BDGP Sequence Production Resources |
Search the DGRC for GH28730
Library: | GH |
Tissue Source: | Drosophila melanogaster head |
Created by: | Ling Hong |
Date Registered: | 1998-06-02 |
Comments: | Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library. |
Original Plate Number: | 287 |
Well: | 30 |
Vector: | pOT2 |
Associated Gene/Transcript | Chd64-RB |
Protein status: | GH28730.pep: gold |
Preliminary Size: | 1519 |
Sequenced Size: | 1421 |
Gene | Date | Evidence |
---|---|---|
CG14996 | 2001-01-01 | Release 2 assignment |
CG14996 | 2001-09-19 | Blastp of sequenced clone |
CG14996 | 2003-01-01 | Sim4 clustering to Release 3 |
Chd64 | 2008-04-29 | Release 5.5 accounting |
Chd64 | 2008-08-15 | Release 5.9 accounting |
Chd64 | 2008-12-18 | 5.12 accounting |
1421 bp (1421 high quality bases) assembled on 2001-09-19
GenBank Submission: AY060355
> GH28730.complete TGCGAACGGACGTAGCCCAACCAACTTGGCCTTAACCCTTGCGCTCCCTC CGATTTATTCCGCGGCAAACACATTCCAGTGGACAGTGGTGCAGTTCAGC CCAAGACCAACCTACATTTTAGCTCCCTGCAAACCCGTTTCTTCATCAAA TAACTATGGCGTCCAACCGTGCAGCGAAGTCTGGTTTTGCCGCCGAGGCC CAGCGCAAAATTAACTCCAAGTACAGCGAGGAGCTGGCCCAGGAGAGCCT CGAGTGGATCAAGGCCGTCACCGAGGAGCCCATCAACACATCCGGCGACA CCGACAACTTCTTCGAGGTGCTCAAGGATGGCGTCATCCTGTGCAAGCTG GCCAACGCCCTGCAGCCCGGCTCCATCAAGAAGATCAACGAGAGCAAAAT GGCCTTCAAGTGCATGGAGAACATCTCGGCCTTCCTCGCGTGCGCCAAGA ACTTCGGTGTCCCCACCCAGGAGACCTTCCAGAGCGTCGACCTGTGGGAG CGCCAGAATCTGAACTCGGTGGTTATCTGCCTGCAGTCGCTGGGTCGCAA GGCCTCCAACTTCAACAAGCCATCGATTGGCCCCAAGGAGGCCGACAAGA ATGTGAGGAACTTCAGCGACGAGCAGCTGCGCGCCGGCGCCAACGTCATC TCCCTGCAGTACGGATCGAACAAGGGCGCCACCCAGTCGGGCATCAACTT CGGCAACACCCGGCACATGTAGATCGGTGTCCTGCAGCCAGGATCCTCCG CCCCACACATCGCTCTCAGACATTCCGCAACGAAAGACCAAACCAAAACG CCAACATCTTACGACGCAGCCGCTTTTGGGTTCCACACACTTTTCACGTT TTGAGCTAGATTTGGGTAGAGCCCCTGAATGATATGATATCAGATGGATA TGGATATATATTTATGATACCAATTTGTATTTGTATTCCAATTGACCAGG CGTATGCTGTTATGTAATAACATAAACTACTTTAATTTAATATTATTAAG TACTCGTACATACGGATCTTAGGATGATTTATTCTATTTTCAACATTTGC ATTCGCAACACGATCGTTTTGCATACTTTCGTTCTATATAAACCGCACTC AGCTTCATCCTTGTGCCATCGAAGACAGTTGGAGATGGAGTCACCATGCA GAGTGGGATAATAAGTGATCCACGGATCGAAATCGAAATGAATTGTGTTT GATGAATGTGTCTTCTATCTCGTAGAGTAACGATTACAATGTTGTTTCGA ACTAACCACCTGAATACCAATCAAAAACGCAGAGCATTTACAATAATGTA TTTACAGGCAGAGCAAATATATACATACATACGTGTTACACACTTTTGAA TGATCTATTTTAAATAATGTCCCCTGTTGAAAATAAATAATTATTCTTTT AACAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 4113677..4114530 | 1403..550 | 4270 | 100 | Minus |
chr3L | 24539361 | chr3L | 4114690..4115032 | 552..210 | 1715 | 100 | Minus |
chr3L | 24539361 | chr3L | 4121542..4121750 | 209..1 | 1045 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 4114290..4115144 | 1404..550 | 4275 | 100 | Minus |
3L | 28110227 | 3L | 4115304..4115646 | 552..210 | 1715 | 100 | Minus |
3L | 28110227 | 3L | 4122156..4122364 | 209..1 | 1045 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 4114290..4115144 | 1404..550 | 4275 | 100 | Minus |
3L | 28103327 | 3L | 4115304..4115646 | 552..210 | 1715 | 100 | Minus |
3L | 28103327 | 3L | 4122156..4122364 | 209..1 | 1045 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
TAHRE | 10463 | TAHRE OSV 10463bp | 6666..6842 | 1217..1396 | 126 | 54.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 4113677..4114528 | 552..1403 | 100 | <- | Minus |
chr3L | 4114691..4115032 | 210..551 | 100 | <- | Minus |
chr3L | 4121542..4121750 | 1..209 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chd64-RB | 1..567 | 156..722 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chd64-RB | 1..567 | 156..722 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chd64-RB | 1..567 | 156..722 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chd64-RB | 1..567 | 156..722 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chd64-RB | 1..567 | 156..722 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chd64-RB | 60..1462 | 1..1403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chd64-RB | 60..1462 | 1..1403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chd64-RB | 25..1427 | 1..1403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chd64-RB | 60..1462 | 1..1403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Chd64-RB | 25..1427 | 1..1403 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4122156..4122364 | 1..209 | 100 | Minus | |
3L | 4114291..4115142 | 552..1403 | 100 | <- | Minus |
3L | 4115305..4115646 | 210..551 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4122156..4122364 | 1..209 | 100 | Minus | |
3L | 4114291..4115142 | 552..1403 | 100 | <- | Minus |
3L | 4115305..4115646 | 210..551 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4122156..4122364 | 1..209 | 100 | Minus | |
3L | 4114291..4115142 | 552..1403 | 100 | <- | Minus |
3L | 4115305..4115646 | 210..551 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 4114291..4115142 | 552..1403 | 100 | <- | Minus |
arm_3L | 4115305..4115646 | 210..551 | 100 | <- | Minus |
arm_3L | 4122156..4122364 | 1..209 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 4114291..4115142 | 552..1403 | 100 | <- | Minus |
3L | 4115305..4115646 | 210..551 | 100 | <- | Minus |
3L | 4122156..4122364 | 1..209 | 100 | Minus |
Translation from 155 to 721
> GH28730.hyp MASNRAAKSGFAAEAQRKINSKYSEELAQESLEWIKAVTEEPINTSGDTD NFFEVLKDGVILCKLANALQPGSIKKINESKMAFKCMENISAFLACAKNF GVPTQETFQSVDLWERQNLNSVVICLQSLGRKASNFNKPSIGPKEADKNV RNFSDEQLRAGANVISLQYGSNKGATQSGINFGNTRHM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Chd64-PB | 188 | CG14996-PB | 1..188 | 1..188 | 961 | 100 | Plus |
Chd64-PC | 175 | CG14996-PC | 3..175 | 16..188 | 885 | 99.4 | Plus |
CG5023-PA | 169 | CG5023-PA | 5..169 | 24..188 | 379 | 47.9 | Plus |
Mp20-PA | 184 | CG4696-PA | 10..178 | 18..186 | 362 | 44.2 | Plus |
Mp20-PC | 189 | CG4696-PC | 10..178 | 18..186 | 362 | 44.2 | Plus |
Translation from 155 to 721
> GH28730.pep MASNRAAKSGFAAEAQRKINSKYSEELAQESLEWIKAVTEEPINTSGDTD NFFEVLKDGVILCKLANALQPGSIKKINESKMAFKCMENISAFLACAKNF GVPTQETFQSVDLWERQNLNSVVICLQSLGRKASNFNKPSIGPKEADKNV RNFSDEQLRAGANVISLQYGSNKGATQSGINFGNTRHM*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23888-PA | 188 | GF23888-PA | 1..188 | 1..188 | 962 | 96.8 | Plus |
Dana\GF17639-PA | 169 | GF17639-PA | 7..169 | 26..188 | 398 | 50.9 | Plus |
Dana\GF13684-PA | 184 | GF13684-PA | 10..180 | 18..188 | 369 | 43.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14221-PA | 188 | GG14221-PA | 1..188 | 1..188 | 992 | 100 | Plus |
Dere\GG23757-PA | 169 | GG23757-PA | 5..169 | 24..188 | 396 | 47.9 | Plus |
Dere\GG20371-PA | 184 | GG20371-PA | 10..180 | 18..188 | 368 | 43.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15556-PA | 188 | GH15556-PA | 1..188 | 1..188 | 962 | 95.7 | Plus |
Dgri\GH23202-PA | 243 | GH23202-PA | 80..243 | 25..188 | 399 | 48.8 | Plus |
Dgri\GH21621-PA | 184 | GH21621-PA | 10..180 | 18..188 | 357 | 44.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Chd64-PB | 188 | CG14996-PB | 1..188 | 1..188 | 961 | 100 | Plus |
Chd64-PC | 175 | CG14996-PC | 3..175 | 16..188 | 885 | 99.4 | Plus |
CG5023-PA | 169 | CG5023-PA | 5..169 | 24..188 | 379 | 47.9 | Plus |
Mp20-PA | 184 | CG4696-PA | 10..178 | 18..186 | 362 | 44.2 | Plus |
Mp20-PC | 189 | CG4696-PC | 10..178 | 18..186 | 362 | 44.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16831-PA | 188 | GI16831-PA | 1..188 | 1..188 | 956 | 95.7 | Plus |
Dmoj\GI22717-PA | 169 | GI22717-PA | 7..169 | 26..188 | 390 | 49.7 | Plus |
Dmoj\GI20073-PA | 184 | GI20073-PA | 10..180 | 18..188 | 353 | 43.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12739-PA | 188 | GL12739-PA | 1..188 | 1..188 | 963 | 96.3 | Plus |
Dper\GL11002-PA | 184 | GL11002-PA | 10..180 | 18..188 | 363 | 42.5 | Plus |
Dper\GL12090-PA | 266 | GL12090-PA | 6..157 | 25..177 | 359 | 46.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13413-PA | 188 | GA13413-PA | 1..188 | 1..188 | 963 | 96.3 | Plus |
Dpse\GA18602-PA | 169 | GA18602-PA | 5..169 | 24..188 | 395 | 49.7 | Plus |
Dpse\GA18362-PA | 184 | GA18362-PA | 10..180 | 18..188 | 363 | 42.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14014-PA | 188 | GM14014-PA | 1..188 | 1..188 | 992 | 100 | Plus |
Dsec\GM23099-PA | 182 | GM23099-PA | 20..182 | 26..188 | 396 | 48.5 | Plus |
Dsec\GM21458-PA | 216 | GM21458-PA | 22..192 | 14..188 | 312 | 38.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10956-PA | 184 | GD10956-PA | 10..180 | 18..188 | 373 | 43.7 | Plus |
Dsim\GD13293-PA | 74 | GD13293-PA | 17..74 | 131..188 | 310 | 100 | Plus |
Dsim\GD19339-PA | 106 | GD19339-PA | 1..106 | 87..188 | 275 | 50.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12578-PA | 188 | GJ12578-PA | 1..188 | 1..188 | 956 | 96.3 | Plus |
Dvir\GJ23442-PA | 214 | GJ23442-PA | 51..214 | 25..188 | 400 | 49.4 | Plus |
Dvir\GJ21167-PA | 184 | GJ21167-PA | 10..180 | 18..188 | 368 | 44.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10106-PA | 188 | GK10106-PA | 1..188 | 1..188 | 956 | 96.3 | Plus |
Dwil\GK22375-PA | 169 | GK22375-PA | 7..169 | 26..188 | 401 | 50.9 | Plus |
Dwil\GK17978-PA | 184 | GK17978-PA | 10..180 | 18..188 | 365 | 43.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20649-PA | 188 | GE20649-PA | 1..188 | 1..188 | 992 | 100 | Plus |
Dyak\Mp20-PA | 184 | GE12530-PA | 10..180 | 18..188 | 372 | 43.7 | Plus |
Dyak\GE25653-PA | 117 | GE25653-PA | 6..111 | 25..134 | 246 | 47.3 | Plus |