Clone GH28721 Report

Search the DGRC for GH28721

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:287
Well:21
Vector:pOT2
Associated Gene/TranscriptCG9451-RA
Protein status:GH28721.pep: gold
Preliminary Size:1419
Sequenced Size:1419

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9451 2002-01-01 Sim4 clustering to Release 2
CG9451 2002-05-18 Blastp of sequenced clone
CG9451 2003-01-01 Sim4 clustering to Release 3
CG9451 2008-04-29 Release 5.5 accounting
CG9451 2008-08-15 Release 5.9 accounting
CG9451 2008-12-18 5.12 accounting

Clone Sequence Records

GH28721.complete Sequence

1419 bp (1419 high quality bases) assembled on 2002-05-18

GenBank Submission: AY118831

> GH28721.complete
CGCGCTTCTATTGATGCACTCACTCGACGCACAAGCCGCAAGCAAGCCGG
TCCACTTAATTCCTAACGATCCGCTAATTTAAGTTTGCGAAAATGCGAAA
GTTTCTCGGTCTGCTGCTCACCGTGAGCTGTGTTCTGATCGCCCGCGGCG
GCGTCATGGAGATTGAAGTGCCGCAGGAAGTCACGGAAGGTCCTGGGGAT
GTCTCTCAAAGCTCAGCGGAAATAAGCCATGCGAAGGACAGTGTTAGCAA
CTCAACCCTGAAGTTGGTTCACGTGCTTTTTCGTCATGGTCCTCGAACTC
CAGTGAGCACTTATCCCAACGATCCGTATATCAACGAAACCTACGAGCCC
TTCGGTTGGGGAGCACTCACCAATGGTGCTAAAGTGGAGCTGTATAAAAT
AGGCAAGCAACTGCGGCAGCGCTATAAAGATTTCCTCCCGGCGTATTATC
AGCCTGACGCGATCCGTGCCCAATCTTCGGAGTCACCGCGCACCTTGATG
TCTATGCAAATGGTCCTCGCCGGACTCTTTCCACCGGAGAACACTCCCAT
GGAGTGGAACCAGCTGCTCAATTGGCAGCCCATACCCATTGTGATGGAAC
CAGAGGAAACTGATGTGCACATTAGAATGAAGGCACCCTGCCCCCGATAC
GATGAGTCTGTTCTGGAGGTAATAGAACTTCCCGAGGTCAAAAAGCTGCA
TGCCGAGAGCTCGGATTTACTACGCGAACTGACCACTCACACCGGACTCA
ATATTACCCATGCCCACGATGTCACCAATGTGTTCATCACCCTGCTCTGT
GAACAGACTTTCGGCCTGCAGTTGCCCTCGTGGACCAATGACTACTTTCC
GGAGAAGATGCTACCCTTGGCTGAAAAGTCATATGTCTACGATGCCTATA
CGACCGAGCAGCGCAAAATGAAAGGGGGTTTCTTCGTGGAGCTGCTGTTG
AAGCAAATGCAGGACAGGATCTCCGGAGCATTGAAGCCAGCCAATCGCAA
GATGTTCCTTTCCTGCGGTCACGATTGGACCATCACAAATGTGCTATCCG
CCTTGAATGTTTGGGAGGCTCAGATGCCCCGCTTCTCGTCGTTGATTGCA
TTTGAGCTGCATCAAAACCCGCAAACTGGGGAGTATTTCCTGGAAATCTA
CTTCCAAAACGATCCCCACAAGGAGCCTCAGCAGCTGCAGATTCCCGGCT
GCGAGAAACAGTGTCCCATTGGCAAGTTATTGGAACTTACCAAGGACATA
ATTCCCGATGCGCCTTATGCAGAGTTGTGCAAAGCGAAGGGAACTCAAGG
CGGCGCTAAGATAAGCTATCACTAGAATGCTGATTAATCATGATTAGTGA
TCTAGTATACAGTATTAATGTTACTTACTAAATGAATATATGTAATTGTG
TAAAAAAAAAAAAAAAAAA

GH28721.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG9451-RA 1720 CG9451-RA 111..1513 1..1403 7015 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 01:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 19487830..19488614 1401..617 3865 99.5 Minus
chr3L 24539361 chr3L 19489966..19490240 275..1 1375 100 Minus
chr3L 24539361 chr3L 19488684..19488842 617..459 765 98.7 Minus
chr3L 24539361 chr3L 19489050..19489150 375..275 505 100 Minus
chr3L 24539361 chr3L 19488902..19488986 459..375 425 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:12:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 01:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19498400..19499186 1403..617 3935 100 Minus
3L 28110227 3L 19500538..19500812 275..1 1375 100 Minus
3L 28110227 3L 19499256..19499414 617..459 795 100 Minus
3L 28110227 3L 19499622..19499722 375..275 505 100 Minus
3L 28110227 3L 19499474..19499558 459..375 425 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 19491500..19492286 1403..617 3935 100 Minus
3L 28103327 3L 19493638..19493912 275..1 1375 100 Minus
3L 28103327 3L 19492356..19492514 617..459 795 100 Minus
3L 28103327 3L 19492722..19492822 375..275 505 100 Minus
3L 28103327 3L 19492574..19492658 459..375 425 100 Minus
3L 28103327 3L 19485678..19485806 1166..1038 150 74.4 Minus
Blast to na_te.dros performed on 2019-03-16 01:13:28 has no hits.

GH28721.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 01:14:31 Download gff for GH28721.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 19487830..19488613 618..1401 99 <- Minus
chr3L 19488684..19488842 459..617 98 <- Minus
chr3L 19488903..19488986 375..458 100 <- Minus
chr3L 19489051..19489149 276..374 100 <- Minus
chr3L 19489966..19490240 1..275 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:00:06 Download gff for GH28721.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 1..1233 93..1325 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:45:31 Download gff for GH28721.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 1..1233 93..1325 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:03:53 Download gff for GH28721.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 1..1233 93..1325 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:37:45 Download gff for GH28721.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 1..1233 93..1325 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 04:27:21 Download gff for GH28721.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 1..1233 93..1325 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:20:53 Download gff for GH28721.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 1..1401 1..1401 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:45:31 Download gff for GH28721.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 1..1401 1..1401 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:03:53 Download gff for GH28721.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 1..1387 15..1401 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:37:45 Download gff for GH28721.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 1..1401 1..1401 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 04:27:21 Download gff for GH28721.complete
Subject Subject Range Query Range Percent Splice Strand
CG9451-RA 1..1387 15..1401 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:31 Download gff for GH28721.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19499256..19499414 459..617 100 <- Minus
3L 19499475..19499558 375..458 100 <- Minus
3L 19499623..19499721 276..374 100 <- Minus
3L 19500538..19500812 1..275 100   Minus
3L 19498402..19499185 618..1401 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:31 Download gff for GH28721.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19499256..19499414 459..617 100 <- Minus
3L 19499475..19499558 375..458 100 <- Minus
3L 19499623..19499721 276..374 100 <- Minus
3L 19500538..19500812 1..275 100   Minus
3L 19498402..19499185 618..1401 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 01:14:31 Download gff for GH28721.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19499256..19499414 459..617 100 <- Minus
3L 19499475..19499558 375..458 100 <- Minus
3L 19499623..19499721 276..374 100 <- Minus
3L 19500538..19500812 1..275 100   Minus
3L 19498402..19499185 618..1401 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:03:53 Download gff for GH28721.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19491502..19492285 618..1401 100 <- Minus
arm_3L 19492356..19492514 459..617 100 <- Minus
arm_3L 19492575..19492658 375..458 100 <- Minus
arm_3L 19492723..19492821 276..374 100 <- Minus
arm_3L 19493638..19493912 1..275 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:10:08 Download gff for GH28721.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19491502..19492285 618..1401 100 <- Minus
3L 19492356..19492514 459..617 100 <- Minus
3L 19492575..19492658 375..458 100 <- Minus
3L 19492723..19492821 276..374 100 <- Minus
3L 19493638..19493912 1..275 100   Minus

GH28721.pep Sequence

Translation from 92 to 1324

> GH28721.pep
MRKFLGLLLTVSCVLIARGGVMEIEVPQEVTEGPGDVSQSSAEISHAKDS
VSNSTLKLVHVLFRHGPRTPVSTYPNDPYINETYEPFGWGALTNGAKVEL
YKIGKQLRQRYKDFLPAYYQPDAIRAQSSESPRTLMSMQMVLAGLFPPEN
TPMEWNQLLNWQPIPIVMEPEETDVHIRMKAPCPRYDESVLEVIELPEVK
KLHAESSDLLRELTTHTGLNITHAHDVTNVFITLLCEQTFGLQLPSWTND
YFPEKMLPLAEKSYVYDAYTTEQRKMKGGFFVELLLKQMQDRISGALKPA
NRKMFLSCGHDWTITNVLSALNVWEAQMPRFSSLIAFELHQNPQTGEYFL
EIYFQNDPHKEPQQLQIPGCEKQCPIGKLLELTKDIIPDAPYAELCKAKG
TQGGAKISYH*

GH28721.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10755-PA 408 GF10755-PA 1..408 1..410 1659 73.3 Plus
Dana\GF10754-PA 423 GF10754-PA 8..404 2..397 1001 45.9 Plus
Dana\GF10756-PA 304 GF10756-PA 30..293 50..313 742 51.1 Plus
Dana\GF16215-PA 438 GF16215-PA 48..377 56..388 593 38.6 Plus
Dana\GF18050-PA 398 GF18050-PA 44..390 55..397 525 33.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13403-PA 410 GG13403-PA 1..410 1..410 2009 89.5 Plus
Dere\GG13404-PA 391 GG13404-PA 30..380 50..400 1032 51.3 Plus
Dere\GG13402-PA 422 GG13402-PA 41..403 35..397 993 47.4 Plus
Dere\GG11981-PA 436 GG11981-PA 46..375 56..388 570 37.1 Plus
Dere\GG11088-PA 395 GG11088-PA 41..387 55..397 529 33.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14399-PA 397 GH14399-PA 18..397 17..410 1406 62.9 Plus
Dgri\GH14400-PA 390 GH14400-PA 29..379 50..400 1017 51.6 Plus
Dgri\GH14397-PA 419 GH14397-PA 35..404 29..398 995 47.3 Plus
Dgri\GH16334-PA 398 GH16334-PA 45..390 56..397 540 34.3 Plus
Dgri\GH22183-PA 444 GH22183-PA 30..391 31..397 517 32.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG9451-PB 410 CG9451-PB 1..410 1..410 2177 100 Plus
CG9451-PA 410 CG9451-PA 1..410 1..410 2177 100 Plus
CG9449-PK 391 CG9449-PK 34..379 54..399 1038 52.9 Plus
CG9449-PH 404 CG9449-PH 47..392 54..399 1038 52.9 Plus
CG9449-PG 404 CG9449-PG 47..392 54..399 1038 52.9 Plus
CG9449-PF 404 CG9449-PF 47..392 54..399 1038 52.9 Plus
CG9452-PA 422 CG9452-PA 46..403 40..397 972 47.5 Plus
Acph-1-PA 438 CG7899-PA 48..377 56..388 581 37.1 Plus
Acph-1-PB 455 CG7899-PB 65..394 56..388 581 37.1 Plus
CG6656-PA 395 CG6656-PA 33..387 47..397 528 34 Plus
CG9449-PJ 164 CG9449-PJ 34..154 54..174 404 58.7 Plus
CG9449-PE 177 CG9449-PE 47..167 54..174 404 58.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13525-PA 393 GI13525-PA 12..392 13..410 1309 59.3 Plus
Dmoj\GI13526-PA 390 GI13526-PA 29..381 50..402 1015 51.6 Plus
Dmoj\GI13524-PA 407 GI13524-PA 40..395 46..401 1003 48.3 Plus
Dmoj\GI22190-PA 398 GI22190-PA 45..390 56..397 548 34.7 Plus
Dmoj\GI21969-PA 428 GI21969-PA 10..375 1..397 528 30.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20895-PA 399 GL20895-PA 43..398 55..410 1493 74.2 Plus
Dper\GL20896-PA 390 GL20896-PA 29..379 50..400 1012 50.7 Plus
Dper\GL23800-PA 398 GL23800-PA 44..390 55..397 532 34.2 Plus
Dper\GL13492-PA 446 GL13492-PA 56..385 56..388 510 33 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21796-PA 413 GA21796-PA 57..412 55..410 1488 73.6 Plus
Dpse\GA28226-PA 425 GA28226-PA 17..405 5..397 1023 46.6 Plus
Dpse\GA21794-PA 390 GA21794-PA 29..379 50..400 1007 50.4 Plus
Dpse\GA19756-PA 398 GA19756-PA 44..390 55..397 532 34.2 Plus
Dpse\GA26867-PA 446 GA26867-PA 56..385 56..388 513 33 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18316-PA 411 GM18316-PA 1..411 1..410 2122 95.4 Plus
Dsec\GM18426-PA 391 GM18426-PA 30..379 50..399 1031 51.4 Plus
Dsec\GM18213-PA 422 GM18213-PA 46..403 40..397 966 46.6 Plus
Dsec\GM12199-PA 438 GM12199-PA 48..377 56..388 591 37.4 Plus
Dsec\GM26381-PA 395 GM26381-PA 41..387 55..397 528 33.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12277-PA 411 GD12277-PA 1..411 1..410 2143 95.9 Plus
Dsim\GD12276-PA 422 GD12276-PA 46..403 40..397 981 47.5 Plus
Dsim\GD17508-PA 406 GD17508-PA 48..377 56..388 589 37.4 Plus
Dsim\GD20904-PA 363 GD20904-PA 49..355 96..397 449 33.2 Plus
Dsim\GD12278-PA 168 GD12278-PA 34..146 54..166 409 61.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11884-PA 399 GJ11884-PA 39..398 51..410 1418 68.9 Plus
Dvir\GJ11885-PA 390 GJ11885-PA 33..381 54..402 1028 52.7 Plus
Dvir\GJ11883-PA 409 GJ11883-PA 30..396 35..401 997 47.7 Plus
Dvir\GJ24309-PA 398 GJ24309-PA 45..373 56..379 543 35.8 Plus
Dvir\Acph-PA 435 GJ14328-PA 45..382 56..397 529 34.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19458-PA 414 GK19458-PA 56..414 52..410 1395 67.7 Plus
Dwil\GK19447-PA 420 GK19447-PA 39..401 36..398 1004 46.8 Plus
Dwil\GK19469-PA 393 GK19469-PA 21..384 40..402 977 48.9 Plus
Dwil\GK14232-PA 398 GK14232-PA 44..390 55..397 548 34.5 Plus
Dwil\GK14084-PA 434 GK14084-PA 44..381 56..397 548 36.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:54:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22776-PA 410 GE22776-PA 1..410 1..410 2051 92.2 Plus
Dyak\GE22498-PA 410 GE22498-PA 1..410 1..410 2045 92 Plus
Dyak\GE22499-PA 391 GE22499-PA 30..380 50..400 1040 51.9 Plus
Dyak\GE22775-PA 409 GE22775-PA 33..390 40..397 988 47.5 Plus
Dyak\GE22497-PA 409 GE22497-PA 7..390 6..397 987 44.9 Plus

GH28721.hyp Sequence

Translation from 92 to 1324

> GH28721.hyp
MRKFLGLLLTVSCVLIARGGVMEIEVPQEVTEGPGDVSQSSAEISHAKDS
VSNSTLKLVHVLFRHGPRTPVSTYPNDPYINETYEPFGWGALTNGAKVEL
YKIGKQLRQRYKDFLPAYYQPDAIRAQSSESPRTLMSMQMVLAGLFPPEN
TPMEWNQLLNWQPIPIVMEPEETDVHIRMKAPCPRYDESVLEVIELPEVK
KLHAESSDLLRELTTHTGLNITHAHDVTNVFITLLCEQTFGLQLPSWTND
YFPEKMLPLAEKSYVYDAYTTEQRKMKGGFFVELLLKQMQDRISGALKPA
NRKMFLSCGHDWTITNVLSALNVWEAQMPRFSSLIAFELHQNPQTGEYFL
EIYFQNDPHKEPQQLQIPGCEKQCPIGKLLELTKDIIPDAPYAELCKAKG
TQGGAKISYH*

GH28721.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:50:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG9451-PB 410 CG9451-PB 1..410 1..410 2177 100 Plus
CG9451-PA 410 CG9451-PA 1..410 1..410 2177 100 Plus
CG9449-PK 391 CG9449-PK 34..379 54..399 1038 52.9 Plus
CG9449-PH 404 CG9449-PH 47..392 54..399 1038 52.9 Plus
CG9449-PG 404 CG9449-PG 47..392 54..399 1038 52.9 Plus