Clone GH28578 Report

Search the DGRC for GH28578

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:285
Well:78
Vector:pOT2
Associated Gene/TranscriptRh5-RA
Protein status:GH28578.pep: gold
Preliminary Size:1513
Sequenced Size:1411

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG5279 2001-01-01 Release 2 assignment
CG5279 2001-11-09 Blastp of sequenced clone
CG5279 2003-01-01 Sim4 clustering to Release 3
Rh5 2008-04-29 Release 5.5 accounting
Rh5 2008-08-15 Release 5.9 accounting
Rh5 2008-12-18 5.12 accounting

Clone Sequence Records

GH28578.complete Sequence

1411 bp (1411 high quality bases) assembled on 2001-11-09

GenBank Submission: AY069237

> GH28578.complete
CGGAGGCCAGAATGTCGACCTGCAAAGGAAACTAGATTTTGGAGCGGATC
AAGCAGTATGCACATCAACGGCCCAAGTGGGCCACAGGCCTATGTGAACG
ATAGCTTAGGAGATGGCAGCGTCTTTCCAATGGGACATGGATATCCGGCG
GAGTACCAGCACATGGTGCACGCCCACTGGCGGGGATTCCGTGAGGCACC
TATCTACTATCACGCCGGTTTCTACATTGCCTTTATCGTCCTCATGCTGT
CGAGTATCTTTGGAAATGGACTGGTCATCTGGATATTCTCGACTTCGAAA
TCCCTGCGTACTCCATCTAACCTATTGATTCTCAACCTGGCCATTTTCGA
TCTGTTCATGTGCACCAATATGCCGCATTATCTTATCAACGCCACAGTTG
GCTATATAGTGGGCGGAGATCTGGGCTGCGATATATACGCTTTGAACGGA
GGCATCTCCGGGATGGGAGCCTCCATAACGAATGCCTTCATAGCATTCGA
TCGCTATAAGACAATATCCAATCCAATAGACGGACGTTTGAGCTACGGAC
AGATTGTACTGCTGATACTCTTCACCTGGTTGTGGGCCACTCCGTTCTCC
GTGCTGCCATTGTTCCAGATCTGGGGACGTTACCAGCCGGAGGGCTTCCT
GACCACCTGCTCCTTCGATTACCTGACCAACACGGACGAAAACCGACTGT
TTGTGCGCACGATTTTCGTGTGGTCCTACGTGATACCGATGACCATGATC
CTGGTGTCCTACTACAAGCTCTTCACCCACGTCCGCGTGCACGAGAAGAT
GCTGGCCGAGCAGGCCAAGAAAATGAACGTGAAGTCGCTGTCGGCCAACG
CCAATGCGGATAACATGAGTGTGGAACTCCGGATCGCCAAGGCGGCCCTC
ATAATATACATGCTCTTCATTCTGGCCTGGACACCCTACTCCGTGGTGGC
ACTTATCGGATGCTTCGGGGAGCAGCAGCTAATCACGCCCTTCGTCTCAA
TGCTTCCGTGCCTGGCCTGCAAGTCGGTGTCCTGTCTGGATCCCTGGGTC
TATGCCACCAGTCATCCCAAGTATCGTCTGGAGCTGGAGCGCCGTCTGCC
GTGGCTGGGCATCCGCGAGAAGCATGCCACATCCGGAACATCCGGCGGCC
AGGAGAGTGTGGCCAGTGTCAGCGGCGATACTTTGGCACTCAGCGTGCAA
AACTAATGGTACAATTGTCAGATTAACGAAGTGAAAACTTTCTAAAAATC
ATACGTAATTAAGCTAATTAGTTGTAGGTCGTGCAATGAACTGAAAGAGT
TCCAAAAAATACAAACCAAAAAAAGTTGGCATTAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

GH28578.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:00:00
Subject Length Description Subject Range Query Range Score Percent Strand
Rh5-RA 1578 Rh5-RA 232..1570 1..1339 6695 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:28:22
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12007806..12008499 640..1333 3455 99.9 Plus
chr2L 23010047 chr2L 12007410..12007756 294..640 1735 100 Plus
chr2L 23010047 chr2L 12007059..12007351 1..293 1465 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:12:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:28:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12009139..12009838 640..1339 3500 100 Plus
2L 23513712 2L 12008743..12009089 294..640 1735 100 Plus
2L 23513712 2L 12008392..12008684 1..293 1465 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:24:54
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12009139..12009838 640..1339 3500 100 Plus
2L 23513712 2L 12008743..12009089 294..640 1735 100 Plus
2L 23513712 2L 12008392..12008684 1..293 1465 100 Plus
Blast to na_te.dros performed on 2019-03-16 13:28:20 has no hits.

GH28578.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:29:33 Download gff for GH28578.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12007059..12007351 1..293 100 -> Plus
chr2L 12007410..12007756 294..640 100 -> Plus
chr2L 12007807..12008499 641..1333 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 16:59:56 Download gff for GH28578.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 1..1149 58..1206 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:33:00 Download gff for GH28578.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 1..1149 58..1206 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:37:57 Download gff for GH28578.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 1..1149 58..1206 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:00:38 Download gff for GH28578.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 1..1149 58..1206 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:13:30 Download gff for GH28578.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 1..1149 58..1206 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:11:56 Download gff for GH28578.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 17..1349 1..1333 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:33:00 Download gff for GH28578.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 17..1349 1..1333 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:37:57 Download gff for GH28578.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 15..1347 1..1333 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:00:38 Download gff for GH28578.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 17..1349 1..1333 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:30 Download gff for GH28578.complete
Subject Subject Range Query Range Percent Splice Strand
Rh5-RA 15..1347 1..1333 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:29:33 Download gff for GH28578.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12008392..12008684 1..293 100 -> Plus
2L 12008743..12009089 294..640 100 -> Plus
2L 12009140..12009832 641..1333 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:29:33 Download gff for GH28578.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12008392..12008684 1..293 100 -> Plus
2L 12008743..12009089 294..640 100 -> Plus
2L 12009140..12009832 641..1333 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:29:33 Download gff for GH28578.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12008392..12008684 1..293 100 -> Plus
2L 12008743..12009089 294..640 100 -> Plus
2L 12009140..12009832 641..1333 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:37:57 Download gff for GH28578.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12008392..12008684 1..293 100 -> Plus
arm_2L 12008743..12009089 294..640 100 -> Plus
arm_2L 12009140..12009832 641..1333 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:37:19 Download gff for GH28578.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12008392..12008684 1..293 100 -> Plus
2L 12008743..12009089 294..640 100 -> Plus
2L 12009140..12009832 641..1333 100   Plus

GH28578.hyp Sequence

Translation from 0 to 1205

> GH28578.hyp
RRPECRPAKETRFWSGSSSMHINGPSGPQAYVNDSLGDGSVFPMGHGYPA
EYQHMVHAHWRGFREAPIYYHAGFYIAFIVLMLSSIFGNGLVIWIFSTSK
SLRTPSNLLILNLAIFDLFMCTNMPHYLINATVGYIVGGDLGCDIYALNG
GISGMGASITNAFIAFDRYKTISNPIDGRLSYGQIVLLILFTWLWATPFS
VLPLFQIWGRYQPEGFLTTCSFDYLTNTDENRLFVRTIFVWSYVIPMTMI
LVSYYKLFTHVRVHEKMLAEQAKKMNVKSLSANANADNMSVELRIAKAAL
IIYMLFILAWTPYSVVALIGCFGEQQLITPFVSMLPCLACKSVSCLDPWV
YATSHPKYRLELERRLPWLGIREKHATSGTSGGQESVASVSGDTLALSVQ
N*

GH28578.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
Rh5-PB 382 CG5279-PB 1..382 20..401 2024 100 Plus
Rh5-PA 382 CG5279-PA 1..382 20..401 2024 100 Plus
Rh4-PA 378 CG9668-PA 18..357 35..374 879 48.2 Plus
Rh3-PA 383 CG10888-PA 31..376 44..385 839 45.4 Plus
Rh2-PA 381 CG16740-PA 16..352 26..367 526 37.8 Plus

GH28578.pep Sequence

Translation from 57 to 1205

> GH28578.pep
MHINGPSGPQAYVNDSLGDGSVFPMGHGYPAEYQHMVHAHWRGFREAPIY
YHAGFYIAFIVLMLSSIFGNGLVIWIFSTSKSLRTPSNLLILNLAIFDLF
MCTNMPHYLINATVGYIVGGDLGCDIYALNGGISGMGASITNAFIAFDRY
KTISNPIDGRLSYGQIVLLILFTWLWATPFSVLPLFQIWGRYQPEGFLTT
CSFDYLTNTDENRLFVRTIFVWSYVIPMTMILVSYYKLFTHVRVHEKMLA
EQAKKMNVKSLSANANADNMSVELRIAKAALIIYMLFILAWTPYSVVALI
GCFGEQQLITPFVSMLPCLACKSVSCLDPWVYATSHPKYRLELERRLPWL
GIREKHATSGTSGGQESVASVSGDTLALSVQN*

GH28578.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14411-PA 382 GF14411-PA 1..382 1..382 1954 94.2 Plus
Dana\GF10499-PA 380 GF10499-PA 11..364 6..367 876 46.4 Plus
Dana\GF17335-PA 385 GF17335-PA 33..367 25..359 838 45.4 Plus
Dana\GF23219-PA 381 GF23219-PA 16..352 7..348 518 38.1 Plus
Dana\GF17352-PA 373 GF17352-PA 30..345 32..348 509 38.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23755-PA 382 GG23755-PA 1..382 1..382 1979 96.1 Plus
Dere\Rh4-PA 378 GG15846-PA 11..357 6..355 881 47.7 Plus
Dere\Rh3-PA 383 GG15608-PA 31..376 25..366 850 46 Plus
Dere\Rh2-PA 381 GG23078-PA 16..352 7..348 512 37.8 Plus
Dere\ninaE-PA 373 GG15786-PA 30..345 32..348 509 38.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13098-PA 391 GH13098-PA 8..391 2..382 1725 82 Plus
Dgri\GH23919-PA 382 GH23919-PA 36..360 30..355 865 49.1 Plus
Dgri\GH17066-PA 383 GH17066-PA 19..362 9..355 865 46.1 Plus
Dgri\GH14493-PA 383 GH14493-PA 29..355 18..348 520 39.2 Plus
Dgri\GH23312-PA 373 GH23312-PA 30..367 32..372 511 37.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:12:24
Subject Length Description Subject Range Query Range Score Percent Strand
Rh5-PB 382 CG5279-PB 1..382 1..382 2024 100 Plus
Rh5-PA 382 CG5279-PA 1..382 1..382 2024 100 Plus
Rh4-PA 378 CG9668-PA 18..357 16..355 879 48.2 Plus
Rh3-PA 383 CG10888-PA 31..376 25..366 839 45.4 Plus
Rh2-PA 381 CG16740-PA 16..352 7..348 526 37.8 Plus
ninaE-PA 373 CG4550-PA 33..345 35..348 510 39.3 Plus
Rh7-PA 483 CG5638-PA 68..414 12..362 508 33.4 Plus
Rh6-PC 362 CG5192-PC 14..347 19..359 478 33.3 Plus
TkR86C-PA 504 CG6515-PA 88..376 57..345 201 22.9 Plus
TkR86C-PB 555 CG6515-PB 88..376 57..345 201 22.9 Plus
AstC-R2-PE 549 CG13702-PE 150..418 57..333 184 24.4 Plus
AstC-R2-PB 549 CG13702-PB 150..418 57..333 184 24.4 Plus
AstC-R2-PD 567 CG13702-PD 150..418 57..333 184 24.4 Plus
AstC-R2-PF 593 CG13702-P2-RF 150..418 57..333 184 24.4 Plus
CG30340-PA 396 CG30340-PA 38..311 59..340 175 20.5 Plus
Dop1R1-PC 481 CG9652-PC 122..437 61..349 168 24.2 Plus
Dop1R1-PB 496 CG9652-PB 137..452 61..349 168 24.2 Plus
Dop1R1-PD 511 CG9652-PD 152..467 61..349 168 24.2 Plus
Dop1R1-PF 535 CG9652-PF 137..452 61..349 168 24.2 Plus
Dop1R1-PE 560 CG9652-PE 137..452 61..349 168 24.2 Plus
AkhR-PD 443 CG11325-PD 45..328 59..341 166 22.4 Plus
AkhR-PB 443 CG11325-PB 45..328 59..341 166 22.4 Plus
AkhR-PA 443 CG11325-PA 45..328 59..341 166 22.4 Plus
AkhR-PC 455 CG11325-PC 45..328 59..341 166 22.4 Plus
RYa-R-PA 464 CG5811-PA 103..423 50..361 165 21.7 Plus
AstA-R1-PD 394 CG2872-PD 79..365 57..351 164 21.6 Plus
AstA-R1-PB 394 CG2872-PB 79..365 57..351 164 21.6 Plus
TyrRII-PD 586 CG16766-PD 81..258 59..238 161 29 Plus
TyrRII-PC 586 CG16766-PC 81..258 59..238 161 29 Plus
TyrRII-PB 586 CG16766-PB 81..258 59..238 161 29 Plus
TyrRII-PA 586 CG16766-PA 81..258 59..238 161 29 Plus
RYa-R-PC 467 CG5811-PC 103..422 50..360 160 21.5 Plus
RYa-R-PB 518 CG5811-PB 103..422 50..360 160 21.5 Plus
Octbeta1R-PB 421 CG6919-PB 112..419 55..347 158 23.1 Plus
Octbeta1R-PC 428 CG6919-PC 112..419 55..347 158 23.1 Plus
Octbeta1R-PE 508 CG6919-PE 112..419 55..347 158 23.1 Plus
Octbeta1R-PA 508 CG6919-PA 112..419 55..347 158 23.1 Plus
AstA-R2-PB 350 CG10001-PB 42..321 54..340 156 21.6 Plus
AstA-R2-PC 357 CG10001-PC 42..321 54..340 156 21.6 Plus
AstA-R2-PA 357 CG10001-PA 42..321 54..340 156 21.6 Plus
NPFR-PC 462 CG1147-PC 95..424 61..370 155 25 Plus
NPFR-PB 466 CG1147-PB 95..424 61..370 155 25 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14181-PA 389 GI14181-PA 10..389 5..382 1780 86.3 Plus
Dmoj\GI10051-PA 380 GI10051-PA 34..360 30..357 891 49.1 Plus
Dmoj\GI11660-PA 384 GI11660-PA 20..372 9..364 867 44.9 Plus
Dmoj\GI22968-PA 384 GI22968-PA 20..379 8..370 526 36.2 Plus
Dmoj\GI23224-PA 369 GI23224-PA 12..363 17..366 521 35.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16118-PA 384 GL16118-PA 1..384 1..382 1907 91.1 Plus
Dper\GL20699-PA 380 GL20699-PA 11..365 6..362 874 46.2 Plus
Dper\GL12515-PA 382 GL12515-PA 36..367 30..362 829 46.7 Plus
Dper\GL25012-PA 481 GL25012-PA 96..425 29..370 517 34.5 Plus
Dper\ninaE-PA 373 GL12414-PA 17..345 16..348 515 37.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18781-PA 384 GA18781-PA 1..384 1..382 1910 91.4 Plus
Dpse\Rh4-PA 380 GA28288-PA 11..365 6..362 875 46.2 Plus
Dpse\Rh3-PA 398 GA10619-PA 52..383 30..362 829 46.7 Plus
Dpse\GA23586-PA 482 GA23586-PA 97..426 29..370 517 34.5 Plus
Dpse\ninaE-PA 373 GA18249-PA 17..345 16..348 515 37.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:23:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26698-PA 677 GM26698-PA 1..195 1..195 1036 96.9 Plus
Dsec\GM24362-PA 378 GM24362-PA 11..357 6..355 879 47.7 Plus
Dsec\GM17694-PA 383 GM17694-PA 31..376 25..366 847 45.4 Plus
Dsec\GM17893-PA 381 GM17893-PA 16..352 7..348 512 38.1 Plus
Dsec\GM26888-PA 373 GM26888-PA 30..345 32..348 506 38.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23807-PA 382 GD23807-PA 1..382 1..382 2037 99.2 Plus
Dsim\GD12438-PA 378 GD12438-PA 11..357 6..355 879 47.7 Plus
Dsim\GD12743-PA 552 GD12743-PA 128..491 3..370 516 33.6 Plus
Dsim\GD19254-PA 381 GD19254-PA 16..352 7..348 511 38.1 Plus
Dsim\GD20095-PA 373 GD20095-PA 30..345 32..348 509 38.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17505-PA 391 GJ17505-PA 10..391 3..382 1821 88.5 Plus
Dvir\Rh4-PA 383 GJ11339-PA 18..361 9..355 868 46.4 Plus
Dvir\GJ23786-PA 380 GJ23786-PA 34..359 30..356 867 47.4 Plus
Dvir\Rh3-PA 381 GJ23441-PA 34..359 30..356 867 47.4 Plus
Dvir\GJ13041-PA 488 GJ13041-PA 85..426 13..362 531 33.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:23:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23748-PA 397 GK23748-PA 21..397 7..382 1812 88.3 Plus
Dwil\Rh3-PA 388 GK22792-PA 42..370 30..359 879 48.6 Plus
Dwil\Rh4-PA 380 GK13877-PA 12..365 6..361 872 45.8 Plus
Dwil\Rh2-PA 375 GK22745-PA 10..346 7..348 522 38.7 Plus
Dwil\GK13293-PA 492 GK13293-PA 79..433 14..370 522 33.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:23:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18562-PA 382 GE18562-PA 1..382 1..382 2021 98.2 Plus
Dyak\GE22185-PA 378 GE22185-PA 11..357 6..355 878 47.4 Plus
Dyak\GE25087-PA 383 GE25087-PA 31..376 25..366 847 45.4 Plus
Dyak\GE25107-PA 373 GE25107-PA 30..345 32..348 509 38.1 Plus
Dyak\GE25563-PA 381 GE25563-PA 16..352 7..348 509 37.8 Plus