG18285 2001-09-19 Blastp of sequenced clone
CG18285 2003-01-01 Sim4 clustering to Release 3
igl 2008-04-29 Release 5.5 accounting
igl 2008-08-15 Release 5.9 accounting
igl 2008-12-18 5.12 accounting

Clone Sequence Records

GH28577.complete Sequence

1910 bp (1910 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060354

> GH28577.complete
TTCGGTTCGATAGGTTGCCCCAAAGAGAGAAAGTCCAAGCGGAAGTCCTT
TGAGCCCAGCAAAAGGGAAAGTGCGCGCGAATTTAAATATTAATAGAATA
AAACAAACTATCGGTTTGTACGTGTTTTGTGCTGAGCCTTTCTGCAGAAG
AGCCAAGCAAAAGCCGCAACAAAAATCCAAGCCGTCTTTCGAGGCCACAA
AGTGAGAGAAACCATGAAAAAATCGGAAACCAAAACTGCGACCAACAACG
GCAGTGCCGCCGGAGCAGCTCCATCGGCAGCAGCCGCCGAGGCAGCCGCA
TCCGCAGAGCCAACCAAAGCCGAGCTAGAGGCTGAATTCGATCCCAACGA
CAAGGATCTGTGCCATGCTGCATTGAAGATTCAGTCCACTTTCCGTGGTC
ATTTGGCACGCAAGCTGGTGAACAAGGATGCGCCCGAGGACGAGGACATT
CAGGAGATAACCAAGAAGGTGGCCGAGGAGTTGGACATAGATTTAACCGA
TCCCGAGCTTAACAAGGCTGCTACCAAAATTCAGGCCTCGTTCCGGGGCC
ACAAGACCCGCAAGGATGCCAATCCCGAGTAAGGAGCTCACCACTTGAAT
TTTCATTGCCCTCGGTGGGCTAGTCACAGATGATGAAGCTAACTTAATGC
TTACGCAAGTGAATAAAATTATTGGTAAATTGTAAATGTGTAAAAGGCCA
ATCGAGATGAGGGCACACAATTGTAAACTTTTTAGTGAATATGCTTTAGC
CGGCATGGCGAACCCAAATGATTCTCATAATTATTAAATAAATTAAGTCG
AGGGCAAAGTTACATTTAGTTTGCAAAGCTTTAATAAATGAATAGTAAAA
CCACATTATGCGAATGATGATTCGGAGTTACGCGACATTTACAGATACAT
TATTGCGGCTTGTCTTGTTCTATTACATACCCTTAGAGTCGTAAATTGAT
AAATTTGTATTAGTTAATATTTAATTATATTACATTTCGTTTTTGGACTT
TGCTATTAAACCCAAGACCGTAACTAAACCAAAAATAAAGTGAACTAACG
TTAAATTGTCAAAGAAAAACCTAATGTTACAAAATAATAAATAAAAGGCA
CGATGTTCCATAAACTTTATTGTAGGGAAATGAGAAACCAAACAAAAGAC
AAATGCAAGGAAACTGCTGAACAAATTTTTGGGAAATCATTTCCATTTTG
TCGGGCCAATGCCAAAAGTAAAAAATTAATTGTACCTACGAGCGTATGAA
TATGAATTAGAAACCAAAGGAACTCAATGTTGTTTCAAATTAAGGCAAAT
TAGGGGTACCCAAGCAACATGATGCAGCTTCGAGTCGTCAACTCAACAAT
TTTTCAGCCCTCGGGCTCTATATATAAACTGAAAAGTCAATGAACATGAA
GATAACTAATCTGGTGGCACAATTTTCGTTTTTCTACCAAGTGTATTACA
ATATTTGTCTACTTAACAATTGATCCTCGAGTGGGAAACTGAAAAACACA
CATACATATATATATACCTATACAGATGCAAAGACAGGTATTAGACCGAG
TTGAATTGGAAAATATTTTTTTTCGGCCACAGCTGAGAAAATTGTTACCA
TGTGGCAACGGAAGCCAATAATGAAATATTTAAAATTCAAATCAATTAAC
TACAAAGAATTAATAACAAGCTAATGAACATAATTGAAATTATATTAGAG
ATCAAAGTCAAATTCAAAAAAACATTGCATAAAATTATTACATTTAAAAA
GCAAATGGGTAAAACCAATTCTATGTGGATAAATGAAAAGAAAAAACCAG
AATATGAAAGCAAACCATATACAAGCCGAACAAACAAAGAATGTCCCAAC
TAAATTTTAATTGAGTAATAAAAATAAATACAATAAAGATGCAAAAAAAA
AAAAAAAAAA

GH28577.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
igl-RB 1960 igl-RB 28..1921 1..1894 9470 100 Plus
igl-RA 2620 igl-RA 842..2581 155..1894 8700 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11075954..11077489 355..1892 7550 99.5 Plus
chr2R 21145070 chr2R 11067710..11067909 156..355 1000 100 Plus
chr2R 21145070 chr2R 11052130..11052286 1..157 785 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:12:17 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15188755..15190294 355..1894 7700 100 Plus
2R 25286936 2R 15180511..15180710 156..355 1000 100 Plus
2R 25286936 2R 15164944..15165100 1..157 785 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15189954..15191493 355..1894 7700 100 Plus
2R 25260384 2R 15181710..15181909 156..355 1000 100 Plus
2R 25260384 2R 15166143..15166299 1..157 785 100 Plus
Blast to na_te.dros performed 2019-03-15 16:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1194..1530 1494..1810 184 57.5 Plus
McClintock 6450 McClintock McCLINTOCK 6450bp 1093..1350 1617..1879 176 57.2 Plus
copia 5143 copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). 964..1213 1641..1889 157 56.4 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 870..1030 1015..1175 155 60 Plus
gypsy12 10218 gypsy12 GYPSY12 10218bp 1836..1939 1724..1623 145 62.5 Minus
gypsy12 10218 gypsy12 GYPSY12 10218bp 9718..9821 1724..1623 145 62.5 Minus
invader4 3105 invader4 INVADER4 3105bp 1514..1617 1778..1878 134 62.9 Plus
Dbuz\Kepler 722 Dbuz\Kepler KEPLER 722bp 441..512 1492..1565 130 67.6 Plus
Dbuz\Kepler 722 Dbuz\Kepler KEPLER 722bp 374..466 1445..1541 124 61.9 Plus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 807..958 1008..1152 123 56.9 Plus
Dbuz\Kepler 722 Dbuz\Kepler KEPLER 722bp 451..496 1492..1537 122 73.9 Plus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 1058..1096 1887..1849 122 85 Minus
McClintock 6450 McClintock McCLINTOCK 6450bp 5786..5855 1617..1687 118 64.8 Plus
Dbuz\BuT2 2775 Dbuz\BuT2 BUT2 2775bp 1311..1420 1499..1608 117 59.8 Plus
Dbuz\Kepler 722 Dbuz\Kepler KEPLER 722bp 419..492 1486..1558 115 63.5 Plus

GH28577.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:55:35 Download gff for GH28577.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11052130..11052286 1..157 100 -> Plus
chr2R 11067712..11067909 158..355 100 -> Plus
chr2R 11075955..11077489 356..1892 96   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:45:21 Download gff for GH28577.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RA 289..723 147..582 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:04:45 Download gff for GH28577.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RA 289..723 147..582 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:24:27 Download gff for GH28577.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RA 289..723 147..582 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:35:24 Download gff for GH28577.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RA 289..723 147..582 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:21:02 Download gff for GH28577.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RA 289..723 147..582 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:45:20 Download gff for GH28577.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RB 28..1919 1..1892 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:04:45 Download gff for GH28577.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RB 28..1919 1..1892 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:24:27 Download gff for GH28577.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RB 25..1916 1..1892 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:35:24 Download gff for GH28577.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RB 28..1919 1..1892 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:21:02 Download gff for GH28577.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RB 25..1916 1..1892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:55:35 Download gff for GH28577.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15164944..15165100 1..157 100 -> Plus
2R 15180513..15180710 158..355 100 -> Plus
2R 15188756..15190292 356..1892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:55:35 Download gff for GH28577.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15164944..15165100 1..157 100 -> Plus
2R 15180513..15180710 158..355 100 -> Plus
2R 15188756..15190292 356..1892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:55:35 Download gff for GH28577.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15164944..15165100 1..157 100 -> Plus
2R 15180513..15180710 158..355 100 -> Plus
2R 15188756..15190292 356..1892 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:24:27 Download gff for GH28577.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11052449..11052605 1..157 100 -> Plus
arm_2R 11068018..11068215 158..355 100 -> Plus
arm_2R 11076261..11077797 356..1892 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:12:24 Download gff for GH28577.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15166143..15166299 1..157 100 -> Plus
2R 15181712..15181909 158..355 100 -> Plus
2R 15189955..15191491 356..1892 100   Plus

GH28577.pep Sequence

Translation from 213 to 581

> GH28577.pep
MKKSETKTATNNGSAAGAAPSAAAAEAAASAEPTKAELEAEFDPNDKDLC
HAALKIQSTFRGHLARKLVNKDAPEDEDIQEITKKVAEELDIDLTDPELN
KAATKIQASFRGHKTRKDANPE*

GH28577.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:48:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12313-PA 237 GF12313-PA 116..237 1..122 519 92.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20500-PA 240 GG20500-PA 119..240 1..122 621 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:48:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21112-PA 252 GH21112-PA 126..252 1..122 462 84.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
igl-PC 122 CG18285-PC 1..122 1..122 613 100 Plus
igl-PB 122 CG18285-PB 1..122 1..122 613 100 Plus
igl-PA 240 CG18285-PA 119..240 1..122 613 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI18717-PA 242 GI18717-PA 122..242 1..122 482 86.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:48:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL10612-PA 240 GL10612-PA 121..240 1..122 498 85.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:48:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14874-PA 240 GA14874-PA 121..240 1..122 498 85.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21592-PA 240 GM21592-PA 119..240 1..122 611 99.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11100-PA 240 GD11100-PA 119..240 1..122 621 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21734-PA 239 GJ21734-PA 118..239 1..122 505 87.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19703-PA 246 GK19703-PA 126..246 1..122 471 83.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:48:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13633-PA 240 GE13633-PA 119..240 1..122 617 99.2 Plus

GH28577.hyp Sequence

Translation from 213 to 581

> GH28577.hyp
MKKSETKTATNNGSAAGAAPSAAAAEAAASAEPTKAELEAEFDPNDKDLC
HAALKIQSTFRGHLARKLVNKDAPEDEDIQEITKKVAEELDIDLTDPELN
KAATKIQASFRGHKTRKDANPE*

GH28577.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:49:33
Subject Length Description Subject Range Query Range Score Percent Strand
igl-PC 122 CG18285-PC 1..122 1..122 613 100 Plus
igl-PB 122 CG18285-PB 1..122 1..122 613 100 Plus
igl-PA 240 CG18285-PA 119..240 1..122 613 100 Plus