Clone GH28730 Report

Search the DGRC for GH28730

Clone and Library Details

Library:GH
Tissue Source:Drosophila melanogaster head
Created by:Ling Hong
Date Registered:1998-06-02
Comments:Sized fractionated cDNAs were directly ligated into pOT2. Plasmid cDNA library.
Original Plate Number:287
Well:30
Vector:pOT2
Associated Gene/TranscriptChd64-RB
Protein status:GH28730.pep: gold
Preliminary Size:1519
Sequenced Size:1421

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14996 2001-01-01 Release 2 assignment
CG14996 2001-09-19 Blastp of sequenced clone
CG14996 2003-01-01 Sim4 clustering to Release 3
Chd64 2008-04-29 Release 5.5 accounting
Chd64 2008-08-15 Release 5.9 accounting
Chd64 2008-12-18 5.12 accounting

Clone Sequence Records

GH28730.complete Sequence

1421 bp (1421 high quality bases) assembled on 2001-09-19

GenBank Submission: AY060355

> GH28730.complete
TGCGAACGGACGTAGCCCAACCAACTTGGCCTTAACCCTTGCGCTCCCTC
CGATTTATTCCGCGGCAAACACATTCCAGTGGACAGTGGTGCAGTTCAGC
CCAAGACCAACCTACATTTTAGCTCCCTGCAAACCCGTTTCTTCATCAAA
TAACTATGGCGTCCAACCGTGCAGCGAAGTCTGGTTTTGCCGCCGAGGCC
CAGCGCAAAATTAACTCCAAGTACAGCGAGGAGCTGGCCCAGGAGAGCCT
CGAGTGGATCAAGGCCGTCACCGAGGAGCCCATCAACACATCCGGCGACA
CCGACAACTTCTTCGAGGTGCTCAAGGATGGCGTCATCCTGTGCAAGCTG
GCCAACGCCCTGCAGCCCGGCTCCATCAAGAAGATCAACGAGAGCAAAAT
GGCCTTCAAGTGCATGGAGAACATCTCGGCCTTCCTCGCGTGCGCCAAGA
ACTTCGGTGTCCCCACCCAGGAGACCTTCCAGAGCGTCGACCTGTGGGAG
CGCCAGAATCTGAACTCGGTGGTTATCTGCCTGCAGTCGCTGGGTCGCAA
GGCCTCCAACTTCAACAAGCCATCGATTGGCCCCAAGGAGGCCGACAAGA
ATGTGAGGAACTTCAGCGACGAGCAGCTGCGCGCCGGCGCCAACGTCATC
TCCCTGCAGTACGGATCGAACAAGGGCGCCACCCAGTCGGGCATCAACTT
CGGCAACACCCGGCACATGTAGATCGGTGTCCTGCAGCCAGGATCCTCCG
CCCCACACATCGCTCTCAGACATTCCGCAACGAAAGACCAAACCAAAACG
CCAACATCTTACGACGCAGCCGCTTTTGGGTTCCACACACTTTTCACGTT
TTGAGCTAGATTTGGGTAGAGCCCCTGAATGATATGATATCAGATGGATA
TGGATATATATTTATGATACCAATTTGTATTTGTATTCCAATTGACCAGG
CGTATGCTGTTATGTAATAACATAAACTACTTTAATTTAATATTATTAAG
TACTCGTACATACGGATCTTAGGATGATTTATTCTATTTTCAACATTTGC
ATTCGCAACACGATCGTTTTGCATACTTTCGTTCTATATAAACCGCACTC
AGCTTCATCCTTGTGCCATCGAAGACAGTTGGAGATGGAGTCACCATGCA
GAGTGGGATAATAAGTGATCCACGGATCGAAATCGAAATGAATTGTGTTT
GATGAATGTGTCTTCTATCTCGTAGAGTAACGATTACAATGTTGTTTCGA
ACTAACCACCTGAATACCAATCAAAAACGCAGAGCATTTACAATAATGTA
TTTACAGGCAGAGCAAATATATACATACATACGTGTTACACACTTTTGAA
TGATCTATTTTAAATAATGTCCCCTGTTGAAAATAAATAATTATTCTTTT
AACAAAAAAAAAAAAAAAAAA

GH28730.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
Chd64-RB 1736 Chd64-RB 223..1626 1..1404 7020 100 Plus
Chd64.a 1383 Chd64.a 75..1273 206..1404 5980 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 08:03:33
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 4113677..4114530 1403..550 4270 100 Minus
chr3L 24539361 chr3L 4114690..4115032 552..210 1715 100 Minus
chr3L 24539361 chr3L 4121542..4121750 209..1 1045 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 17:12:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 08:03:31
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4114290..4115144 1404..550 4275 100 Minus
3L 28110227 3L 4115304..4115646 552..210 1715 100 Minus
3L 28110227 3L 4122156..4122364 209..1 1045 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:43:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 4114290..4115144 1404..550 4275 100 Minus
3L 28103327 3L 4115304..4115646 552..210 1715 100 Minus
3L 28103327 3L 4122156..4122364 209..1 1045 100 Minus
Blast to na_te.dros performed 2019-03-16 08:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 6666..6842 1217..1396 126 54.4 Plus

GH28730.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 08:04:11 Download gff for GH28730.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 4113677..4114528 552..1403 100 <- Minus
chr3L 4114691..4115032 210..551 100 <- Minus
chr3L 4121542..4121750 1..209 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 17:00:14 Download gff for GH28730.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 1..567 156..722 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:04:36 Download gff for GH28730.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 1..567 156..722 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 09:46:23 Download gff for GH28730.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 1..567 156..722 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 20:35:15 Download gff for GH28730.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 1..567 156..722 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 09:34:38 Download gff for GH28730.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 1..567 156..722 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 23:53:45 Download gff for GH28730.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 60..1462 1..1403 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:04:36 Download gff for GH28730.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 60..1462 1..1403 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:46:23 Download gff for GH28730.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 25..1427 1..1403 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 20:35:15 Download gff for GH28730.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 60..1462 1..1403 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:34:38 Download gff for GH28730.complete
Subject Subject Range Query Range Percent Splice Strand
Chd64-RB 25..1427 1..1403 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:04:11 Download gff for GH28730.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4122156..4122364 1..209 100   Minus
3L 4114291..4115142 552..1403 100 <- Minus
3L 4115305..4115646 210..551 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:04:11 Download gff for GH28730.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4122156..4122364 1..209 100   Minus
3L 4114291..4115142 552..1403 100 <- Minus
3L 4115305..4115646 210..551 100 <- Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 08:04:11 Download gff for GH28730.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4122156..4122364 1..209 100   Minus
3L 4114291..4115142 552..1403 100 <- Minus
3L 4115305..4115646 210..551 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:46:23 Download gff for GH28730.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4114291..4115142 552..1403 100 <- Minus
arm_3L 4115305..4115646 210..551 100 <- Minus
arm_3L 4122156..4122364 1..209 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:12:13 Download gff for GH28730.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4114291..4115142 552..1403 100 <- Minus
3L 4115305..4115646 210..551 100 <- Minus
3L 4122156..4122364 1..209 100   Minus

GH28730.hyp Sequence

Translation from 155 to 721

> GH28730.hyp
MASNRAAKSGFAAEAQRKINSKYSEELAQESLEWIKAVTEEPINTSGDTD
NFFEVLKDGVILCKLANALQPGSIKKINESKMAFKCMENISAFLACAKNF
GVPTQETFQSVDLWERQNLNSVVICLQSLGRKASNFNKPSIGPKEADKNV
RNFSDEQLRAGANVISLQYGSNKGATQSGINFGNTRHM*

GH28730.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 07:50:43
Subject Length Description Subject Range Query Range Score Percent Strand
Chd64-PB 188 CG14996-PB 1..188 1..188 961 100 Plus
Chd64-PC 175 CG14996-PC 3..175 16..188 885 99.4 Plus
CG5023-PA 169 CG5023-PA 5..169 24..188 379 47.9 Plus
Mp20-PA 184 CG4696-PA 10..178 18..186 362 44.2 Plus
Mp20-PC 189 CG4696-PC 10..178 18..186 362 44.2 Plus

GH28730.pep Sequence

Translation from 155 to 721

> GH28730.pep
MASNRAAKSGFAAEAQRKINSKYSEELAQESLEWIKAVTEEPINTSGDTD
NFFEVLKDGVILCKLANALQPGSIKKINESKMAFKCMENISAFLACAKNF
GVPTQETFQSVDLWERQNLNSVVICLQSLGRKASNFNKPSIGPKEADKNV
RNFSDEQLRAGANVISLQYGSNKGATQSGINFGNTRHM*

GH28730.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 11:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23888-PA 188 GF23888-PA 1..188 1..188 962 96.8 Plus
Dana\GF17639-PA 169 GF17639-PA 7..169 26..188 398 50.9 Plus
Dana\GF13684-PA 184 GF13684-PA 10..180 18..188 369 43.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 11:50:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14221-PA 188 GG14221-PA 1..188 1..188 992 100 Plus
Dere\GG23757-PA 169 GG23757-PA 5..169 24..188 396 47.9 Plus
Dere\GG20371-PA 184 GG20371-PA 10..180 18..188 368 43.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 11:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15556-PA 188 GH15556-PA 1..188 1..188 962 95.7 Plus
Dgri\GH23202-PA 243 GH23202-PA 80..243 25..188 399 48.8 Plus
Dgri\GH21621-PA 184 GH21621-PA 10..180 18..188 357 44.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Chd64-PB 188 CG14996-PB 1..188 1..188 961 100 Plus
Chd64-PC 175 CG14996-PC 3..175 16..188 885 99.4 Plus
CG5023-PA 169 CG5023-PA 5..169 24..188 379 47.9 Plus
Mp20-PA 184 CG4696-PA 10..178 18..186 362 44.2 Plus
Mp20-PC 189 CG4696-PC 10..178 18..186 362 44.2 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 11:50:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16831-PA 188 GI16831-PA 1..188 1..188 956 95.7 Plus
Dmoj\GI22717-PA 169 GI22717-PA 7..169 26..188 390 49.7 Plus
Dmoj\GI20073-PA 184 GI20073-PA 10..180 18..188 353 43.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 11:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12739-PA 188 GL12739-PA 1..188 1..188 963 96.3 Plus
Dper\GL11002-PA 184 GL11002-PA 10..180 18..188 363 42.5 Plus
Dper\GL12090-PA 266 GL12090-PA 6..157 25..177 359 46.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 11:50:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13413-PA 188 GA13413-PA 1..188 1..188 963 96.3 Plus
Dpse\GA18602-PA 169 GA18602-PA 5..169 24..188 395 49.7 Plus
Dpse\GA18362-PA 184 GA18362-PA 10..180 18..188 363 42.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 11:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14014-PA 188 GM14014-PA 1..188 1..188 992 100 Plus
Dsec\GM23099-PA 182 GM23099-PA 20..182 26..188 396 48.5 Plus
Dsec\GM21458-PA 216 GM21458-PA 22..192 14..188 312 38.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 11:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10956-PA 184 GD10956-PA 10..180 18..188 373 43.7 Plus
Dsim\GD13293-PA 74 GD13293-PA 17..74 131..188 310 100 Plus
Dsim\GD19339-PA 106 GD19339-PA 1..106 87..188 275 50.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 11:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12578-PA 188 GJ12578-PA 1..188 1..188 956 96.3 Plus
Dvir\GJ23442-PA 214 GJ23442-PA 51..214 25..188 400 49.4 Plus
Dvir\GJ21167-PA 184 GJ21167-PA 10..180 18..188 368 44.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 11:50:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK10106-PA 188 GK10106-PA 1..188 1..188 956 96.3 Plus
Dwil\GK22375-PA 169 GK22375-PA 7..169 26..188 401 50.9 Plus
Dwil\GK17978-PA 184 GK17978-PA 10..180 18..188 365 43.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 11:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20649-PA 188 GE20649-PA 1..188 1..188 992 100 Plus
Dyak\Mp20-PA 184 GE12530-PA 10..180 18..188 372 43.7 Plus
Dyak\GE25653-PA 117 GE25653-PA 6..111 25..134 246 47.3 Plus